nimble: MCMC, Particle Filtering, and Programmable Hierarchical Modeling

Canonical link: https://rscholar.com/pkg/nimble

Perry de Valpine • Christopher Paciorek • Daniel Turek • Nick Michaud • Cliff Anderson-Bergman • Fritz Obermeyer • Claudia Wehrhahn Cortes • Abel Rodríguez • Duncan Temple Lang • Wei Zhang • Sally Paganin • Joshua Hug • Paul van Dam-Bates • Pólya-Gamma sampler, • Lauren Ponisio • Peter Sujan • View description and downloads View dependencies GitHub project

2016 Published

1.2.1 Version

0 Citations

16 Authors

Referenced by ⇅	Year
dalmatian: Automating the Fitting of Double Linear Mixed Models in "JAGS" and "nimble" (Version 1.0.0)	2018
bridgesampling: Bridge Sampling for Marginal Likelihoods and Bayes Factors (Version 1.1-2)	2017
nimbleAPT: Adaptive Parallel Tempering for 'NIMBLE' (Version 1.0.6)	2021
nimbleCarbon: Bayesian Analyses of Radiocarbon Dates with NIMBLE (Version 0.2.5)	2021
nimbleEcology: Distributions for Ecological Models in 'nimble' (Version 0.5.0)	2019
nimbleHMC: Hamiltonian Monte Carlo and Other Gradient-Based MCMC Sampling Algorithms for 'nimble' (Version 0.2.2)	2023
nimbleNoBounds: Transformed Distributions for Improved MCMC Efficiency (Version 1.0.3)	2022
nimbleSCR: Spatial Capture-Recapture (SCR) Methods Using 'nimble' (Version 0.2.1)	2020
nimbleSMC: Sequential Monte Carlo Methods for 'nimble' (Version 0.11.1)	2020
BayesNSGP: Bayesian Analysis of Non-Stationary Gaussian Process Models (Version 0.1.2)	2019
InvStablePrior: Inverse Stable Prior for Widely-Used Exponential Models (Version 0.1.1)	2022
Xcertainty: Estimating Lengths and Uncertainty from Photogrammetric Imagery (Version 1.0.1)	2024
baorista: Bayesian Aoristic Analyses (Version 0.2.1)	2024
bcgam: Bayesian Constrained Generalised Linear Models (Version 1.0)	2018
camtrapR: Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses (Version 2.3.0)	2015
compareMCMCs: Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines (Version 0.6.0)	2022
postpack: Utilities for Processing Posterior Samples Stored in 'mcmc.lists' (Version 0.5.4)	2020
runMCMCbtadjust: Runs Monte Carlo Markov Chain - With Either 'JAGS', 'nimble' or 'greta' - While Adjusting Burn-in and Thinning Parameters (Version 1.1.2)	2023
saeHB: Small Area Estimation using Hierarchical Bayesian Method (Version 0.2.2)	2021
scPloidy: Infer Ploidy of Single Cells (Version 0.6.2)	2022

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