Referenced by ⇅
Year
apTreeshape : Analyses of Phylogenetic Treeshape (Version 1.5-0.1)
2005
ArchaeoChron : Bayesian Modeling of Archaeological Chronologies (Version 0.1)
2017
bayesbr : Beta Regression on a Bayesian Model (Version 0.0.1.0)
2020
BayesSAE : Bayesian Analysis of Small Area Estimation (Version 1.0-2)
2013
BayesSPsurv : Bayesian Spatial Split Population Survival Model (Version 0.1.4)
2020
bcp : Bayesian Analysis of Change Point Problems (Version 4.0.3)
2006
bdpopt : Optimisation of Bayesian Decision Problems (Version 1.0-1)
2016
BEST : Bayesian Estimation Supersedes the t-Test (Version 0.5.4)
2013
BiProbitPartial : Bivariate Probit with Partial Observability (Version 1.0.3)
2019
cvam : Coarsened Variable Modeling (Version 0.9.3)
2021
dalmatian : Automating the Fitting of Double Linear Mixed Models in "JAGS"
and "nimble" (Version 1.0.0)
2018
DAMisc : Dave Armstrong"s Miscellaneous Functions (Version 1.7.2)
2010
hierarchicalDS : Functions to Perform Hierarchical Analysis of Distance Sampling
Data (Version 3.0)
2012
MasterBayes : ML and MCMC Methods for Pedigree Reconstruction and Analysis (Version 2.58)
2006
ocomposition : Regression for Rank-Indexed Compositional Data (Version 1.1)
2012
polyfreqs : Bayesian Population Genomics in Autopolyploids (Version 1.0.2)
2015
psychtm : Text Mining Methods for Psychological Research (Version 2021.1.0)
2021
rFIA : Estimation of Forest Variables using the FIA Database (Version 1.0.0)
2019
Rlda : Bayesian LDA for Mixed-Membership Clustering Analysis (Version 0.2.6)
2017
saeHB.gpois : SAE using HB Method under Generalized Poisson Distribution (Version 0.1.1)
2022
saeHB.hnb : Small Area Estimation under Hurdle Negative Binomial
Distribution using Hierarchical Bayesian Method (Version 0.1.2)
2022
saeHB.spatial : Small Area Estimation under Spatial SAR Model using Hierarchical
Bayesian Method (Version 0.1.0)
2022
saeHB.twofold : Hierarchical Bayes Twofold Subarea Level Model SAE (Version 0.1.1)
2022
saeHB.zinb : Small Area Estimation using Hierarchical Bayesian under Zero
Inflated Negative Binomial Distribution (Version 0.1.1)
2022
spflow : Spatial Econometric Interaction Models (Version 0.1.0)
2021
mcmcabn : Flexible Implementation of a Structural MCMC Sampler for DAGs (Version 0.6)
2019
tRophicPosition : Bayesian Trophic Position Estimation with Stable Isotopes (Version 0.8.0)
2017
eiCompare : Compares Different Ecological Inference Methods (Version 3.0.4)
2016
CARlasso : Conditional Autoregressive LASSO (Version 0.1.2)
2021
bite : Bayesian Integrative Models of Trait Evolution (Version 0.3)
2020
BayesMassBal : Bayesian Data Reconciliation of Separation Processes (Version 1.1.0)
2020
bhpm : Bayesian Hierarchical Poisson Models for Multiple Grouped Outcomes with Clustering (Version 1.7)
2020
elrm : Exact Logistic Regression via MCMC (Version 1.2.5)
2006
ptycho : Bayesian Variable Selection with Hierarchical Priors (Version 1.1-4)
2015
purgeR : Inbreeding-Purging Estimation in Pedigreed Populations (Version 1.8.2)
2021
qgg : Statistical Tools for Quantitative Genetic Analyses (Version 1.1.2)
2019
AHMbook : Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2 (Version 0.2.10)
2017
ASMbook : Functions for the Book "Applied Statistical Modeling for Ecologists" (Version 1.0.2)
2024
AdMit : Adaptive Mixture of Student-t Distributions (Version 2.1.9)
2008
AnaCoDa : Analysis of Codon Data under Stationarity using a Bayesian Framework (Version 0.1.4.4)
2018
ArchaeoPhases : Post-Processing of Markov Chain Monte Carlo Simulations for Chronological Modelling (Version 2.0)
2017
BANOVA : Hierarchical Bayesian ANOVA Models (Version 1.2.1)
2014
BAMBI : Bivariate Angular Mixture Models (Version 2.3.6)
2017
BAYSTAR : On Bayesian Analysis of Threshold Autoregressive Models (Version 0.2-10)
2008
BCClong : Bayesian Consensus Clustering for Multiple Longitudinal Features (Version 1.0.3)
2023
BCEA : Bayesian Cost Effectiveness Analysis (Version 2.4.6)
2012
BCHM : Clinical Trial Calculation Based on BCHM Design (Version 1.00)
2019
BDWreg : Bayesian Inference for Discrete Weibull Regression (Version 1.3.0)
2016
BEND : Bayesian Estimation of Nonlinear Data (BEND) (Version 1.0)
2024
BGGE : Bayesian Genomic Linear Models Applied to GE Genome Selection (Version 0.6.5)
2017
BGVAR : Bayesian Global Vector Autoregressions (Version 2.5.8)
2020
BMAmevt : Multivariate Extremes: Bayesian Estimation of the Spectral Measure (Version 1.0.5)
2013
BNPdensity : Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures (Version 2023.3.8)
2011
BNPmix : Bayesian Nonparametric Mixture Models (Version 1.0.2)
2019
BNSP : Bayesian Non- And Semi-Parametric Model Fitting (Version 2.2.3)
2014
BRugs : Interface to the 'OpenBUGS' MCMC Software (Version 0.9-2.1)
2005
BSL : Bayesian Synthetic Likelihood (Version 3.2.5)
2018
BSPADATA : Bayesian Proposal to Fit Spatial Econometric Models (Version 1.1.0)
2018
BSTZINB : Association Among Disease Counts and Socio-Environmental Factors (Version 1.0.1)
2024
BTSPAS : Bayesian Time-Stratified Population Analysis (Version 2024.11.1)
2010
BTYDplus : Probabilistic Models for Assessing and Predicting your Customer Base (Version 1.2.0)
2016
BVAR : Hierarchical Bayesian Vector Autoregression (Version 1.0.5)
2019
BaM : Functions and Datasets for "Bayesian Methods: A Social and Behavioral Sciences Approach" (Version 1.0.3)
2008
BayLum : Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating (Version 0.3.2)
2017
BayesARIMAX : Bayesian Estimation of ARIMAX Model (Version 0.1.1)
2020
BayesBEKK : Bayesian Estimation of Bivariate Volatility Model (Version 0.1.1)
2019
BayesBinMix : Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions (Version 1.4.1)
2016
BayesCACE : Bayesian Model for CACE Analysis (Version 1.2.3)
2021
BayesComm : Bayesian Community Ecology Analysis (Version 0.1-2)
2014
BayesDissolution : Bayesian Models for Dissolution Testing (Version 0.2.1)
2022
BayesFM : Bayesian Inference for Factor Modeling (Version 0.1.7)
2016
BayesFactor : Computation of Bayes Factors for Common Designs (Version 0.9.12-4.7)
2012
BayesGWQS : Bayesian Grouped Weighted Quantile Sum Regression (Version 0.1.1)
2020
BayesLCA : Bayesian Latent Class Analysis (Version 1.9)
2012
BayesLN : Bayesian Inference for Log-Normal Data (Version 0.2.10)
2020
BayesMFSurv : Bayesian Misclassified-Failure Survival Model (Version 0.1.0)
2019
BayesOrdDesign : Bayesian Group Sequential Design for Ordinal Data (Version 0.1.2)
2021
BayesPostEst : Generate Postestimation Quantities for Bayesian MCMC Estimation (Version 0.3.2)
2019
BayesRS : Bayes Factors for Hierarchical Linear Models with Continuous Predictors (Version 0.1.3)
2017
BayesTools : Tools for Bayesian Analyses (Version 0.2.17)
2021
BayesTwin : Bayesian Analysis of Item-Level Twin Data (Version 1.0)
2017
BayesX : R Utilities Accompanying the Software Package BayesX (Version 0.3-3)
2009
BayesianFactorZoo : Bayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models (Version 0.0.0.3)
2023
BayesianTools : General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics (Version 0.1.8)
2017
Bayesrel : Bayesian Reliability Estimation (Version 0.7.7)
2019
Bchron : Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling (Version 4.7.6)
2008
Bergm : Bayesian Exponential Random Graph Models (Version 5.0.7)
2009
BiDAG : Bayesian Inference for Directed Acyclic Graphs (Version 2.1.4)
2017
BiostatsUHNplus : Nested Data Summary, Adverse Events and REDCap (Version 0.0.10)
2023
CARBayes : Spatial Generalised Linear Mixed Models for Areal Unit Data (Version 6.1.1)
2012
CARBayesST : Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data (Version 4.0)
2014
COMIX : Coarsened Mixtures of Hierarchical Skew Kernels (Version 1.0.0)
2022
CircSpaceTime : Spatial and Spatio-Temporal Bayesian Model for Circular Data (Version 0.9.0)
2019
ContRespPP : Predictive Probability for a Continuous Response with an ANOVA Structure (Version 0.4.2)
2022
DBR : Discrete Beta Regression (Version 1.4.1)
2022
DGP4LCF : Dependent Gaussian Processes for Longitudinal Correlated Factors (Version 1.0.0)
2024
DPP : Inference of Parameters of Normal Distributions from a Mixture of Normals (Version 0.1.2)
2017
DPTM : Dynamic Panel Multiple Threshold Model with Fixed Effects (Version 1.5.0)
2024
DrBats : Data Representation: Bayesian Approach That's Sparse (Version 0.1.6)
2016
EMC2 : Bayesian Hierarchical Analysis of Cognitive Models of Choice (Version 2.1.0)
2024
EcoDiet : Estimating a Diet Matrix from Biotracer and Stomach Content Data (Version 2.0.1)
2020
EpiEstim : Estimate Time Varying Reproduction Numbers from Epidemic Curves (Version 2.2-4)
2012
EpiILM : Spatial and Network Based Individual Level Models for Epidemics (Version 1.5.2)
2017
EpiILMCT : Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics (Version 1.1.7)
2017
EpiLPS : A Fast and Flexible Bayesian Tool for Estimating Epidemiological Parameters (Version 1.3.0)
2021
EpiModel : Mathematical Modeling of Infectious Disease Dynamics (Version 2.5.0)
2013
EvidenceSynthesis : Synthesizing Causal Evidence in a Distributed Research Network (Version 0.5.0)
2020
FAVAR : Bayesian Analysis of a FAVAR Model (Version 0.1.3)
2022
FME : A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis (Version 1.3.6.3)
2009
HDInterval : Highest (Posterior) Density Intervals (Version 0.2.4)
2016
HelpersMG : Tools for Environmental Analyses, Ecotoxicology and Various R Functions (Version 6.2)
2015
Hmsc : Hierarchical Model of Species Communities (Version 3.0-13)
2019
IFP : Identifying Functional Polymorphisms (Version 0.2.4)
2012
ISEtools : Ion Selective Electrodes Analysis Methods (Version 3.2.0)
2019
InSilicoVA : Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm (Version 1.4.0)
2015
JMbayes2 : Extended Joint Models for Longitudinal and Time-to-Event Data (Version 0.5-0)
2021
JointAI : Joint Analysis and Imputation of Incomplete Data (Version 1.0.6)
2018
LAM : Some Latent Variable Models (Version 0.7-22)
2017
LAWBL : Latent (Variable) Analysis with Bayesian Learning (Version 1.5.0)
2020
LDATS : Latent Dirichlet Allocation Coupled with Time Series Analyses (Version 0.3.0)
2019
LNIRT : LogNormal Response Time Item Response Theory Models (Version 0.5.1)
2016
Luminescence : Comprehensive Luminescence Dating Data Analysis (Version 0.9.25)
2012
MBNMAdose : Dose-Response MBNMA Models (Version 0.4.3)
2019
MCMC.OTU : Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology (Version 1.0.10)
2014
MCMC.qpcr : Bayesian Analysis of qRT-PCR Data (Version 1.2.4)
2013
MCMCglmm : MCMC Generalised Linear Mixed Models (Version 2.36)
2009
MCMCpack : Markov Chain Monte Carlo (MCMC) Package (Version 1.7-1)
2003
MCMCtreeR : Prepare MCMCtree Analyses and Plot Bayesian Divergence Time Analyses Estimates on Trees (Version 1.1)
2019
MCMCvis : Tools to Visualize, Manipulate, and Summarize MCMC Output (Version 0.16.3)
2016
MJMbamlss : Multivariate Joint Models with 'bamlss' (Version 0.1.0)
2023
MPTmultiverse : Multiverse Analysis of Multinomial Processing Tree Models (Version 0.4-2)
2018
MSGARCH : Markov-Switching GARCH Models (Version 2.51)
2016
MetaLandSim : Landscape and Range Expansion Simulation (Version 2.0.0)
2014
MetaStan : Bayesian Meta-Analysis via 'Stan' (Version 1.0.0)
2018
MethComp : Analysis of Agreement in Method Comparison Studies (Version 1.30.2)
2011
MfUSampler : Multivariate-from-Univariate (MfU) MCMC Sampler (Version 1.1.0)
2014
MigConnectivity : Estimate Migratory Connectivity for Migratory Animals (Version 0.4.7)
2024
MixSIAR : Bayesian Mixing Models in R (Version 3.1.12)
2016
MplusAutomation : An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus (Version 1.1.1)
2010
NMADiagT : Network Meta-Analysis of Multiple Diagnostic Tests (Version 0.1.2)
2020
NestedCategBayesImpute : Modeling, Imputing and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations (Version 1.2.1)
2016
NobBS : Nowcasting by Bayesian Smoothing (Version 1.0.0)
2020
PICBayes : Bayesian Models for Partly Interval-Censored Data (Version 1.0)
2021
PINstimation : Estimation of the Probability of Informed Trading (Version 0.1.2)
2022
PLMIX : Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for Partial Rankings/Orderings (Version 2.1.1)
2016
POUMM : The Phylogenetic Ornstein-Uhlenbeck Mixed Model (Version 2.1.7)
2017
PVAClone : Population Viability Analysis with Data Cloning (Version 0.1-7)
2012
PhaseType : Inference for Phase-Type Distributions (Version 0.3.0)
2011
R2BayesX : Estimate Structured Additive Regression Models with 'BayesX' (Version 1.1-5)
2012
R2OpenBUGS : Running OpenBUGS from R (Version 3.2-3.2.1)
2011
R2MLwiN : Running 'MLwiN' from Within R (Version 0.8-9)
2012
R2WinBUGS : Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS' (Version 2.1-22.1)
2004
R2admb : 'ADMB' to R Interface Functions (Version 0.7.16.3)
2011
R2jags : Using R to Run 'JAGS' (Version 0.8-9)
2008
RGE : Response from Genotype to Environment (Version 1.0)
2021
RMark : R Code for Mark Analysis (Version 3.0.0)
2011
RPANDA : Phylogenetic ANalyses of DiversificAtion (Version 2.3)
2014
RcmdrPlugin.RMTCJags : R MTC Jags 'Rcmdr' Plugin (Version 1.0-2)
2014
RoBSA : Robust Bayesian Survival Analysis (Version 1.0.2)
2022
SALTSampler : Efficient Sampling on the Simplex (Version 1.1.0)
2015
SAME : Seamless Adaptive Multi-Arm Multi-Stage Enrichment (Version 0.1.0)
2023
SIBER : Stable Isotope Bayesian Ellipses in R (Version 2.1.9)
2015
SeqFeatR : A Tool to Associate FASTA Sequences and Features (Version 0.3.1)
2014
SimBIID : Simulation-Based Inference Methods for Infectious Disease Models (Version 0.2.1)
2019
TAM : Test Analysis Modules (Version 4.2-21)
2013
TESS : Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events (Version 2.1.2)
2012
TransPhylo : Inference of Transmission Tree from a Dated Phylogeny (Version 1.4.5)
2020
TreeBUGS : Hierarchical Multinomial Processing Tree Modeling (Version 1.5.0)
2016
UPG : Efficient Bayesian Algorithms for Binary and Categorical Data Regression Models (Version 0.3.4)
2021
Ultimixt : Bayesian Analysis of Location-Scale Mixture Models using a Weakly Informative Prior (Version 2.1)
2015
XDNUTS : Discontinuous Hamiltonian Monte Carlo with Varying Trajectory Length (Version 1.5)
2024
Xcertainty : Estimating Lengths and Uncertainty from Photogrammetric Imagery (Version 1.0.1)
2024
adaptMCMC : Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler (Version 1.5)
2011
adaptsmoFMRI : Adaptive Smoothing of FMRI Data (Version 1.2)
2012
afdx : Diagnosis Performance Using Attributable Fraction (Version 1.1.1)
2021
agRee : Various Methods for Measuring Agreement (Version 0.5-3)
2012
aihuman : Experimental Evaluation of Algorithm-Assisted Human Decision-Making (Version 0.1.0)
2023
airGR : Suite of GR Hydrological Models for Precipitation-Runoff Modelling (Version 1.7.6)
2017
altmeta : Alternative Meta-Analysis Methods (Version 4.2)
2016
amen : Additive and Multiplicative Effects Models for Networks and Relational Data (Version 1.4.5)
2012
ammiBayes : Bayesian Ammi Model for Continuous Data (Version 1.0-2)
2022
aphylo : Statistical Inference and Prediction of Annotations in Phylogenetic Trees (Version 0.3-3)
2022
apollo : Tools for Choice Model Estimation and Application (Version 0.3.4)
2019
arm : Data Analysis Using Regression and Multilevel/Hierarchical Models (Version 1.14-4)
2007
auRoc : Various Methods to Estimate the AUC (Version 0.2-1)
2015
baclava : Bayesian Analysis of Cancer Latency with Auxiliary Variable Augmentation (Version 1.0)
2024
baker : "Nested Partially Latent Class Models" (Version 1.0.3)
2022
bamlss : Bayesian Additive Models for Location, Scale, and Shape (and Beyond) (Version 1.2-5)
2017
bamp : Bayesian Age-Period-Cohort Modeling and Prediction (Version 2.1.3)
2018
baorista : Bayesian Aoristic Analyses (Version 0.2.1)
2024
bartcs : Bayesian Additive Regression Trees for Confounder Selection (Version 1.2.2)
2022
bayesCureRateModel : Bayesian Cure Rate Modeling for Time-to-Event Data (Version 1.3)
2024
bayesDccGarch : Methods and Tools for Bayesian Dynamic Conditional Correlation GARCH(1,1) Model (Version 3.0.4)
2015
bayesGARCH : Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations (Version 2.1.10)
2008
bayesImageS : Bayesian Methods for Image Segmentation using a Potts Model (Version 0.6-1)
2016
bayesLife : Bayesian Projection of Life Expectancy (Version 5.2-0)
2011
bayesMRM : Bayesian Multivariate Receptor Modeling (Version 2.4.0)
2022
bayesMig : Bayesian Projection of Migration (Version 1.0-0)
2023
bayesPO : Bayesian Inference for Presence-Only Data (Version 0.5.0)
2021
bayesSurv : Bayesian Survival Regression with Flexible Error and Random Effects Distributions (Version 3.8)
2004
bayesTFR : Bayesian Fertility Projection (Version 7.4-4)
2010
bayesanova : Bayesian Inference in the Analysis of Variance via Markov Chain Monte Carlo in Gaussian Mixture Models (Version 1.6)
2019
bayescount : Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC (Version 0.9.99-9)
2007
bayesianVARs : MCMC Estimation of Bayesian Vectorautoregressions (Version 0.1.4)
2024
bayeslm : Efficient Sampling for Gaussian Linear Regression with Arbitrary Priors (Version 1.0.1)
2017
bayesmix : Bayesian Mixture Models with JAGS (Version 0.7-6)
2004
bayest : Effect Size Targeted Bayesian Two-Sample t-Tests via Markov Chain Monte Carlo in Gaussian Mixture Models (Version 1.5)
2019
bayesvl : Visually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan' (Version 0.8.5)
2019
bcf : Causal Inference using Bayesian Causal Forests (Version 2.0.2)
2018
bcgam : Bayesian Constrained Generalised Linear Models (Version 1.0)
2018
bfw : Bayesian Framework for Computational Modeling (Version 0.4.2)
2018
bgsmtr : Bayesian Group Sparse Multi-Task Regression (Version 0.7)
2016
bgumbel : Bimodal Gumbel Distribution (Version 0.0.3)
2021
bhm : Biomarker Threshold Models (Version 1.18)
2016
bipd : Bayesian Individual Patient Data Meta-Analysis using 'JAGS' (Version 0.3)
2022
bkmrhat : Parallel Chain Tools for Bayesian Kernel Machine Regression (Version 1.1.3)
2020
blapsr : Bayesian Inference with Laplace Approximations and P-Splines (Version 0.6.1)
2020
blatent : Bayesian Latent Variable Models (Version 0.1.2)
2020
blavaan : Bayesian Latent Variable Analysis (Version 0.5-6)
2015
bmstdr : Bayesian Modeling of Spatio-Temporal Data with R (Version 0.7.9)
2022
bnma : Bayesian Network Meta-Analysis using 'JAGS' (Version 1.6.0)
2019
boral : Bayesian Ordination and Regression AnaLysis (Version 2.0.2)
2014
bplsr : Bayesian partial least squares regression (Version 1.0.0)
0
bpr : Fitting Bayesian Poisson Regression (Version 1.0.8)
2021
brea : Bayesian Recurrent Events Analysis (Version 0.3.1)
2016
bridgesampling : Bridge Sampling for Marginal Likelihoods and Bayes Factors (Version 1.1-2)
2017
brms : Bayesian Regression Models using 'Stan' (Version 2.22.0)
2015
brokenstick : Broken Stick Model for Irregular Longitudinal Data (Version 2.5.0)
2020
broom.mixed : Tidying Methods for Mixed Models (Version 0.2.9.6)
2018
broom : Convert Statistical Objects into Tidy Tibbles (Version 1.0.7)
2014
bsam : Bayesian State-Space Models for Animal Movement (Version 1.1.3)
2016
bspcov : Bayesian Sparse Estimation of a Covariance Matrix (Version 1.0.0)
2024
bsreg : Bayesian Spatial Regression Models (Version 0.0.2)
2021
bssm : Bayesian Inference of Non-Linear and Non-Gaussian State Space Models (Version 2.0.2)
2017
btergm : Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood (Version 1.10.12)
2015
bvartools : Bayesian Inference of Vector Autoregressive and Error Correction Models (Version 0.2.4)
2019
c212 : Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes) (Version 1.0.1)
2017
camtrapR : Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses (Version 2.3.0)
2015
coalescentMCMC : MCMC Algorithms for the Coalescent (Version 0.4-4)
2012
compareMCMCs : Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines (Version 0.6.0)
2022
countSTAR : Flexible Modeling of Count Data (Version 1.0.2)
2023
cplm : Compound Poisson Linear Models (Version 0.7-12.1)
2011
crossnma : Cross-Design & Cross-Format Network Meta-Analysis and Regression (Version 1.2.0)
2022
ctmcd : Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data (Version 1.4.4)
2016
cubfits : Codon Usage Bias Fits (Version 0.1-4)
2014
dclone : Data Cloning and MCMC Tools for Maximum Likelihood Methods (Version 2.3-2)
2009
dcmle : Hierarchical Models Made Easy with Data Cloning (Version 0.4-1)
2011
deBInfer : Bayesian Inference for Differential Equations (Version 0.4.4)
2016
diagis : Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling (Version 0.2.3)
2016
dmbc : Model Based Clustering of Binary Dissimilarity Measurements (Version 1.0.3)
2020
doublIn : Estimate Incubation or Latency Time using Doubly Interval Censored Observations (Version 0.2.0)
2024
dreamer : Dose Response Models for Bayesian Model Averaging (Version 3.1.0)
2021
eSIR : Extended State-Space SIR Models (Version 0.4.2)
2021
eefAnalytics : Robust Analytical Methods for Evaluating Educational Interventions using Randomised Controlled Trials Designs (Version 1.1.3)
2017
eggCounts : Hierarchical Modelling of Faecal Egg Counts (Version 2.4)
2013
eiPack : Ecological Inference and Higher-Dimension Data Management (Version 0.2-2)
2006
embryogrowth : Tools to Analyze the Thermal Reaction Norm of Embryo Growth (Version 9.5)
2014
emdbook : Support Functions and Data for "Ecological Models and Data" (Version 1.3.13)
2007
emmeans : Estimated Marginal Means, aka Least-Squares Means (Version 1.10.5)
2017
endorse : Bayesian Measurement Models for Analyzing Endorsement Experiments (Version 1.6.2)
2012
ergm : Fit, Simulate and Diagnose Exponential-Family Models for Networks (Version 4.7.5)
2008
ern : Effective Reproduction Number Estimation (Version 2.0.0)
2024
ergmito : Exponential Random Graph Models for Small Networks (Version 0.3-1)
2020
evolqg : Evolutionary Quantitative Genetics (Version 0.3-4)
2015
evolvability : Calculation of Evolvability Parameters (Version 2.0.0)
2014
ewoc : Escalation with Overdose Control (Version 0.3.0)
2017
exdqlm : Extended Dynamic Quantile Linear Models (Version 0.1.3)
2021
fabMix : Overfitting Bayesian Mixtures of Factor Analyzers with Parsimonious Covariance and Unknown Number of Components (Version 5.1)
2018
factor.switching : Post-Processing MCMC Outputs of Bayesian Factor Analytic Models (Version 1.4)
2020
factorstochvol : Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models (Version 1.1.0)
2016
fdasrvf : Elastic Functional Data Analysis (Version 2.3.3)
2012
fitode : Tools for Ordinary Differential Equations Model Fitting (Version 0.1.1)
2022
fmcmc : A friendly MCMC framework (Version 0.5-2)
2019
gap : Genetic Analysis Package (Version 1.6)
2004
gconsensus : Consensus Value Constructor (Version 0.3.2)
2020
geiger : Analysis of Evolutionary Diversification (Version 2.0.11)
2007
gemtc : Network Meta-Analysis Using Bayesian Methods (Version 1.0-2)
2012
genMCMCDiag : Generalized Convergence Diagnostics for Difficult MCMC Algorithms (Version 0.2.2)
2024
geoBayes : Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods (Version 0.7.4)
2014
gfiExtremes : Generalized Fiducial Inference for Extremes (Version 1.0.1)
2020
ggdmc : Cognitive Models (Version 0.2.6.0)
2016
ggmcmc : Tools for Analyzing MCMC Simulations from Bayesian Inference (Version 1.5.1.1)
2012
glmmTMB : Generalized Linear Mixed Models using Template Model Builder (Version 1.1.10)
2017
glmmfields : Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling (Version 0.1.8)
2018
greta : Simple and Scalable Statistical Modelling in R (Version 0.4.5)
2017
hSDM : Hierarchical Bayesian Species Distribution Models (Version 1.4.4)
2012
handwriter : Handwriting Analysis in R (Version 3.2.1)
2021
hdpGLM : Hierarchical Dirichlet Process Generalized Linear Models (Version 1.0.3)
2020
icenReg : Regression Models for Interval Censored Data (Version 2.0.16)
2015
icensBKL : Accompanion to the Book on Interval Censoring by Bogaerts, Komarek, and Lesaffre (Version 1.5)
2017
immer : Item Response Models for Multiple Ratings (Version 1.5-13)
2015
isotracer : Isotopic Tracer Analysis Using MCMC (Version 1.1.7)
2021
ivdoctr : Ensures Mutually Consistent Beliefs When Using IVs (Version 1.0.1)
2020
jSDM : Joint Species Distribution Models (Version 0.2.6)
2019
jagsUI : A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses (Version 1.6.2)
2015
jagstargets : Targets for JAGS Pipelines (Version 1.2.1)
2021
krige : Geospatial Kriging with Metropolis Sampling (Version 0.6.2)
2018
latentnet : Latent Position and Cluster Models for Statistical Networks (Version 2.11.0)
2005
lcra : Bayesian Joint Latent Class and Regression Models (Version 1.1.5)
2020
linelistBayes : Bayesian Analysis of Epidemic Data Using Line List and Case Count Approaches (Version 1.0)
2024
lira : LInear Regression in Astronomy (Version 2.0.1)
2015
list : Statistical Methods for the Item Count Technique and List Experiment (Version 9.2.6)
2010
llbayesireg : The L-Logistic Bayesian Regression (Version 1.0.0)
2019
lmls : Gaussian Location-Scale Regression (Version 0.1.0)
2022
lsirm12pl : Latent Space Item Response Model (Version 1.3.3)
2022
lvmcomp : Stochastic EM Algorithms for Latent Variable Models with a High-Dimensional Latent Space (Version 1.2)
2018
marked : Mark-Recapture Analysis for Survival and Abundance Estimation (Version 1.2.8)
2013
mcgibbsit : Warnes and Raftery's 'MCGibbsit' MCMC Run Length and Convergence Diagnostic (Version 1.2.2)
2004
mcmcOutput : Functions to Store, Manipulate and Display Markov Chain Monte Carlo (MCMC) Output (Version 0.1.3)
2020
mcmcderive : Derive MCMC Parameters (Version 0.1.2)
2019
mcmcensemble : Ensemble Sampler for Affine-Invariant MCMC (Version 3.1.0)
2020
mcmcplots : Create Plots from MCMC Output (Version 0.4.3)
2010
mcmcr : Manipulate MCMC Samples (Version 0.6.1)
2018
mcmcsae : Markov Chain Monte Carlo Small Area Estimation (Version 0.7.7)
2020
mcp : Regression with Multiple Change Points (Version 0.3.4)
2020
mdmb : Model Based Treatment of Missing Data (Version 1.9-22)
2017
metaBMA : Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis (Version 0.6.9)
2017
metamisc : Meta-Analysis of Diagnosis and Prognosis Research Studies (Version 0.4.0)
2012
metropolis : The Metropolis Algorithm (Version 0.1.8)
2020
miWQS : Multiple Imputation Using Weighted Quantile Sum Regression (Version 0.4.4)
2018
miceadds : Some Additional Multiple Imputation Functions, Especially for 'mice' (Version 3.17-44)
2014
midas2 : Bayesian Platform Design with Subgroup Efficacy Exploration(MIDAS-2) (Version 1.1.0)
2021
missingHE : Missing Outcome Data in Health Economic Evaluation (Version 1.5.0)
2019
mixAK : Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering (Version 5.8)
2009
modelbased : Estimation of Model-Based Predictions, Contrasts and Means (Version 0.8.9)
2020
morse : Modelling Reproduction and Survival Data in Ecotoxicology (Version 3.3.4)
2014
motmot : Models of Trait Macroevolution on Trees (Version 2.1.3)
2012
msaeHB : Multivariate Small Area Estimation using Hierarchical Bayesian Method (Version 0.1.0)
2022
mtarm : Bayesian Estimation of Multivariate Threshold Autoregressive Models (Version 0.1.2)
2024
multibridge : Evaluating Multinomial Order Restrictions with Bridge Sampling (Version 1.2.0)
2021
multimark : Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks (Version 2.1.6)
2015
multinomialLogitMix : Clustering Multinomial Count Data under the Presence of Covariates (Version 1.1)
2022
multinomineq : Bayesian Inference for Multinomial Models with Inequality Constraints (Version 0.2.6)
2019
multiocc : Fits Multivariate Spatio-Temporal Occupancy Model (Version 0.2.1)
2022
mvgam : Multivariate (Dynamic) Generalized Additive Models (Version 1.1.3)
2024
nLTT : Calculate the NLTT Statistic (Version 1.4.9)
2015
neojags : Neo-Normal Distributions Family for Markov Chain Monte Carlo (MCMC) Models in 'JAGS' (Version 0.1.5)
2023
netcmc : Spatio-Network Generalised Linear Mixed Models for Areal Unit and Network Data (Version 1.0.2)
2022
nimble : MCMC, Particle Filtering, and Programmable Hierarchical Modeling (Version 1.2.1)
2016
nimbleAPT : Adaptive Parallel Tempering for 'NIMBLE' (Version 1.0.6)
2021
nimbleCarbon : Bayesian Analyses of Radiocarbon Dates with NIMBLE (Version 0.2.5)
2021
nimbleNoBounds : Transformed Distributions for Improved MCMC Efficiency (Version 1.0.3)
2022
nimbleSCR : Spatial Capture-Recapture (SCR) Methods Using 'nimble' (Version 0.2.1)
2020
nlist : Lists of Numeric Atomic Objects (Version 0.3.3)
2020
nmathresh : Thresholds and Invariant Intervals for Network Meta-Analysis (Version 0.1.6)
2018
noisyCE2 : Cross-Entropy Optimisation of Noisy Functions (Version 1.1.0)
2019
nse : Numerical Standard Errors Computation in R (Version 1.21)
2017
optimalThreshold : Bayesian Methods for Optimal Threshold Estimation (Version 1.0)
2020
ordinalbayes : Bayesian Ordinal Regression for High-Dimensional Data (Version 0.1.1)
2022
outbreaker2 : Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data (Version 1.1.3)
2017
parameters : Processing of Model Parameters (Version 0.23.0)
2019
pcnetmeta : Patient-Centered Network Meta-Analysis (Version 2.8)
2014
pexm : Loading a JAGS Module for the Piecewise Exponential Distribution (Version 1.1.3)
2020
phase1RMD : Repeated Measurement Design for Phase I Clinical Trial (Version 1.0.9)
2017
phase1PRMD : Personalized Repeated Measurement Design for Phase I Clinical Trials (Version 1.0.2)
2019
phytools : Phylogenetic Tools for Comparative Biology (and Other Things) (Version 2.3-0)
2011
plotMCMC : MCMC Diagnostic Plots (Version 2.0.1)
2014
pmwg : Particle Metropolis Within Gibbs (Version 0.2.7)
2020
polySegratioMM : Bayesian Mixture Models for Marker Dosage in Autopolyploids (Version 0.6-4)
2009
pomp : Statistical Inference for Partially Observed Markov Processes (Version 5.11)
2007
pompp : Presence-Only for Marked Point Process (Version 0.1.3)
2022
popReconstruct : Reconstruct Human Populations of the Recent Past (Version 1.0-6)
2012
postpack : Utilities for Processing Posterior Samples Stored in 'mcmc.lists' (Version 0.5.4)
2020
prevalence : Tools for Prevalence Assessment Studies (Version 0.4.1)
2013
pscl : Political Science Computational Laboratory (Version 1.5.9)
2005
qrjoint : Joint Estimation in Linear Quantile Regression (Version 2.0-9)
2015
r4ss : R Code for Stock Synthesis (Version 1.44.0)
2009
ramps : Bayesian Geostatistical Modeling with RAMPS (Version 0.6.18)
2007
ratematrix : Bayesian Estimation of the Evolutionary Rate Matrix (Version 1.2.4)
2018
rater : Statistical Models of Repeated Categorical Rating Data (Version 1.3.1)
2020
rbacon : Age-Depth Modelling using Bayesian Statistics (Version 3.3.1)
2017
rbi : Interface to 'LibBi' (Version 1.0.0)
2016
redist : Simulation Methods for Legislative Redistricting (Version 4.2.0)
2015
ref.ICAR : Objective Bayes Intrinsic Conditional Autoregressive Model for Areal Data (Version 2.0.1)
2018
relevent : Relational Event Models (Version 1.2-1)
2010
remiod : Reference-Based Multiple Imputation for Ordinal/Binary Response (Version 1.0.2)
2022
rjags : Bayesian Graphical Models using MCMC (Version 4-16)
2008
rjmcmc : Reversible-Jump MCMC Using Post-Processing (Version 0.4.5)
2017
robustsae : Robust Bayesian Small Area Estimation (Version 0.1.0)
2016
rpm : Modeling of Revealed Preferences Matchings (Version 0.7-3)
2023
rr : Statistical Methods for the Randomized Response Technique (Version 1.4.2)
2015
rstan : R Interface to Stan (Version 2.32.6)
2015
rtmpt : Fitting (Exponential/Diffusion) RT-MPT Models (Version 2.0-1)
2019
runMCMCbtadjust : Runs Monte Carlo Markov Chain - With Either 'JAGS', 'nimble' or 'greta' - While Adjusting Burn-in and Thinning Parameters (Version 1.1.2)
2023
runjags : Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS (Version 2.2.2-4)
2008
rwty : R We There Yet? Visualizing MCMC Convergence in Phylogenetics (Version 1.0.2)
2016
saeHB.ME.beta : SAE with Measurement Error using HB under Beta Distribution (Version 1.1.0)
2023
saeHB.ME : Small Area Estimation with Measurement Error using Hierarchical Bayesian Method (Version 1.0.1)
2022
saeHB.ZIB : Small Area Estimation using Hierarchical Bayesian under Zero Inflated Binomial Distribution (Version 0.1.1)
2022
saeHB.panel.beta : Small Area Estimation using HB for Rao Yu Model under Beta Distribution (Version 0.1.5)
2023
saeHB.panel : Small Area Estimation using Hierarchical Bayesian Method for Rao Yu Model (Version 0.1.1)
2022
saeHB : Small Area Estimation using Hierarchical Bayesian Method (Version 0.2.2)
2021
saeHB.unit : Basic Unit Level Model using Hierarchical Bayesian Approach (Version 0.1.0)
2023
sbde : Semiparametric Bayesian Density Estimation (Version 1.0-1)
2022
scape : Statistical Catch-at-Age Plotting Environment (Version 2.3.5)
2005
season : Seasonal Analysis of Health Data (Version 0.3.15)
2009
seeds : Estimate Hidden Inputs using the Dynamic Elastic Net (Version 0.9.1)
2020
shinystan : Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models (Version 2.6.0)
2015
shrinkDSM : Efficient Bayesian Inference for Dynamic Survival Models with Shrinkage (Version 0.2.0)
2021
shrinkTVP : Efficient Bayesian Inference for Time-Varying Parameter Models with Shrinkage (Version 3.0.1)
2019
shrinkTVPVAR : Efficient Bayesian Inference for TVP-VAR-SV Models with Shrinkage (Version 0.1.1)
2024
simlandr : Simulation-Based Landscape Construction for Dynamical Systems (Version 0.3.1)
2021
simpleMH : Simple Metropolis-Hastings MCMC Algorithm (Version 0.1.1)
2021
sirt : Supplementary Item Response Theory Models (Version 4.1-15)
2013
slfm : Fitting a Bayesian Sparse Latent Factor Model in Gene Expression Analysis (Version 1.0.2)
2014
snSMART : Small N Sequential Multiple Assignment Randomized Trial Methods (Version 0.2.4)
2022
sns : Stochastic Newton Sampler (SNS) (Version 1.2.2)
2014
spAbundance : Univariate and Multivariate Spatial Modeling of Species Abundance (Version 0.2.1)
2023
spBFA : Spatial Bayesian Factor Analysis (Version 1.3)
2019
spBayes : Univariate and Multivariate Spatial-Temporal Modeling (Version 0.4-8)
2006
spBayesSurv : Bayesian Modeling and Analysis of Spatially Correlated Survival Data (Version 1.1.8)
2014
spCP : Spatially Varying Change Points (Version 1.3)
2018
spNNGP : Spatial Regression Models for Large Datasets using Nearest Neighbor Gaussian Processes (Version 1.0.1)
2017
spOccupancy : Single-Species, Multi-Species, and Integrated Spatial Occupancy Models (Version 0.7.6)
2021
spTDyn : Spatially Varying and Spatio-Temporal Dynamic Linear Models (Version 2.0.3)
2015
spTimer : Spatio-Temporal Bayesian Modelling (Version 3.3.3)
2012
sparsereg : Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data (Version 1.2)
2015
spatialreg : Spatial Regression Analysis (Version 1.3-5)
2019
sphet : Estimation of Spatial Autoregressive Models with and without Heteroskedastic Innovations (Version 2.0)
2010
spikeSlabGAM : Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models (Version 1.1-20)
2011
spsurv : Bernstein Polynomial Based Semiparametric Survival Analysis (Version 1.0.0)
2020
sspse : Estimating Hidden Population Size using Respondent Driven Sampling Data (Version 1.1.0-2)
2015
statnet.common : Common R Scripts and Utilities Used by the Statnet Project Software (Version 4.10.0)
2013
stocc : Fit a Spatial Occupancy Model via Gibbs Sampling (Version 1.31)
2012
stochvol : Efficient Bayesian Inference for Stochastic Volatility (SV) Models (Version 3.2.5)
2013
superdiag : A Comprehensive Test Suite for Testing Markov Chain Nonconvergence (Version 2.0)
2012
surveillance : Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena (Version 1.24.1)
2005
systemicrisk : Systemic Risk and Network Reconstruction (Version 0.4.3)
2015
tbea : Pre- And Post-Processing in Bayesian Evolutionary Analyses (Version 1.5.0)
2024
telefit : Estimation and Prediction for Remote Effects Spatial Process Models (Version 1.0.3)
2018
tergm : Fit, Simulate and Diagnose Models for Network Evolution Based on Exponential-Family Random Graph Models (Version 4.2.1)
2013
texreg : Conversion of R Regression Output to LaTeX or HTML Tables (Version 1.39.4)
2012
tidybayes : Tidy Data and 'Geoms' for Bayesian Models (Version 3.0.7)
2018
trialr : Clinical Trial Designs in 'rstan' (Version 0.1.6)
2017
unmconf : Modeling with Unmeasured Confounding (Version 1.0.0)
2023
vICC : Varying Intraclass Correlation Coefficients (Version 1.0.0)
2020
walker : Bayesian Generalized Linear Models with Time-Varying Coefficients (Version 1.0.10)
2017
wiqid : Quick and Dirty Estimates for Wildlife Populations (Version 0.3.3)
2016
womblR : Spatiotemporal Boundary Detection Model for Areal Unit Data (Version 1.0.5)
2017
wv : Wavelet Variance (Version 0.1.2)
2019
yuima : The YUIMA Project Package for SDEs (Version 1.15.27)
2014
zic : Bayesian Inference for Zero-Inflated Count Models (Version 0.9.1)
2009
zoib : Bayesian Inference for Beta Regression and Zero-or-One Inflated Beta Regression (Version 1.6)
2014
zoo : S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations) (Version 1.8-12)
2004
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