rjags: Bayesian Graphical Models using MCMC

Canonical link: https://rscholar.com/pkg/rjags

Martyn Plummer • Alexey Stukalov • Matt Denwood • View description and downloads View dependencies GitHub project

2008 Published

4-16 Version

0 Citations

3 Authors

Referenced by ⇅	Year
ArchaeoChron: Bayesian Modeling of Archaeological Chronologies (Version 0.1)	2017
bdpopt: Optimisation of Bayesian Decision Problems (Version 1.0-1)	2016
BEST: Bayesian Estimation Supersedes the t-Test (Version 0.5.4)	2013
dalmatian: Automating the Fitting of Double Linear Mixed Models in "JAGS" and "nimble" (Version 1.0.0)	2018
HydeNet: Hybrid Bayesian Networks Using R and JAGS (Version 0.10.11)	2015
Replication: Test Replications by Means of the Prior Predictive p-Value (Version 0.1.2)	2019
saeHB.gpois: SAE using HB Method under Generalized Poisson Distribution (Version 0.1.1)	2022
saeHB.hnb: Small Area Estimation under Hurdle Negative Binomial Distribution using Hierarchical Bayesian Method (Version 0.1.2)	2022
saeHB.zinb: Small Area Estimation using Hierarchical Bayesian under Zero Inflated Negative Binomial Distribution (Version 0.1.1)	2022
tRophicPosition: Bayesian Trophic Position Estimation with Stable Isotopes (Version 0.8.0)	2017
expertsurv: Incorporate Expert Opinion with Parametric Survival Models (Version 1.3.0)	2023
MBNMAdose: Dose-Response MBNMA Models (Version 0.4.3)	2019
MBNMAtime: Run Time-Course Model-Based Network Meta-Analysis (MBNMA) Models (Version 0.2.4)	2019
BACCT: Bayesian Augmented Control for Clinical Trials (Version 1.0)	2016
BANOVA: Hierarchical Bayesian ANOVA Models (Version 1.2.1)	2014
BCEA: Bayesian Cost Effectiveness Analysis (Version 2.4.6)	2012
BCHM: Clinical Trial Calculation Based on BCHM Design (Version 1.00)	2019
BEND: Bayesian Estimation of Nonlinear Data (BEND) (Version 1.0)	2024
BayLum: Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating (Version 0.3.2)	2017
BayesCACE: Bayesian Model for CACE Analysis (Version 1.2.3)	2021
BayesGWQS: Bayesian Grouped Weighted Quantile Sum Regression (Version 0.1.1)	2020
BayesOrdDesign: Bayesian Group Sequential Design for Ordinal Data (Version 0.1.2)	2021
BayesPostEst: Generate Postestimation Quantities for Bayesian MCMC Estimation (Version 0.3.2)	2019
BayesRS: Bayes Factors for Hierarchical Linear Models with Continuous Predictors (Version 0.1.3)	2017
BayesTools: Tools for Bayesian Analyses (Version 0.2.17)	2021
BayesTwin: Bayesian Analysis of Item-Level Twin Data (Version 1.0)	2017
CCTpack: Consensus Analysis, Model-Based Clustering, and Cultural Consensus Theory Applications (Version 1.5.2)	2013
COMBO: Correcting Misclassified Binary Outcomes in Association Studies (Version 1.2.0)	2023
ContRespPP: Predictive Probability for a Continuous Response with an ANOVA Structure (Version 0.4.2)	2022
DHARMa: Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models (Version 0.4.7)	2016
EBASE: Estuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism (Version 1.1.0)	2024
EWOC.Comb: Escalation with Overdose Control using 2 Drug Combinations (Version 1.0)	2024
ISEtools: Ion Selective Electrodes Analysis Methods (Version 3.2.0)	2019
JointAI: Joint Analysis and Imputation of Incomplete Data (Version 1.0.6)	2018
Luminescence: Comprehensive Luminescence Dating Data Analysis (Version 0.9.26)	2012
MethComp: Analysis of Agreement in Method Comparison Studies (Version 1.30.2)	2011
NCC: Simulation and Analysis of Platform Trials with Non-Concurrent Controls (Version 1.0)	2023
NMADiagT: Network Meta-Analysis of Multiple Diagnostic Tests (Version 0.1.2)	2020
NobBS: Nowcasting by Bayesian Smoothing (Version 1.0.0)	2020
R2jags: Using R to Run 'JAGS' (Version 0.8-9)	2008
RcmdrPlugin.RMTCJags: R MTC Jags 'Rcmdr' Plugin (Version 1.0-2)	2014
RoBMA: Robust Bayesian Meta-Analyses (Version 3.1.0)	2020
RoBSA: Robust Bayesian Survival Analysis (Version 1.0.2)	2022
RobustBayesianCopas: Robust Bayesian Copas Selection Model (Version 2.0)	2020
SAME: Seamless Adaptive Multi-Arm Multi-Stage Enrichment (Version 0.1.0)	2023
SCpubr: Generate Publication Ready Visualizations of Single Cell Transcriptomics Data (Version 2.0.2)	2022
SIBER: Stable Isotope Bayesian Ellipses in R (Version 2.1.9)	2015
SurviMChd: High Dimensional Survival Data Analysis with Markov Chain Monte Carlo (Version 0.1.2)	2021
TreeBUGS: Hierarchical Multinomial Processing Tree Modeling (Version 1.5.0)	2016
abn: Modelling Multivariate Data with Additive Bayesian Networks (Version 3.1.1)	2011
afdx: Diagnosis Performance Using Attributable Fraction (Version 1.1.1)	2021
altmeta: Alternative Meta-Analysis Methods (Version 4.2)	2016
auRoc: Various Methods to Estimate the AUC (Version 0.2-1)	2015
bacistool: Bayesian Classification and Information Sharing (BaCIS) Tool for the Design of Multi-Group Phase II Clinical Trials (Version 1.0.0)	2018
baker: "Nested Partially Latent Class Models" (Version 1.0.3)	2022
bamdit: Bayesian Meta-Analysis of Diagnostic Test Data (Version 3.4.3)	2011
bamlss: Bayesian Additive Models for Location, Scale, and Shape (and Beyond) (Version 1.2-5)	2017
bayesMRM: Bayesian Multivariate Receptor Modeling (Version 2.4.0)	2022
bayescount: Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC (Version 0.9.99-9)	2007
bayesmix: Bayesian Mixture Models with JAGS (Version 0.7-6)	2004
bcrm: Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials (Version 0.5.4)	2012
bdribs: Bayesian Detection of Potential Risk Using Inference on Blinded Safety Data (Version 1.0.4)	2018
beaver: Bayesian Model Averaging of Covariate Adjusted Negative-Binomial Dose-Response (Version 1.0.0)	2024
bipd: Bayesian Individual Patient Data Meta-Analysis using 'JAGS' (Version 0.3)	2022
blavaan: Bayesian Latent Variable Analysis (Version 0.5-6)	2015
blrm: Dose Escalation Design in Phase I Oncology Trial Using Bayesian Logistic Regression Modeling (Version 1.0-2)	2019
bnma: Bayesian Network Meta-Analysis using 'JAGS' (Version 1.6.0)	2019
bridgesampling: Bridge Sampling for Marginal Likelihoods and Bayes Factors (Version 1.1-2)	2017
bsam: Bayesian State-Space Models for Animal Movement (Version 1.1.3)	2016
camtrapR: Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses (Version 2.3.0)	2015
compareMCMCs: Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines (Version 0.6.0)	2022
covafillr: Local Polynomial Regression of State Dependent Covariates in State-Space Models (Version 0.4.4)	2016
crmPack: Object-Oriented Implementation of CRM Designs (Version 1.0.6)	2015
crossnma: Cross-Design & Cross-Format Network Meta-Analysis and Regression (Version 1.2.0)	2022
dclone: Data Cloning and MCMC Tools for Maximum Likelihood Methods (Version 2.3-2)	2009
dcmle: Hierarchical Models Made Easy with Data Cloning (Version 0.4-1)	2011
doublIn: Estimate Incubation or Latency Time using Doubly Interval Censored Observations (Version 0.2.0)	2024
dreamer: Dose Response Models for Bayesian Model Averaging (Version 3.1.0)	2021
eSIR: Extended State-Space SIR Models (Version 0.4.2)	2021
eoa3: Wildlife Mortality Estimator for Low Fatality Rates and Imperfect Detection (Version 1.0.0.2)	2023
ern: Effective Reproduction Number Estimation (Version 2.0.0)	2024
ewoc: Escalation with Overdose Control (Version 0.3.0)	2017
gbs2ploidy: Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data (Version 1.0)	2016
gconsensus: Consensus Value Constructor (Version 0.3.2)	2020
gemtc: Network Meta-Analysis Using Bayesian Methods (Version 1.0-2)	2012
groupWQS: Grouped Weighted Quantile Sum Regression (Version 0.0.3)	2020
handwriter: Handwriting Analysis in R (Version 3.2.1)	2021
historicalborrow: Non-Longitudinal Bayesian Historical Borrowing Models (Version 1.1.0)	2022
jagsUI: A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses (Version 1.6.2)	2015
jagstargets: Targets for JAGS Pipelines (Version 1.2.2)	2021
jarbes: Just a Rather Bayesian Evidence Synthesis (Version 2.2.2)	2018
lcra: Bayesian Joint Latent Class and Regression Models (Version 1.1.5)	2020
lira: LInear Regression in Astronomy (Version 2.0.1)	2015
longit: High Dimensional Longitudinal Data Analysis Using MCMC (Version 0.1.0)	2021
lucid: Printing Floating Point Numbers in a Human-Friendly Format (Version 1.8)	2014
mcp: Regression with Multiple Change Points (Version 0.3.4)	2020
metamisc: Meta-Analysis of Diagnosis and Prognosis Research Studies (Version 0.4.0)	2012
morse: Modelling Reproduction and Survival Data in Ecotoxicology (Version 3.3.4)	2014
mrbayes: Bayesian Summary Data Models for Mendelian Randomization Studies (Version 0.5.2)	2019
msaeHB: Multivariate Small Area Estimation using Hierarchical Bayesian Method (Version 0.1.0)	2022
mvgam: Multivariate (Dynamic) Generalized Additive Models (Version 1.1.3)	2024
neojags: Neo-Normal Distributions Family for Markov Chain Monte Carlo (MCMC) Models in 'JAGS' (Version 0.1.5)	2023
nichetools: Complementary Package to 'nicheROVER' and 'SIBER' (Version 0.3.2)	2024
oncomsm: Bayesian Multi-State Models for Early Oncology (Version 0.1.4)	2022
optimalThreshold: Bayesian Methods for Optimal Threshold Estimation (Version 1.0)	2020
ordinalRR: Analysis of Repeatability and Reproducibility Studies with Ordinal Measurements (Version 1.1)	2018
pcnetmeta: Patient-Centered Network Meta-Analysis (Version 2.8)	2014
pexm: Loading a JAGS Module for the Piecewise Exponential Distribution (Version 1.1.3)	2020
phase1PRMD: Personalized Repeated Measurement Design for Phase I Clinical Trials (Version 1.0.2)	2019
phase1RMD: Repeated Measurement Design for Phase I Clinical Trial (Version 1.0.9)	2017
phenoCDM: Continuous Development Models for Incremental Time-Series Analysis (Version 0.1.3)	2018
pivmet: Pivotal Methods for Bayesian Relabelling and k-Means Clustering (Version 0.6.0)	2018
postpack: Utilities for Processing Posterior Samples Stored in 'mcmc.lists' (Version 0.5.4)	2020
prevalence: Tools for Prevalence Assessment Studies (Version 0.4.1)	2013
psborrow: Bayesian Dynamic Borrowing with Propensity Score (Version 0.2.1)	2021
remiod: Reference-Based Multiple Imputation for Ordinal/Binary Response (Version 1.0.2)	2022
runMCMCbtadjust: Runs Monte Carlo Markov Chain - With Either 'JAGS', 'nimble' or 'greta' - While Adjusting Burn-in and Thinning Parameters (Version 1.1.2)	2023
runjags: Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS (Version 2.2.2-4)	2008
saeHB.ME.beta: SAE with Measurement Error using HB under Beta Distribution (Version 1.1.0)	2023
saeHB.ME: Small Area Estimation with Measurement Error using Hierarchical Bayesian Method (Version 1.0.1)	2022
saeHB.ZIB: Small Area Estimation using Hierarchical Bayesian under Zero Inflated Binomial Distribution (Version 0.1.1)	2022
saeHB.panel.beta: Small Area Estimation using HB for Rao Yu Model under Beta Distribution (Version 0.1.5)	2023
saeHB.panel: Small Area Estimation using Hierarchical Bayesian Method for Rao Yu Model (Version 0.1.1)	2022
saeHB.spatial: Small Area Estimation Hierarchical Bayes For Spatial Model (Version 0.1.1)	2022
saeHB.twofold: Hierarchical Bayes Twofold Subarea Level Model SAE (Version 0.1.1)	2022
saeHB: Small Area Estimation using Hierarchical Bayesian Method (Version 0.2.2)	2021
saeHB.unit: Basic Unit Level Model using Hierarchical Bayesian Approach (Version 0.1.0)	2023
scDECO: Estimating Dynamic Correlation (Version 0.1.0)	2024
sims: Simulate Data from R or 'JAGS' Code (Version 0.0.4)	2021
snSMART: Small N Sequential Multiple Assignment Randomized Trial Methods (Version 0.2.4)	2022
tidybayes: Tidy Data and 'Geoms' for Bayesian Models (Version 3.0.7)	2018
unmconf: Modeling with Unmeasured Confounding (Version 1.0.0)	2023
vICC: Varying Intraclass Correlation Coefficients (Version 1.0.0)	2020
voi: Expected Value of Information (Version 1.0.3)	2023
wiqid: Quick and Dirty Estimates for Wildlife Populations (Version 0.3.3)	2016
zoib: Bayesian Inference for Beta Regression and Zero-or-One Inflated Beta Regression (Version 1.6)	2014

RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN). Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.