Referenced by ⇅
Year
apTreeshape : Analyses of Phylogenetic Treeshape (Version 1.5-0.1)
2005
ArchaeoChron : Bayesian Modeling of Archaeological Chronologies (Version 0.1)
2017
ArchaeoPhases : Post-Processing of the Markov Chain Simulated by "ChronoModel",
"Oxcal" or "BCal" (Version 1.8)
2017
bayesbr : Beta Regression on a Bayesian Model (Version 0.0.1.0)
2020
BayesSAE : Bayesian Analysis of Small Area Estimation (Version 1.0-2)
2013
BayesSPsurv : Bayesian Spatial Split Population Survival Model (Version 0.1.4)
2020
BayLum : Chronological Bayesian Models Integrating Optically Stimulated
Luminescence and Radiocarbon Age Dating (Version 0.3.1)
2017
bcp : Bayesian Analysis of Change Point Problems (Version 4.0.3)
2006
bdpopt : Optimisation of Bayesian Decision Problems (Version 1.0-1)
2016
BEST : Bayesian Estimation Supersedes the t-Test (Version 0.5.4)
2013
BiProbitPartial : Bivariate Probit with Partial Observability (Version 1.0.3)
2019
cvam : Coarsened Variable Modeling (Version 0.9.3)
2021
dalmatian : Automating the Fitting of Double Linear Mixed Models in "JAGS"
and "nimble" (Version 1.0.0)
2018
DAMisc : Dave Armstrong"s Miscellaneous Functions (Version 1.7.2)
2010
hierarchicalDS : Functions to Perform Hierarchical Analysis of Distance Sampling
Data (Version 3.0)
2012
MasterBayes : ML and MCMC Methods for Pedigree Reconstruction and Analysis (Version 2.58)
2006
ocomposition : Regression for Rank-Indexed Compositional Data (Version 1.1)
2012
polyfreqs : Bayesian Population Genomics in Autopolyploids (Version 1.0.2)
2015
psychtm : Text Mining Methods for Psychological Research (Version 2021.1.0)
2021
rFIA : Estimation of Forest Variables using the FIA Database (Version 1.0.0)
2019
Rlda : Bayesian LDA for Mixed-Membership Clustering Analysis (Version 0.2.6)
2017
saeHB.gpois : SAE using HB Method under Generalized Poisson Distribution (Version 0.1.1)
2022
saeHB.hnb : Small Area Estimation under Hurdle Negative Binomial
Distribution using Hierarchical Bayesian Method (Version 0.1.2)
2022
saeHB.spatial : Small Area Estimation under Spatial SAR Model using Hierarchical
Bayesian Method (Version 0.1.0)
2022
saeHB.twofold : Hierarchical Bayes Twofold Subarea Level Model SAE (Version 0.1.1)
2022
saeHB.zinb : Small Area Estimation using Hierarchical Bayesian under Zero
Inflated Negative Binomial Distribution (Version 0.1.1)
2022
spflow : Spatial Econometric Interaction Models (Version 0.1.0)
2021
mcmcabn : Flexible Implementation of a Structural MCMC Sampler for DAGs (Version 0.6)
2019
tRophicPosition : Bayesian Trophic Position Estimation with Stable Isotopes (Version 0.8.0)
2017
eiCompare : Compares Different Ecological Inference Methods (Version 3.0.4)
2016
AHMbook : Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2 (Version 0.2.9)
2017
AdMit : Adaptive Mixture of Student-t Distributions (Version 2.1.9)
2008
AnaCoDa : Analysis of Codon Data under Stationarity using a Bayesian Framework (Version 0.1.4.4)
2018
BAMBI : Bivariate Angular Mixture Models (Version 2.3.5)
2017
BANOVA : Hierarchical Bayesian ANOVA Models (Version 1.2.1)
2014
BAYSTAR : On Bayesian Analysis of Threshold Autoregressive Models (Version 0.2-10)
2008
BCClong : Bayesian Consensus Clustering for Multiple Longitudinal Features (Version 1.0.2)
2023
BCEA : Bayesian Cost Effectiveness Analysis (Version 2.4.6)
2012
BCHM : Clinical Trial Calculation Based on BCHM Design (Version 1.00)
2019
BDWreg : Bayesian Inference for Discrete Weibull Regression (Version 1.3.0)
2016
BEND : Bayesian Estimation of Nonlinear Data (BEND) (Version 1.0)
2024
BGGE : Bayesian Genomic Linear Models Applied to GE Genome Selection (Version 0.6.5)
2017
BGVAR : Bayesian Global Vector Autoregressions (Version 2.5.5)
2020
BMAmevt : Multivariate Extremes: Bayesian Estimation of the Spectral Measure (Version 1.0.5)
2017
BNPdensity : Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures (Version 2023.3.8)
2011
BNPmix : Bayesian Nonparametric Mixture Models (Version 1.0.2)
2019
BNSP : Bayesian Non- And Semi-Parametric Model Fitting (Version 2.2.3)
2014
BRugs : Interface to the 'OpenBUGS' MCMC Software (Version 0.9-2.1)
2005
BSL : Bayesian Synthetic Likelihood (Version 3.2.5)
2018
BSPADATA : Bayesian Proposal to Fit Spatial Econometric Models (Version 1.1.0)
2018
BTSPAS : Bayesian Time-Stratified Population Analysis (Version 2024.4.1)
2010
BTYDplus : Probabilistic Models for Assessing and Predicting your Customer Base (Version 1.2.0)
2016
BVAR : Hierarchical Bayesian Vector Autoregression (Version 1.0.5)
2019
BaM : Functions and Datasets for "Bayesian Methods: A Social and Behavioral Sciences Approach" (Version 1.0.3)
2008
BayesARIMAX : Bayesian Estimation of ARIMAX Model (Version 0.1.1)
2020
BayesBEKK : Bayesian Estimation of Bivariate Volatility Model (Version 0.1.1)
2019
BayesBinMix : Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions (Version 1.4.1)
2016
BayesCACE : Bayesian Model for CACE Analysis (Version 1.2.3)
2021
BayesComm : Bayesian Community Ecology Analysis (Version 0.1-2)
2014
BayesDissolution : Bayesian Models for Dissolution Testing (Version 0.2.0)
2022
BayesFM : Bayesian Inference for Factor Modeling (Version 0.1.5)
2016
BayesFactor : Computation of Bayes Factors for Common Designs (Version 0.9.12-4.7)
2012
BayesGWQS : Bayesian Grouped Weighted Quantile Sum Regression (Version 0.1.1)
2020
BayesLCA : Bayesian Latent Class Analysis (Version 1.9)
2012
BayesLN : Bayesian Inference for Log-Normal Data (Version 0.2.10)
2020
BayesMFSurv : Bayesian Misclassified-Failure Survival Model (Version 0.1.0)
2019
BayesMassBal : Bayesian Data Reconciliation of Separation Processes (Version 1.1.0)
2020
BayesOrdDesign : Bayesian Group Sequential Design for Ordinal Data (Version 0.1.2)
2021
BayesPostEst : Generate Postestimation Quantities for Bayesian MCMC Estimation (Version 0.3.2)
2019
BayesRS : Bayes Factors for Hierarchical Linear Models with Continuous Predictors (Version 0.1.3)
2017
BayesTools : Tools for Bayesian Analyses (Version 0.2.17)
2021
BayesTwin : Bayesian Analysis of Item-Level Twin Data (Version 1.0)
2017
BayesX : R Utilities Accompanying the Software Package BayesX (Version 0.3-3)
2009
BayesianFactorZoo : Bayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models (Version 0.0.0.2)
2023
BayesianTools : General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics (Version 0.1.8)
2017
Bayesrel : Bayesian Reliability Estimation (Version 0.7.7)
2019
Bchron : Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling (Version 4.7.6)
2008
Bergm : Bayesian Exponential Random Graph Models (Version 5.0.7)
2009
BiDAG : Bayesian Inference for Directed Acyclic Graphs (Version 2.1.4)
2017
BiostatsUHNplus : Nested Data Summary and Adverse Events (Version 0.0.9)
2023
CARBayes : Spatial Generalised Linear Mixed Models for Areal Unit Data (Version 6.1.1)
2012
CARBayesST : Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data (Version 4.0)
2014
CARlasso : Conditional Autoregressive LASSO (Version 0.1.2)
2021
COMIX : Coarsened Mixtures of Hierarchical Skew Kernels (Version 1.0.0)
2022
CircSpaceTime : Spatial and Spatio-Temporal Bayesian Model for Circular Data (Version 0.9.0)
2019
ContRespPP : Predictive Probability for a Continuous Response with an ANOVA Structure (Version 0.4.2)
2022
DBR : Discrete Beta Regression (Version 1.4.1)
2022
DPP : Inference of Parameters of Normal Distributions from a Mixture of Normals (Version 0.1.2)
2017
DPTM : Dynamic Panel Multiple Threshold Model with Fixed Effects (Version 1.3.8)
2024
DrBats : Data Representation: Bayesian Approach That's Sparse (Version 0.1.6)
2016
EcoDiet : Estimating a Diet Matrix from Biotracer and Stomach Content Data (Version 2.0.1)
2020
EpiEstim : Estimate Time Varying Reproduction Numbers from Epidemic Curves (Version 2.2-4)
2012
EpiILM : Spatial and Network Based Individual Level Models for Epidemics (Version 1.5.2)
2017
EpiILMCT : Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics (Version 1.1.7)
2017
EpiLPS : A Fast and Flexible Bayesian Tool for Estimating Epidemiological Parameters (Version 1.3.0)
2021
EpiModel : Mathematical Modeling of Infectious Disease Dynamics (Version 2.4.0)
2013
EvidenceSynthesis : Synthesizing Causal Evidence in a Distributed Research Network (Version 0.5.0)
2020
FAVAR : Bayesian Analysis of a FAVAR Model (Version 0.1.3)
2022
FME : A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis (Version 1.3.6.3)
2009
HDInterval : Highest (Posterior) Density Intervals (Version 0.2.4)
2016
HelpersMG : Tools for Environmental Analyses, Ecotoxicology and Various R Functions (Version 6.1)
2015
Hmsc : Hierarchical Model of Species Communities (Version 3.0-13)
2019
IFP : Identifying Functional Polymorphisms (Version 0.2.4)
2012
ISEtools : Ion Selective Electrodes Analysis Methods (Version 3.2.0)
2020
InSilicoVA : Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm (Version 1.4.0)
2015
JMbayes2 : Extended Joint Models for Longitudinal and Time-to-Event Data (Version 0.4-5)
2021
JointAI : Joint Analysis and Imputation of Incomplete Data (Version 1.0.6)
2018
LAM : Some Latent Variable Models (Version 0.6-19)
2017
LAWBL : Latent (Variable) Analysis with Bayesian Learning (Version 1.5.0)
2020
LDATS : Latent Dirichlet Allocation Coupled with Time Series Analyses (Version 0.3.0)
2019
LNIRT : LogNormal Response Time Item Response Theory Models (Version 0.5.1)
2016
Luminescence : Comprehensive Luminescence Dating Data Analysis (Version 0.9.23)
2012
MBNMAdose : Dose-Response MBNMA Models (Version 0.4.3)
2019
MCMC.OTU : Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology (Version 1.0.10)
2014
MCMC.qpcr : Bayesian Analysis of qRT-PCR Data (Version 1.2.4)
2013
MCMCglmm : MCMC Generalised Linear Mixed Models (Version 2.35)
2009
MCMCpack : Markov Chain Monte Carlo (MCMC) Package (Version 1.7-0)
2003
MCMCtreeR : Prepare MCMCtree Analyses and Plot Bayesian Divergence Time Analyses Estimates on Trees (Version 1.1)
2019
MCMCvis : Tools to Visualize, Manipulate, and Summarize MCMC Output (Version 0.16.3)
2016
MJMbamlss : Multivariate Joint Models with 'bamlss' (Version 0.1.0)
2023
MPTmultiverse : Multiverse Analysis of Multinomial Processing Tree Models (Version 0.4-2)
2018
MSGARCH : Markov-Switching GARCH Models (Version 2.51)
2016
MetaLandSim : Landscape and Range Expansion Simulation (Version 2.0.0)
2014
MetaStan : Bayesian Meta-Analysis via 'Stan' (Version 1.0.0)
2018
MethComp : Analysis of Agreement in Method Comparison Studies (Version 1.30.0)
2011
MfUSampler : Multivariate-from-Univariate (MfU) MCMC Sampler (Version 1.1.0)
2014
MigConnectivity : Estimate Migratory Connectivity for Migratory Animals (Version 0.4.7)
2024
MixSIAR : Bayesian Mixing Models in R (Version 3.1.12)
2016
MplusAutomation : An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus (Version 1.1.1)
2010
NMADiagT : Network Meta-Analysis of Multiple Diagnostic Tests (Version 0.1.2)
2020
NestedCategBayesImpute : Modeling, Imputing and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations (Version 1.2.1)
2016
NobBS : Nowcasting by Bayesian Smoothing (Version 1.0.0)
2020
PICBayes : Bayesian Models for Partly Interval-Censored Data (Version 1.0)
2021
PINstimation : Estimation of the Probability of Informed Trading (Version 0.1.2)
2022
PLMIX : Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for Partial Rankings/Orderings (Version 2.1.1)
2016
POUMM : The Phylogenetic Ornstein-Uhlenbeck Mixed Model (Version 2.1.7)
2017
PVAClone : Population Viability Analysis with Data Cloning (Version 0.1-7)
2012
PhaseType : Inference for Phase-Type Distributions (Version 0.2.1)
2011
R2BayesX : Estimate Structured Additive Regression Models with 'BayesX' (Version 1.1-5)
2012
R2OpenBUGS : Running OpenBUGS from R (Version 3.2-3.2.1)
2011
R2MLwiN : Running 'MLwiN' from Within R (Version 0.8-9)
2012
R2WinBUGS : Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS' (Version 2.1-22.1)
2004
R2admb : 'ADMB' to R Interface Functions (Version 0.7.16.3)
2012
R2jags : Using R to Run 'JAGS' (Version 0.7-1.1)
2008
RGE : Response from Genotype to Environment (Version 1.0)
2021
RMark : R Code for Mark Analysis (Version 3.0.0)
2011
RPANDA : Phylogenetic ANalyses of DiversificAtion (Version 2.3)
2014
RcmdrPlugin.RMTCJags : R MTC Jags 'Rcmdr' Plugin (Version 1.0-2)
2015
RoBSA : Robust Bayesian Survival Analysis (Version 1.0.2)
2022
SALTSampler : Efficient Sampling on the Simplex (Version 1.1.0)
2015
SAME : Seamless Adaptive Multi-Arm Multi-Stage Enrichment (Version 0.1.0)
2023
SIBER : Stable Isotope Bayesian Ellipses in R (Version 2.1.9)
2016
SeqFeatR : A Tool to Associate FASTA Sequences and Features (Version 0.3.1)
2014
SimBIID : Simulation-Based Inference Methods for Infectious Disease Models (Version 0.2.1)
2019
TAM : Test Analysis Modules (Version 4.2-21)
2013
TESS : Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events (Version 2.1.2)
2012
TransPhylo : Inference of Transmission Tree from a Dated Phylogeny (Version 1.4.5)
2020
TreeBUGS : Hierarchical Multinomial Processing Tree Modeling (Version 1.5.0)
2016
UPG : Efficient Bayesian Algorithms for Binary and Categorical Data Regression Models (Version 0.3.4)
2021
Ultimixt : Bayesian Analysis of Location-Scale Mixture Models using a Weakly Informative Prior (Version 2.1)
2015
adaptMCMC : Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler (Version 1.5)
2012
adaptsmoFMRI : Adaptive Smoothing of FMRI Data (Version 1.2)
2012
afdx : Diagnosis Performance Using Attributable Fraction (Version 1.1.1)
2021
agRee : Various Methods for Measuring Agreement (Version 0.5-3)
2012
aihuman : Experimental Evaluation of Algorithm-Assisted Human Decision-Making (Version 0.1.0)
2023
airGR : Suite of GR Hydrological Models for Precipitation-Runoff Modelling (Version 1.7.6)
2017
altmeta : Alternative Meta-Analysis Methods (Version 4.1)
2016
amen : Additive and Multiplicative Effects Models for Networks and Relational Data (Version 1.4.5)
2012
ammiBayes : Bayesian Ammi Model for Continuous Data (Version 1.0-2)
2022
aphylo : Statistical Inference and Prediction of Annotations in Phylogenetic Trees (Version 0.3-3)
2022
apollo : Tools for Choice Model Estimation and Application (Version 0.3.2)
2019
arm : Data Analysis Using Regression and Multilevel/Hierarchical Models (Version 1.14-4)
2007
auRoc : Various Methods to Estimate the AUC (Version 0.2-1)
2015
baker : "Nested Partially Latent Class Models" (Version 1.0.3)
2022
bamlss : Bayesian Additive Models for Location, Scale, and Shape (and Beyond) (Version 1.2-3)
2017
bamp : Bayesian Age-Period-Cohort Modeling and Prediction (Version 2.1.3)
2018
bartcs : Bayesian Additive Regression Trees for Confounder Selection (Version 1.2.1)
2022
bayesDccGarch : Methods and Tools for Bayesian Dynamic Conditional Correlation GARCH(1,1) Model (Version 3.0.4)
2015
bayesGARCH : Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations (Version 2.1.10)
2008
bayesImageS : Bayesian Methods for Image Segmentation using a Potts Model (Version 0.6-1)
2016
bayesLife : Bayesian Projection of Life Expectancy (Version 5.2-0)
2011
bayesMRM : Bayesian Multivariate Receptor Modeling (Version 2.4.0)
2022
bayesMig : Bayesian Projection of Migration (Version 0.4-6)
2023
bayesPO : Bayesian Inference for Presence-Only Data (Version 0.5.0)
2021
bayesSurv : Bayesian Survival Regression with Flexible Error and Random Effects Distributions (Version 3.7)
2004
bayesTFR : Bayesian Fertility Projection (Version 7.4-2)
2010
bayesanova : Bayesian Inference in the Analysis of Variance via Markov Chain Monte Carlo in Gaussian Mixture Models (Version 1.6)
2019
bayescount : Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC (Version 0.9.99-9)
2007
bayesianVARs : MCMC Estimation of Bayesian Vectorautoregressions (Version 0.1.2)
2024
bayeslm : Efficient Sampling for Gaussian Linear Regression with Arbitrary Priors (Version 1.0.1)
2017
bayesmix : Bayesian Mixture Models with JAGS (Version 0.7-6)
2004
bayest : Effect Size Targeted Bayesian Two-Sample t-Tests via Markov Chain Monte Carlo in Gaussian Mixture Models (Version 1.5)
2019
bayesvl : Visually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan' (Version 0.8.5)
2019
bcf : Causal Inference using Bayesian Causal Forests (Version 2.0.2)
2018
bcgam : Bayesian Constrained Generalised Linear Models (Version 1.0)
2018
bfw : Bayesian Framework for Computational Modeling (Version 0.4.2)
2018
bgsmtr : Bayesian Group Sparse Multi-Task Regression (Version 0.7)
2016
bgumbel : Bimodal Gumbel Distribution (Version 0.0.3)
2021
bhm : Biomarker Threshold Models (Version 1.18)
2016
bhpm : Bayesian Hierarchical Poisson Models for Multiple Grouped Outcomes with Clustering (Version 1.7)
2020
bipd : Bayesian Individual Patient Data Meta-Analysis using 'JAGS' (Version 0.3)
2022
bite : Bayesian Integrative Models of Trait Evolution (Version 0.3)
2020
bkmrhat : Parallel Chain Tools for Bayesian Kernel Machine Regression (Version 1.1.3)
2020
blapsr : Bayesian Inference with Laplace Approximations and P-Splines (Version 0.6.1)
2020
blatent : Bayesian Latent Variable Models (Version 0.1.2)
2020
blavaan : Bayesian Latent Variable Analysis (Version 0.5-4)
2015
bmstdr : Bayesian Modeling of Spatio-Temporal Data with R (Version 0.7.9)
2022
bnma : Bayesian Network Meta-Analysis using 'JAGS' (Version 1.6.0)
2019
boral : Bayesian Ordination and Regression AnaLysis (Version 2.0.2)
2014
bpr : Fitting Bayesian Poisson Regression (Version 1.0.8)
2021
bridgesampling : Bridge Sampling for Marginal Likelihoods and Bayes Factors (Version 1.1-2)
2017
brms.mmrm : Bayesian MMRMs using 'brms' (Version 0.1.0)
2023
brms : Bayesian Regression Models using 'Stan' (Version 2.21.0)
2015
brokenstick : Broken Stick Model for Irregular Longitudinal Data (Version 2.5.0)
2020
broom.mixed : Tidying Methods for Mixed Models (Version 0.2.9.5)
2018
broom : Convert Statistical Objects into Tidy Tibbles (Version 1.0.5)
2014
bsam : Bayesian State-Space Models for Animal Movement (Version 1.1.3)
2016
bspcov : Bayesian Sparse Estimation of a Covariance Matrix (Version 1.0.0)
2024
bsreg : Bayesian Spatial Regression Models (Version 0.0.2)
2021
bssm : Bayesian Inference of Non-Linear and Non-Gaussian State Space Models (Version 2.0.2)
2017
btergm : Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood (Version 1.10.12)
2015
bvartools : Bayesian Inference of Vector Autoregressive and Error Correction Models (Version 0.2.4)
2019
c212 : Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes) (Version 0.98)
2017
camtrapR : Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses (Version 2.3.0)
2015
coalescentMCMC : MCMC Algorithms for the Coalescent (Version 0.4-4)
2012
compareMCMCs : Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines (Version 0.5.0)
2022
countSTAR : Flexible Modeling of Count Data (Version 1.0.2)
2023
cplm : Compound Poisson Linear Models (Version 0.7-12)
2011
crossnma : Cross-Design & Cross-Format Network Meta-Analysis and Regression (Version 1.2.0)
2022
ctmcd : Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data (Version 1.4.4)
2016
cubfits : Codon Usage Bias Fits (Version 0.1-4)
2014
dclone : Data Cloning and MCMC Tools for Maximum Likelihood Methods (Version 2.3-2)
2009
dcmle : Hierarchical Models Made Easy with Data Cloning (Version 0.4-1)
2011
deBInfer : Bayesian Inference for Differential Equations (Version 0.4.4)
2016
diagis : Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling (Version 0.2.3)
2016
dmbc : Model Based Clustering of Binary Dissimilarity Measurements (Version 1.0.2)
2020
doublIn : Estimate Incubation or Latency Time using Doubly Interval Censored Observations (Version 0.1.0)
2024
dreamer : Dose Response Models for Bayesian Model Averaging (Version 3.1.0)
2021
eSIR : Extended State-Space SIR Models (Version 0.4.2)
2021
eggCounts : Hierarchical Modelling of Faecal Egg Counts (Version 2.4)
2013
eiPack : Ecological Inference and Higher-Dimension Data Management (Version 0.2-2)
2006
elrm : Exact Logistic Regression via MCMC (Version 1.2.5)
2006
embryogrowth : Tools to Analyze the Thermal Reaction Norm of Embryo Growth (Version 9.1)
2014
emdbook : Support Functions and Data for "Ecological Models and Data" (Version 1.3.13)
2007
emmeans : Estimated Marginal Means, aka Least-Squares Means (Version 1.10.1)
2017
endorse : Bayesian Measurement Models for Analyzing Endorsement Experiments (Version 1.6.2)
2012
ergm : Fit, Simulate and Diagnose Exponential-Family Models for Networks (Version 4.6.0)
2008
ergmito : Exponential Random Graph Models for Small Networks (Version 0.3-1)
2020
ern : Effective Reproduction Number Estimation (Version 2.0.0)
2024
evolqg : Evolutionary Quantitative Genetics (Version 0.3-4)
2015
evolvability : Calculation of Evolvability Parameters (Version 2.0.0)
2014
ewoc : Escalation with Overdose Control (Version 0.3.0)
2017
exdqlm : Extended Dynamic Quantile Linear Models (Version 0.1.3)
2021
fabMix : Overfitting Bayesian Mixtures of Factor Analyzers with Parsimonious Covariance and Unknown Number of Components (Version 5.1)
2018
factor.switching : Post-Processing MCMC Outputs of Bayesian Factor Analytic Models (Version 1.4)
2020
factorstochvol : Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models (Version 1.1.0)
2016
fdasrvf : Elastic Functional Data Analysis (Version 2.2.0)
2012
fitode : Tools for Ordinary Differential Equations Model Fitting (Version 0.1.1)
2022
fmcmc : A friendly MCMC framework (Version 0.5-2)
2019
gap : Genetic Analysis Package (Version 1.5-3)
2004
gconsensus : Consensus Value Constructor (Version 0.3.2)
2020
geiger : Analysis of Evolutionary Diversification (Version 2.0.11)
2007
gemtc : Network Meta-Analysis Using Bayesian Methods (Version 1.0-2)
2012
geoBayes : Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods (Version 0.7.3)
2014
gfiExtremes : Generalized Fiducial Inference for Extremes (Version 1.0.1)
2020
ggdmc : Cognitive Models (Version 0.2.6.0)
2016
ggmcmc : Tools for Analyzing MCMC Simulations from Bayesian Inference (Version 1.5.1.1)
2012
glmmTMB : Generalized Linear Mixed Models using Template Model Builder (Version 1.1.9)
2017
glmmfields : Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling (Version 0.1.8)
2018
greta : Simple and Scalable Statistical Modelling in R (Version 0.4.5)
2017
hSDM : Hierarchical Bayesian Species Distribution Models (Version 1.4.4)
2012
handwriter : Handwriting Analysis in R (Version 3.0.0)
2021
hdpGLM : Hierarchical Dirichlet Process Generalized Linear Models (Version 1.0.3)
2020
icenReg : Regression Models for Interval Censored Data (Version 2.0.16)
2015
icensBKL : Accompanion to the Book on Interval Censoring by Bogaerts, Komarek, and Lesaffre (Version 1.5)
2017
immer : Item Response Models for Multiple Ratings (Version 1.5-13)
2015
isotracer : Isotopic Tracer Analysis Using MCMC (Version 1.1.5)
2021
ivdoctr : Ensures Mutually Consistent Beliefs When Using IVs (Version 1.0.1)
2020
jSDM : Joint Species Distribution Models (Version 0.2.6)
2019
jagsUI : A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses (Version 1.6.2)
2015
jagstargets : Targets for JAGS Pipelines (Version 1.2.0)
2021
krige : Geospatial Kriging with Metropolis Sampling (Version 0.6.2)
2018
latentnet : Latent Position and Cluster Models for Statistical Networks (Version 2.11.0)
2005
lcra : Bayesian Joint Latent Class and Regression Models (Version 1.1.5)
2020
linelistBayes : Bayesian Analysis of Epidemic Data Using Line List and Case Count Approaches (Version 1.0)
2024
lira : LInear Regression in Astronomy (Version 2.0.1)
2015
list : Statistical Methods for the Item Count Technique and List Experiment (Version 9.2.6)
2010
llbayesireg : The L-Logistic Bayesian Regression (Version 1.0.0)
2019
lmls : Gaussian Location-Scale Regression (Version 0.1.0)
2022
lsirm12pl : Latent Space Item Response Model (Version 1.3.1)
2022
lvmcomp : Stochastic EM Algorithms for Latent Variable Models with a High-Dimensional Latent Space (Version 1.2)
2018
marked : Mark-Recapture Analysis for Survival and Abundance Estimation (Version 1.2.8)
2013
mcgibbsit : Warnes and Raftery's 'MCGibbsit' MCMC Run Length and Convergence Diagnostic (Version 1.2.2)
2004
mcmcOutput : Functions to Store, Manipulate and Display Markov Chain Monte Carlo (MCMC) Output (Version 0.1.3)
2020
mcmcderive : Derive MCMC Parameters (Version 0.1.2)
2019
mcmcensemble : Ensemble Sampler for Affine-Invariant MCMC (Version 3.1.0)
2020
mcmcplots : Create Plots from MCMC Output (Version 0.4.3)
2010
mcmcr : Manipulate MCMC Samples (Version 0.6.1)
2018
mcmcsae : Markov Chain Monte Carlo Small Area Estimation (Version 0.7.7)
2020
mcp : Regression with Multiple Change Points (Version 0.3.4)
2020
mdmb : Model Based Treatment of Missing Data (Version 1.8-7)
2017
metaBMA : Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis (Version 0.6.9)
2017
metamisc : Meta-Analysis of Diagnosis and Prognosis Research Studies (Version 0.4.0)
2012
metropolis : The Metropolis Algorithm (Version 0.1.8)
2020
miWQS : Multiple Imputation Using Weighted Quantile Sum Regression (Version 0.4.4)
2018
miceadds : Some Additional Multiple Imputation Functions, Especially for 'mice' (Version 3.17-44)
2014
midas2 : Bayesian Platform Design with Subgroup Efficacy Exploration(MIDAS-2) (Version 1.1.0)
2021
missingHE : Missing Outcome Data in Health Economic Evaluation (Version 1.5.0)
2019
mixAK : Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering (Version 5.7)
2009
morse : Modelling Reproduction and Survival Data in Ecotoxicology (Version 3.3.2)
2014
motmot : Models of Trait Macroevolution on Trees (Version 2.1.3)
2012
msaeHB : Multivariate Small Area Estimation using Hierarchical Bayesian Method (Version 0.1.0)
2022
mtarm : Bayesian Estimation of Multivariate Threshold Autoregressive Models (Version 0.1.0)
2024
multibridge : Evaluating Multinomial Order Restrictions with Bridge Sampling (Version 1.2.0)
2021
multimark : Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks (Version 2.1.6)
2015
multinomialLogitMix : Clustering Multinomial Count Data under the Presence of Covariates (Version 1.1)
2022
multinomineq : Bayesian Inference for Multinomial Models with Inequality Constraints (Version 0.2.6)
2019
multiocc : Fits Multivariate Spatio-Temporal Occupancy Model (Version 0.2.1)
2022
nLTT : Calculate the NLTT Statistic (Version 1.4.9)
2015
neojags : Neo-Normal Distributions Family for Markov Chain Monte Carlo (MCMC) Models in 'JAGS' (Version 0.1.4)
2023
netcmc : Spatio-Network Generalised Linear Mixed Models for Areal Unit and Network Data (Version 1.0.2)
2022
nimble : MCMC, Particle Filtering, and Programmable Hierarchical Modeling (Version 1.1.0)
2016
nimbleAPT : Adaptive Parallel Tempering for 'NIMBLE' (Version 1.0.6)
2021
nimbleCarbon : Bayesian Analyses of Radiocarbon Dates with NIMBLE (Version 0.2.5)
2021
nimbleNoBounds : Transformed Distributions for Improved MCMC Efficiency (Version 1.0.2)
2022
nimbleSCR : Spatial Capture-Recapture (SCR) Methods Using 'nimble' (Version 0.2.1)
2020
nlist : Lists of Numeric Atomic Objects (Version 0.3.3)
2020
nmathresh : Thresholds and Invariant Intervals for Network Meta-Analysis (Version 0.1.6)
2018
noisyCE2 : Cross-Entropy Optimisation of Noisy Functions (Version 1.1.0)
2019
nse : Numerical Standard Errors Computation in R (Version 1.21)
2017
optimalThreshold : Bayesian Methods for Optimal Threshold Estimation (Version 1.0)
2020
ordinalbayes : Bayesian Ordinal Regression for High-Dimensional Data (Version 0.1.1)
2022
outbreaker2 : Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data (Version 1.1.3)
2017
parameters : Processing of Model Parameters (Version 0.21.6)
2019
pcnetmeta : Patient-Centered Network Meta-Analysis (Version 2.8)
2014
pexm : Loading a JAGS Module for the Piecewise Exponential Distribution (Version 1.1.3)
2020
phase1RMD : Repeated Measurement Design for Phase I Clinical Trial (Version 1.0.9)
2017
phase1PRMD : Personalized Repeated Measurement Design for Phase I Clinical Trials (Version 1.0.2)
2019
phytools : Phylogenetic Tools for Comparative Biology (and Other Things) (Version 2.1-1)
2011
plotMCMC : MCMC Diagnostic Plots (Version 2.0.1)
2014
pmwg : Particle Metropolis Within Gibbs (Version 0.2.7)
2020
polySegratioMM : Bayesian Mixture Models for Marker Dosage in Autopolyploids (Version 0.6-4)
2009
pomp : Statistical Inference for Partially Observed Markov Processes (Version 5.7)
2007
pompp : Presence-Only for Marked Point Process (Version 0.1.3)
2022
popReconstruct : Reconstruct Human Populations of the Recent Past (Version 1.0-6)
2012
postpack : Utilities for Processing Posterior Samples Stored in 'mcmc.lists' (Version 0.5.4)
2020
prevalence : Tools for Prevalence Assessment Studies (Version 0.4.1)
2013
pscl : Political Science Computational Laboratory (Version 1.5.9)
2005
ptycho : Bayesian Variable Selection with Hierarchical Priors (Version 1.1-4)
2015
purgeR : Inbreeding-Purging Estimation in Pedigreed Populations (Version 1.8.2)
2021
qgg : Statistical Tools for Quantitative Genetic Analyses (Version 1.1.2)
2019
qrjoint : Joint Estimation in Linear Quantile Regression (Version 2.0-9)
2015
r4ss : R Code for Stock Synthesis (Version 1.44.0)
2009
ramps : Bayesian Geostatistical Modeling with RAMPS (Version 0.6.18)
2007
ratematrix : Bayesian Estimation of the Evolutionary Rate Matrix (Version 1.2.4)
2018
rater : Statistical Models of Repeated Categorical Rating Data (Version 1.3.1)
2020
rbacon : Age-Depth Modelling using Bayesian Statistics (Version 3.2.0)
2017
rbi : Interface to 'LibBi' (Version 1.0.0)
2016
redist : Simulation Methods for Legislative Redistricting (Version 4.2.0)
2015
ref.ICAR : Objective Bayes Intrinsic Conditional Autoregressive Model for Areal Data (Version 2.0.1)
2018
relevent : Relational Event Models (Version 1.2-1)
2012
remiod : Reference-Based Multiple Imputation for Ordinal/Binary Response (Version 1.0.2)
2022
rjags : Bayesian Graphical Models using MCMC (Version 4-15)
2008
rjmcmc : Reversible-Jump MCMC Using Post-Processing (Version 0.4.5)
2017
robustsae : Robust Bayesian Small Area Estimation (Version 0.1.0)
2016
rpm : Modeling of Revealed Preferences Matchings (Version 0.7-3)
2023
rr : Statistical Methods for the Randomized Response Technique (Version 1.4.2)
2015
rstan : R Interface to Stan (Version 2.32.6)
2015
rtmpt : Fitting (Exponential/Diffusion) RT-MPT Models (Version 2.0-1)
2019
runMCMCbtadjust : Runs Monte Carlo Markov Chain - With Either 'JAGS', 'nimble' or 'greta' - While Adjusting Burn-in and Thinning Parameters (Version 1.1.0)
2023
runjags : Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS (Version 2.2.2-4)
2008
rwty : R We There Yet? Visualizing MCMC Convergence in Phylogenetics (Version 1.0.2)
2016
saeHB.ME.beta : SAE with Measurement Error using HB under Beta Distribution (Version 1.1.0)
2023
saeHB.ME : Small Area Estimation with Measurement Error using Hierarchical Bayesian Method (Version 1.0.1)
2022
saeHB.ZIB : Small Area Estimation using Hierarchical Bayesian under Zero Inflated Binomial Distribution (Version 0.1.1)
2022
saeHB.panel.beta : Small Area Estimation using HB for Rao Yu Model under Beta Distribution (Version 0.1.3)
2023
saeHB.panel : Small Area Estimation using Hierarchical Bayesian Method for Rao Yu Model (Version 0.1.1)
2022
saeHB : Small Area Estimation using Hierarchical Bayesian Method (Version 0.2.2)
2021
saeHB.unit : Basic Unit Level Model using Hierarchical Bayesian Approach (Version 0.1.0)
2023
sbde : Semiparametric Bayesian Density Estimation (Version 1.0-1)
2022
scape : Statistical Catch-at-Age Plotting Environment (Version 2.3.3)
2005
season : Seasonal Analysis of Health Data (Version 0.3.15)
2009
seeds : Estimate Hidden Inputs using the Dynamic Elastic Net (Version 0.9.1)
2020
shinystan : Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models (Version 2.6.0)
2015
shrinkDSM : Efficient Bayesian Inference for Dynamic Survival Models with Shrinkage (Version 0.2.0)
2021
shrinkTVP : Efficient Bayesian Inference for Time-Varying Parameter Models with Shrinkage (Version 3.0.1)
2019
simlandr : Simulation-Based Landscape Construction for Dynamical Systems (Version 0.3.1)
2021
simpleMH : Simple Metropolis-Hastings MCMC Algorithm (Version 0.1.1)
2021
sirt : Supplementary Item Response Theory Models (Version 4.1-15)
2013
slfm : Fitting a Bayesian Sparse Latent Factor Model in Gene Expression Analysis (Version 1.0.2)
2014
snSMART : Small N Sequential Multiple Assignment Randomized Trial Methods (Version 0.2.3)
2022
sns : Stochastic Newton Sampler (SNS) (Version 1.2.2)
2014
spAbundance : Univariate and Multivariate Spatial Modeling of Species Abundance (Version 0.1.3)
2023
spBayes : Univariate and Multivariate Spatial-Temporal Modeling (Version 0.4-7)
2006
spBFA : Spatial Bayesian Factor Analysis (Version 1.3)
2019
spBayesSurv : Bayesian Modeling and Analysis of Spatially Correlated Survival Data (Version 1.1.8)
2014
spCP : Spatially Varying Change Points (Version 1.3)
2018
spNNGP : Spatial Regression Models for Large Datasets using Nearest Neighbor Gaussian Processes (Version 1.0.0)
2017
spOccupancy : Single-Species, Multi-Species, and Integrated Spatial Occupancy Models (Version 0.7.6)
2021
spTDyn : Spatially Varying and Spatio-Temporal Dynamic Linear Models (Version 2.0.2)
2015
spTimer : Spatio-Temporal Bayesian Modelling (Version 3.3.2)
2012
sparsereg : Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data (Version 1.2)
2015
spatialreg : Spatial Regression Analysis (Version 1.3-2)
2019
sphet : Estimation of Spatial Autoregressive Models with and without Heteroskedastic Innovations (Version 2.0)
2010
spikeSlabGAM : Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models (Version 1.1-19)
2011
spsurv : Bernstein Polynomial Based Semiparametric Survival Analysis (Version 1.0.0)
2020
sspse : Estimating Hidden Population Size using Respondent Driven Sampling Data (Version 1.1.0-1)
2015
statnet.common : Common R Scripts and Utilities Used by the Statnet Project Software (Version 4.9.0)
2013
stocc : Fit a Spatial Occupancy Model via Gibbs Sampling (Version 1.31)
2012
stochvol : Efficient Bayesian Inference for Stochastic Volatility (SV) Models (Version 3.2.4)
2013
superdiag : A Comprehensive Test Suite for Testing Markov Chain Nonconvergence (Version 2.0)
2012
surveillance : Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena (Version 1.22.1)
2005
telefit : Estimation and Prediction for Remote Effects Spatial Process Models (Version 1.0.3)
2018
tergm : Fit, Simulate and Diagnose Models for Network Evolution Based on Exponential-Family Random Graph Models (Version 4.2.0)
2013
texreg : Conversion of R Regression Output to LaTeX or HTML Tables (Version 1.39.3)
2012
tidybayes : Tidy Data and 'Geoms' for Bayesian Models (Version 3.0.6)
2018
trialr : Clinical Trial Designs in 'rstan' (Version 0.1.6)
2017
vICC : Varying Intraclass Correlation Coefficients (Version 1.0.0)
2020
walker : Bayesian Generalized Linear Models with Time-Varying Coefficients (Version 1.0.8)
2017
wiqid : Quick and Dirty Estimates for Wildlife Populations (Version 0.3.3)
2016
womblR : Spatiotemporal Boundary Detection Model for Areal Unit Data (Version 1.0.5)
2017
wv : Wavelet Variance (Version 0.1.2)
2019
yuima : The YUIMA Project Package for SDEs (Version 1.15.27)
2014
zic : Bayesian Inference for Zero-Inflated Count Models (Version 0.9.1)
2009
zoib : Bayesian Inference for Beta Regression and Zero-or-One Inflated Beta Regression (Version 1.6)
2014
zoo : S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations) (Version 1.8-12)
2004
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RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
