R Package Scholar
28,796

nlme: Linear and Nonlinear Mixed Effects Models

José Pinheiro  Douglas Bates  Saikat DebRoy  Deepayan Sarkar  EISPACK authors  Siem Heisterkamp  Bert Van Willigen  Johannes Ranke  R Core Team   View description and downloadsView dependenciesGitHub project

1999 Published
3.1-166 Version
0 Citations
9 Authors
Referenced by ⇅ Year
AdaptFitOS: Adaptive Semiparametric Additive Regression with Simultaneous Confidence Bands and Specification Tests (Version 0.69)

2012
BartMixVs: Variable Selection Using Bayesian Additive Regression Trees (Version 1.0.0)

2022
clusterPower: Power Calculations for Cluster-Randomized and Cluster-Randomized Crossover Trials (Version 0.7.0)

2011
nlshelper: Convenient Functions for Non-Linear Regression (Version 0.2)

2017
spatstat.core: Core Functionality of the "spatstat" Family (Version 2.4-4)

2021
ZIBseq: Differential Abundance Analysis for Metagenomic Data via Zero-Inflated Beta Regression (Version 1.2)

2017
StructFDR: False Discovery Control Procedure Integrating the Prior Structure Information (Version 1.4)

2016
merlin: Mixed Effects Regression for Linear, Non-Linear and User-Defined Models (Version 0.1.0)

2018
soilassessment: Assessment Models for Agriculture Soil Conditions and Crop Suitability (Version 0.2.6)

2019
boxcoxmix: Box-Cox-Type Transformations for Linear and Logistic Models with Random Effects (Version 0.46)

2017
breathtestcore: Core Functions to Read and Fit 13c Time Series from Breath Tests (Version 0.8.8)

2017
brms: Bayesian Regression Models using 'Stan' (Version 2.22.0)

2015
broom.mixed: Tidying Methods for Mixed Models (Version 0.2.9.6)

2018
bsitar: Bayesian Super Imposition by Translation and Rotation Growth Curve Analysis (Version 0.2.1)

2023
buildmer: Stepwise Elimination and Term Reordering for Mixed-Effects Regression (Version 2.11)

2019
cAIC4: Conditional Akaike Information Criterion for 'lme4' and 'nlme' (Version 1.0)

2014
nlMS: Non-Linear Model Selection (Version 1.1)

2019
nlmeU: Datasets and Utility Functions Enhancing Functionality of 'nlme' Package (Version 0.70-9)

2013
nlmixr2est: Nonlinear Mixed Effects Models in Population PK/PD, Estimation Routines (Version 3.0.2)

2022
nlmixr2extra: Nonlinear Mixed Effects Models in Population PK/PD, Extra Support Functions (Version 3.0.1)

2022
nlmm: Generalized Laplace Mixed-Effects Models (Version 1.1.0)

2020
nlraa: Nonlinear Regression for Agricultural Applications (Version 1.9.7)

2020
nlsem: Fitting Structural Equation Mixture Models (Version 0.8-1)

2014
nonmem2rx: Converts 'NONMEM' Models to 'rxode2' (Version 0.1.6)

2023
npmlreg: Nonparametric Maximum Likelihood Estimation for Random Effect Models (Version 0.46-5)

2006
ADDT: Analysis of Accelerated Destructive Degradation Test Data (Version 2.0)

2014
AER: Applied Econometrics with R (Version 1.2-14)

2008
AFR: Toolkit for Regression Analysis of Kazakhstan Banking Sector Data (Version 0.3.6)

2022
AICcmodavg: Model Selection and Multimodel Inference Based on (Q)AIC(c) (Version 2.3-3)

2009
ANOM: Analysis of Means (Version 0.5)

2015
BART: Bayesian Additive Regression Trees (Version 2.9.9)

2017
BElikelihood: Likelihood Method for Evaluating Bioequivalence (Version 1.1)

2024
BIOdry: Multilevel Modeling of Dendroclimatical Fluctuations (Version 0.9)

2015
BayesLCA: Bayesian Latent Class Analysis (Version 1.9)

2012
BoostMLR: Boosting for Multivariate Longitudinal Responses (Version 1.0.3)

2020
CALANGO: Comparative Analysis with Annotation-Based Genomic Components (Version 1.0.20)

2021
CIMPLE: Analysis of Longitudinal Electronic Health Record (EHR) Data with Possibly Informative Observational Time (Version 0.1.0)

2024
CKLRT: Composite Kernel Machine Regression Based on Likelihood Ratio Test (Version 0.2.3)

2018
CLME: Constrained Inference for Linear Mixed Effects Models (Version 2.0-12)

2014
CR2: Compute Cluster Robust Standard Errors with Degrees of Freedom Adjustments (Version 0.2.1)

2022
CUFF: Charles's Utility Function using Formula (Version 1.9)

2016
ClusROC: ROC Analysis in Three-Class Classification Problems for Clustered Data (Version 1.0.2)

2022
CorrMixed: Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models (Version 1.1)

2015
CovCombR: Combine Partial Covariance / Relationship Matrices (Version 1.0)

2020
CpGassoc: Association Between Methylation and a Phenotype of Interest (Version 2.70)

2012
Crossover: Analysis and Search of Crossover Designs (Version 0.1-22)

2014
DImodelsMulti: Fit Multivariate Diversity-Interactions Models with Repeated Measures (Version 1.1.1)

2024
DendroSync: A Set of Tools for Calculating Spatial Synchrony Between Tree-Ring Chronologies (Version 0.1.4)

2017
DescrTab2: Publication Quality Descriptive Statistics Tables (Version 2.1.16)

2020
DoseFinding: Planning and Analyzing Dose Finding Experiments (Version 1.2-1)

2010
Epi: Statistical Analysis in Epidemiology (Version 2.58)

2005
FIESTAutils: Utility Functions for Forest Inventory Estimation and Analysis (Version 1.2.3)

2022
FLightR: Reconstruct Animal Paths from Solar Geolocation Loggers Data (Version 0.5.5)

2016
FMAT: The Fill-Mask Association Test (Version 2024.7)

2023
FRESA.CAD: Feature Selection Algorithms for Computer Aided Diagnosis (Version 3.4.8)

2014
FSA: Simple Fisheries Stock Assessment Methods (Version 0.9.5)

2015
FastJM: Semi-Parametric Joint Modeling of Longitudinal and Survival Data (Version 1.4.2)

2022
FlexParamCurve: Tools to Fit Flexible Parametric Curves (Version 1.5-6)

2011
ForeCA: Forecastable Component Analysis (Version 0.2.7)

2012
GEVACO: Joint Test of Gene and GxE Interactions via Varying Coefficients (Version 1.0.1)

2020
GLMMadaptive: Generalized Linear Mixed Models using Adaptive Gaussian Quadrature (Version 0.9-1)

2018
GeNetIt: Spatial Graph-Theoretic Genetic Gravity Modelling (Version 0.1-6)

2016
Greg: Regression Helper Functions (Version 2.0.2)

2016
HLMdiag: Diagnostic Tools for Hierarchical (Multilevel) Linear Models (Version 0.5.0)

2011
HQM: Superefficient Estimation of Future Conditional Hazards Based on Marker Information (Version 0.1.4)

2022
HydroMe: Estimating Water Retention and Infiltration Model Parameters using Experimental Data (Version 2.1.1)

2012
INLAjoint: Multivariate Joint Modeling for Longitudinal and Time-to-Event Outcomes with 'INLA' (Version 24.3.25)

2023
ImFoR: Non-Linear Height Diameter Models for Forestry (Version 0.1.0)

2023
IntegratedJM: Joint Modeling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature (Version 1.6)

2015
IrregLong: Analysis of Longitudinal Data with Irregular Observation Times (Version 0.4.0)

2019
JM: Joint Modeling of Longitudinal and Survival Data (Version 1.5-2)

2008
JMH: Joint Model of Heterogeneous Repeated Measures and Survival Data (Version 1.0.3)

2023
JMbayes: Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach (Version 0.8-85)

2012
JMbayes2: Extended Joint Models for Longitudinal and Time-to-Event Data (Version 0.5-0)

2021
JNplots: Visualize Outputs from the 'Johnson-Neyman' Technique (Version 0.1.1)

2023
JSM: Semiparametric Joint Modeling of Survival and Longitudinal Data (Version 1.0.1)

2016
JoSAE: Unit-Level and Area-Level Small Area Estimation (Version 0.3.0)

2011
KenSyn: Knowledge Synthesis in Agriculture - From Experimental Network to Meta-Analysis (Version 0.3)

2017
LMMELSM: Fit Latent Multivariate Mixed Effects Location Scale Models (Version 0.2.0)

2021
LMMstar: Repeated Measurement Models for Discrete Times (Version 1.1.0)

2021
LPower: Calculates Power, Sample Size, or Detectable Effect for Longitudinal Analyses (Version 0.1.1)

2018
Landmarking: Analysis using Landmark Models (Version 1.0.0)

2022
LinRegInteractive: Interactive Interpretation of Linear Regression Models (Version 0.3-3)

2014
LoBrA: Generalized Spline Mixed Effect Models for Longitudinal Breath Data (Version 1.0)

2022
LongCART: Recursive Partitioning for Longitudinal Data and Right Censored Data Using Baseline Covariates (Version 3.2)

2019
LoopAnalyst: A Collection of Tools to Conduct Levins' Loop Analysis (Version 1.2-7)

2006
MARSS: Multivariate Autoregressive State-Space Modeling (Version 3.11.9)

2010
MASS: Support Functions and Datasets for Venables and Ripley's MASS (Version 7.3-61)

2009
MBESS: The MBESS R Package (Version 4.9.3)

2006
MECfda: Scalar-on-Function Regression with Measurement Error Correction (Version 0.1.0)

2024
MIRES: Measurement Invariance Assessment Using Random Effects Models and Shrinkage (Version 0.1.0)

2021
MKinfer: Inferential Statistics (Version 1.2)

2019
MLID: Multilevel Index of Dissimilarity (Version 1.0.1)

2017
MLMusingR: Practical Multilevel Modeling (Version 0.3.2)

2022
MSwM: Fitting Markov Switching Models (Version 1.5)

2013
MVA: An Introduction to Applied Multivariate Analysis with R (Version 1.0-8)

2011
MethComp: Analysis of Agreement in Method Comparison Studies (Version 1.30.2)

2011
MplusTrees: Decision Trees with Structural Equation Models Fit in 'Mplus' (Version 0.2.2)

2019
MuMIn: Multi-Model Inference (Version 1.48.4)

2010
NADA2: Data Analysis for Censored Environmental Data (Version 1.1.8)

2021
NBR: Network-Based R-Statistics using Mixed Effects Models (Version 0.1.5)

2020
NSAE: Nonstationary Small Area Estimation (Version 0.4.0)

2021
OPDOE: Optimal Design of Experiments (Version 1.0-10)

2013
PCPS: Principal Coordinates of Phylogenetic Structure (Version 1.0.7)

2014
PDXpower: Time to Event Outcome in Experimental Designs of Pre-Clinical Studies (Version 1.0.3)

2024
PKNCA: Perform Pharmacokinetic Non-Compartmental Analysis (Version 0.11.0)

2015
PopED: Population (and Individual) Optimal Experimental Design (Version 0.7.0)

2014
ProfileLikelihood: Profile Likelihood for a Parameter in Commonly Used Statistical Models (Version 1.3)

2011
Publish: Format Output of Various Routines in a Suitable Way for Reports and Publication (Version 2023.01.17)

2017
R2HTML: HTML Exportation for R Objects (Version 2.3.4)

2001
REEMtree: Regression Trees with Random Effects for Longitudinal (Panel) Data (Version 0.90.5)

2009
RESI: Robust Effect Size Index (RESI) Estimation (Version 1.2.4)

2022
RISCA: Causal Inference and Prediction in Cohort-Based Analyses (Version 1.0.5)

2019
RLRsim: Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive Models (Version 3.1-8)

2007
RMark: R Code for Mark Analysis (Version 3.0.0)

2011
RPPASPACE: Reverse-Phase Protein Array Super Position and Concentration Evaluation (Version 1.0.10)

2020
RRphylo: Phylogenetic Ridge Regression Methods for Comparative Studies (Version 2.8.1)

2018
Rcmdr: R Commander (Version 2.9-5)

2003
RepeatedHighDim: Methods for High-Dimensional Repeated Measures Data (Version 2.3.0)

2011
SAMGEP: A Semi-Supervised Method for Prediction of Phenotype Event Times (Version 0.1.0-1)

2021
SIMPLE.REGRESSION: OLS, Moderated, Logistic, and Count Regressions Made Simple (Version 0.1.9)

2021
SMPracticals: Practicals for Use with Davison (2003) Statistical Models (Version 1.4-3.1)

2006
SPCDAnalyze: Design and Analyze Studies using the Sequential Parallel Comparison Design (Version 0.1.0)

2019
SPREDA: Statistical Package for Reliability Data Analysis (Version 1.1)

2014
SSLR: Semi-Supervised Classification, Regression and Clustering Methods (Version 0.9.3.3)

2020
STMr: Strength Training Manual R-Language Functions (Version 0.1.6)

2022
SemiPar: Semiparametic Regression (Version 1.0-4.2)

2005
SimplyAgree: Flexible and Robust Agreement and Reliability Analyses (Version 0.2.0)

2021
SmoothWin: Soft Windowing on Linear Regression (Version 3.0.0)

2017
SpatialVS: Spatial Variable Selection (Version 1.1)

2018
StroupGLMM: R Codes and Datasets for Generalized Linear Mixed Models: Modern Concepts, Methods and Applications by Walter W. Stroup (Version 0.3.0)

2016
Surrogate: Evaluation of Surrogate Endpoints in Clinical Trials (Version 3.3.0)

2014
SurvDisc: Discrete Time Survival and Longitudinal Data Analysis (Version 0.1.1)

2016
TTAinterfaceTrendAnalysis: Temporal Trend Analysis Graphical Interface (Version 1.5.10)

2012
TapeR: Flexible Tree Taper Curves Based on Semiparametric Mixed Models (Version 0.5.3)

2013
TempCont: Temporal Contributions on Trends using Mixed Models (Version 0.1.0)

2019
VetResearchLMM: Linear Mixed Models - An Introduction with Applications in Veterinary Research (Version 1.0.0)

2016
ZIBR: A Zero-Inflated Beta Random Effect Model (Version 1.0.2)

2023
abd: The Analysis of Biological Data (Version 0.2-8)

2011
actuaRE: Handling Hierarchically Structured Risk Factors using Random Effects Models (Version 0.1.5)

2023
adventr: Interactive R Tutorials to Accompany Field (2016), "An Adventure in Statistics" (Version 0.1.8)

2020
afex: Analysis of Factorial Experiments (Version 1.4-1)

2012
agriTutorial: Tutorial Analysis of Some Agricultural Experiments (Version 0.1.5)

2018
agricolae: Statistical Procedures for Agricultural Research (Version 1.3-7)

2006
agridat: Agricultural Datasets (Version 1.24)

2011
alphastable: Inference for Stable Distribution (Version 0.2.1)

2018
animint2: Animated Interactive Grammar of Graphics (Version 2024.11.2)

2019
ape: Analyses of Phylogenetics and Evolution (Version 5.8)

2002
arm: Data Analysis Using Regression and Multilevel/Hierarchical Models (Version 1.14-4)

2007
assist: A Suite of R Functions Implementing Spline Smoothing Techniques (Version 3.1.9)

2004
baytrends: Long Term Water Quality Trend Analysis (Version 2.0.12)

2018
bcmixed: Mixed Effect Model with the Box-Cox Transformation (Version 0.1.4)

2020
bdots: Bootstrapped Differences of Time Series (Version 1.2.5)

2015
biometryassist: Functions to Assist Design and Analysis of Agronomic Experiments (Version 1.2.1)

2022
bkmr: Bayesian Kernel Machine Regression (Version 0.2.2)

2016
boostmtree: Boosted Multivariate Trees for Longitudinal Data (Version 1.5.1)

2016
car: Companion to Applied Regression (Version 3.1-3)

2001
caret: Classification and Regression Training (Version 7.0-1)

2007
cati: Community Assembly by Traits: Individuals and Beyond (Version 0.99.4)

2014
catregs: Post-Estimation Functions for Generalized Linear Mixed Models (Version 1.2.2)

2024
cccrm: Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures (Version 3.0.3)

2011
cem: Coarsened Exact Matching (Version 1.1.31)

2008
cg: Compare Groups, Analytically and Graphically (Version 1.0-3)

2010
circacompare: Analyses of Circadian Data (Version 0.2.0)

2021
climwin: Climate Window Analysis (Version 1.2.3)

2015
clintools: Tools for Clinical Research (Version 0.9.10.1)

2021
clubSandwich: Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections (Version 0.5.11)

2016
collin: Visualization the Effects of Collinearity in Distributed Lag Models and Other Linear Models (Version 0.0.4)

2021
combat.enigma: Fit and Apply ComBat, LMM, or Prescaling Harmonization for ENIGMA and Other Multisite MRI Data (Version 1.1.1)

2023
contrast: A Collection of Contrast Methods (Version 0.24.2)

2007
cope: Coverage Probability Excursion (CoPE) Sets (Version 0.2.3)

2015
covBM: Brownian Motion Processes for 'nlme'-Models (Version 0.1.0)

2015
coxme: Mixed Effects Cox Models (Version 2.2-22)

2009
cplm: Compound Poisson Linear Models (Version 0.7-12.1)

2011
ctpm: Continuous-Time Phylogenetic Modeling (Version 1.0.1)

2021
cv: Cross-Validating Regression Models (Version 2.0.3)

2023
densEstBayes: Density Estimation via Bayesian Inference Engines (Version 1.0-2.2)

2020
depmixS4: Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4 (Version 1.5-0)

2008
directlabels: Direct Labels for Multicolor Plots (Version 2024.1.21)

2010
distdichoR: Distributional Method for the Dichotomisation of Continuous Outcomes (Version 0.1-1)

2018
dlnm: Distributed Lag Non-Linear Models (Version 2.4.7)

2009
drugDemand: Drug Demand Forecasting (Version 0.1.3)

2023
dsm: Density Surface Modelling of Distance Sampling Data (Version 2.3.3)

2012
eBsc: "Empirical Bayes Smoothing Splines with Correlated Errors" (Version 4.17)

2020
easyanova: Analysis of Variance and Other Important Complementary Analyses (Version 11.0)

2012
easyreg: Easy Regression (Version 4.0)

2016
eba: Elimination-by-Aspects Models (Version 1.10-0)

2004
ecostats: Code and Data Accompanying the Eco-Stats Text (Warton 2022) (Version 1.2.1)

2020
effects: Effect Displays for Linear, Generalized Linear, and Other Models (Version 4.2-2)

2003
emdi: Estimating and Mapping Disaggregated Indicators (Version 2.2.2)

2016
emmeans: Estimated Marginal Means, aka Least-Squares Means (Version 1.10.6)

2017
epigrowthfit: Nonlinear Mixed Effects Models of Epidemic Growth (Version 0.15.3)

2024
epimdr: Functions and Data for "Epidemics: Models and Data in R" (Version 0.6-5)

2018
epimdr2: Functions and Data for "Epidemics: Models and Data in R (2nd Edition)" (Version 1.0-9)

2022
fPASS: Power and Sample Size for Projection Test under Repeated Measures (Version 1.0.0)

2023
far: Modelization for Functional AutoRegressive Processes (Version 0.6-7)

2005
faraway: Functions and Datasets for Books by Julian Faraway (Version 1.0.8)

2004
fda.usc: Functional Data Analysis and Utilities for Statistical Computing (Version 2.2.0)

2011
fitplc: Fit Hydraulic Vulnerability Curves (Version 1.2-3)

2016
fixest: Fast Fixed-Effects Estimations (Version 0.12.1)

2019
flextable: Functions for Tabular Reporting (Version 0.9.7)

2017
fmri: Analysis of fMRI Experiments (Version 1.9.12.1)

2006
forestat: Forest Carbon Sequestration and Potential Productivity Calculation (Version 1.1.0)

2023
forsearch: Diagnostic Analysis Using Forward Search Procedure for Various Models (Version 6.3.0)

2022
frailtypack: Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints (Version 3.6.5)

2005
funpca: Functional Principal Component Analysis (Version 9.0)

2023
gJLS2: A Generalized Joint Location and Scale Framework for Association Testing (Version 0.2.0)

2021
galamm: Generalized Additive Latent and Mixed Models (Version 0.2.1)

2023
gamair: Data for 'GAMs: An Introduction with R' (Version 1.0-2)

2005
gamlss: Generalized Additive Models for Location Scale and Shape (Version 5.4-22)

2012
gap: Genetic Analysis Package (Version 1.6)

2004
gastempt: Analyzing Gastric Emptying from MRI or Scintigraphy (Version 0.6.2)

2017
gcmr: Gaussian Copula Marginal Regression (Version 1.0.3)

2011
geesmv: Modified Variance Estimators for Generalized Estimating Equations (Version 1.3)

2014
geoSAE: Geoadditive Small Area Model (Version 0.1.0)

2021
georob: Robust Geostatistical Analysis of Spatial Data (Version 0.3-20)

2013
ggResidpanel: Panels and Interactive Versions of Diagnostic Plots using 'ggplot2' (Version 0.3.0)

2019
ggeffects: Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs (Version 2.0.0)

2017
ggfortify: Data Visualization Tools for Statistical Analysis Results (Version 0.4.17)

2015
gglm: Grammar of Graphics for Linear Model Diagnostic Plots (Version 1.0.3)

2020
ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics (Version 3.5.1)

2007
ggpmisc: Miscellaneous Extensions to 'ggplot2' (Version 0.6.1)

2016
ggragged: Ragged Grids for 'ggplot2' (Version 0.2.0)

2023
glme: Generalized Linear Mixed Effects Models (Version 0.1.0)

2021
glmglrt: GLRT P-Values in Generalized Linear Models (Version 0.2.2)

2020
glmmTMB: Generalized Linear Mixed Models using Template Model Builder (Version 1.1.10)

2017
glmmfields: Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling (Version 0.1.8)

2018
gma: Granger Mediation Analysis (Version 1.0)

2017
gmodels: Various R Programming Tools for Model Fitting (Version 2.19.1)

2005
goric: Generalized Order-Restricted Information Criterion (Version 1.1-2)

2011
gplots: Various R Programming Tools for Plotting Data (Version 3.2.0)

2005
gratia: Graceful 'ggplot'-Based Graphics and Other Functions for GAMs Fitted Using 'mgcv' (Version 0.9.2)

2019
gremlin: Mixed-Effects REML Incorporating Generalized Inverses (Version 1.1.0)

2018
growthPheno: Functional Analysis of Phenotypic Growth Data to Smooth and Extract Traits (Version 2.1.25)

2019
hamlet: Hierarchical Optimal Matching and Machine Learning Toolbox (Version 0.9.6)

2014
heplots: Visualizing Hypothesis Tests in Multivariate Linear Models (Version 1.7.1)

2007
huxtable: Easily Create and Style Tables for LaTeX, HTML and Other Formats (Version 5.5.7)

2017
insight: Easy Access to Model Information for Various Model Objects (Version 1.0.0)

2019
investr: Inverse Estimation/Calibration Functions (Version 1.4.2)

2013
ipsecr: Spatially Explicit Capture-Recapture by Inverse Prediction (Version 1.4.1)

2022
ipw: Estimate Inverse Probability Weights (Version 1.2.1)

2010
isni: Index of Local Sensitivity to Nonignorability (Version 1.3)

2018
jmBIG: Joint Longitudinal and Survival Model for Big Data (Version 0.1.2)

2023
joineR: Joint Modelling of Repeated Measurements and Time-to-Event Data (Version 1.2.8)

2012
joineRML: Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes (Version 0.4.6)

2016
kyotil: Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies (Version 2024.11-01)

2013
lava: Latent Variable Models (Version 1.8.0)

2012
lavaSearch2: Tools for Model Specification in the Latent Variable Framework (Version 2.0.3)

2018
lcc: Longitudinal Concordance Correlation (Version 1.1.4)

2018
lcmm: Extended Mixed Models Using Latent Classes and Latent Processes (Version 2.1.0)

2010
likelihood: Methods for Maximum Likelihood Estimation (Version 1.9)

2012
lme4: Linear Mixed-Effects Models using 'Eigen' and S4 (Version 1.1-35.5)

2003
lmeInfo: Information Matrices for 'lmeStruct' and 'glsStruct' Objects (Version 0.3.2)

2020
lmeSplines: Add Smoothing Spline Modelling Capability to 'nlme' (Version 1.1-12)

2003
lmeresampler: Bootstrap Methods for Nested Linear Mixed-Effects Models (Version 0.2.4)

2016
lmfor: Functions for Forest Biometrics (Version 1.6)

2015
longRPart2: Recursive Partitioning of Longitudinal Data (Version 0.2.3)

2017
longpower: Sample Size Calculations for Longitudinal Data (Version 1.0.27)

2010
lqmm: Linear Quantile Mixed Models (Version 1.5.8)

2012
lucid: Printing Floating Point Numbers in a Human-Friendly Format (Version 1.8)

2014
maSAE: Mandallaz' Model-Assisted Small Area Estimators (Version 2.0.3)

2014
macc: Mediation Analysis of Causality under Confounding (Version 1.0.1)

2016
marginaleffects: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis Tests (Version 0.24.0)

2021
mbbe: Model Based Bio-Equivalence (Version 0.1.0)

2024
mbest: Moment-Based Estimation for Hierarchical Models (Version 0.6)

2014
mdpeer: Graph-Constrained Regression with Enhanced Regularization Parameters Selection (Version 1.0.1)

2016
meboot: Maximum Entropy Bootstrap for Time Series (Version 1.4-9.4)

2007
merTools: Tools for Analyzing Mixed Effect Regression Models (Version 0.6.2)

2015
metafor: Meta-Analysis Package for R (Version 4.6-0)

2009
metaplot: Data-Driven Plot Design (Version 0.8.4)

2017
mgcv: Mixed GAM Computation Vehicle with Automatic Smoothness Estimation (Version 1.9-1)

2000
micemd: Multiple Imputation by Chained Equations with Multilevel Data (Version 1.10.0)

2017
misty: Miscellaneous Functions 'T. Yanagida' (Version 0.6.8)

2020
mitml: Tools for Multiple Imputation in Multilevel Modeling (Version 0.4-5)

2015
mixmeta: An Extended Mixed-Effects Framework for Meta-Analysis (Version 1.2.0)

2019
mkin: Kinetic Evaluation of Chemical Degradation Data (Version 1.2.6)

2010
mlmi: Maximum Likelihood Multiple Imputation (Version 1.1.2)

2019
mmrm: Mixed Models for Repeated Measures (Version 0.3.14)

2022
mnreadR: MNREAD Parameters Estimation and Curve Plotting (Version 2.1.7)

2017
modelsummary: Summary Tables and Plots for Statistical Models and Data: Beautiful, Customizable, and Publication-Ready (Version 2.2.0)

2019
modsem: Latent Interaction (and Moderation) Analysis in Structural Equation Models (SEM) (Version 1.0.4)

2024
mppR: Multi-Parent Population QTL Analysis (Version 1.5.0)

2018
mratios: Ratios of Coefficients in the General Linear Model (Version 1.4.2)

2006
multcomp: Simultaneous Inference in General Parametric Models (Version 1.4-26)

2002
multifear: Multiverse Analyses for Conditioning Data (Version 0.1.3)

2021
multilevel: Multilevel Functions (Version 2.7)

2006
multilevelTools: Multilevel and Mixed Effects Model Diagnostics and Effect Sizes (Version 0.1.1)

2020
multilevelmediation: Utility Functions for Multilevel Mediation Analysis (Version 0.3.1)

2024
multilevelmod: Model Wrappers for Multi-Level Models (Version 1.0.0)

2022
mvctm: Multivariate Variance Components Tests for Multilevel Data (Version 1.2)

2014
mvmeta: Multivariate and Univariate Meta-Analysis and Meta-Regression (Version 1.0.3)

2011
mvvg: Matrix-Variate Variance-Gamma Distribution (Version 0.1.0)

2024
openCR: Open Population Capture-Recapture (Version 2.2.7)

2018
ordinal: Regression Models for Ordinal Data (Version 2023.12-4.1)

2010
pander: An R 'Pandoc' Writer (Version 0.6.5)

2012
panelr: Regression Models and Utilities for Repeated Measures and Panel Data (Version 0.7.8)

2019
papaja: Prepare American Psychological Association Journal Articles with R Markdown (Version 0.1.3)

2022
papeR: A Toolbox for Writing Pretty Papers and Reports (Version 1.0-5)

2013
parameters: Processing of Model Parameters (Version 0.24.0)

2019
paramtest: Run a Function Iteratively While Varying Parameters (Version 0.1.0)

2017
parsnip: A Common API to Modeling and Analysis Functions (Version 1.2.1)

2018
pcvr: Plant Phenotyping and Bayesian Statistics (Version 1.1.1.0)

2024
pencal: Penalized Regression Calibration (PRC) for the Dynamic Prediction of Survival (Version 2.2.2)

2020
performance: Assessment of Regression Models Performance (Version 0.12.4)

2019
petersenlab: A Collection of R Functions by the Petersen Lab (Version 1.0.0)

2024
pgirmess: Spatial Analysis and Data Mining for Field Ecologists (Version 2.0.3)

2005
pheno: Auxiliary Functions for Phenological Data Analysis (Version 1.7-0)

2003
phia: Post-Hoc Interaction Analysis (Version 0.3-1)

2012
photosynthesis: Tools for Plant Ecophysiology & Modeling (Version 2.1.5)

2019
phylolm: Phylogenetic Linear Regression (Version 2.6.5)

2013
phytools: Phylogenetic Tools for Comparative Biology (and Other Things) (Version 2.3-0)

2011
picante: Integrating Phylogenies and Ecology (Version 1.8.2)

2008
piecewiseSEM: Piecewise Structural Equation Modeling (Version 2.3.0.1)

2015
plm: Linear Models for Panel Data (Version 2.6-4)

2006
plotluck: 'ggplot2' Version of "I'm Feeling Lucky!" (Version 1.1.1)

2016
polyqtlR: QTL Analysis in Autopolyploid Bi-Parental F1 Populations (Version 0.1.1)

2020
portfolio: Analysing Equity Portfolios (Version 0.5-3)

2005
postHoc: Tools for Post-Hoc Analysis (Version 0.1.3)

2020
povmap: Extension to the 'emdi' Package (Version 1.0.1)

2023
powerEQTL: Power and Sample Size Calculation for Bulk Tissue and Single-Cell eQTL Analysis (Version 0.3.4)

2017
prediction: Tidy, Type-Safe 'prediction()' Methods (Version 0.3.18)

2016
predictmeans: Predicted Means for Linear and Semiparametric Models (Version 1.1.1)

2014
primer: Functions and Data for the Book, a Primer of Ecology with R (Version 1.2.0)

2009
projpred: Projection Predictive Feature Selection (Version 2.8.0)

2018
psych: Procedures for Psychological, Psychometric, and Personality Research (Version 2.4.6.26)

2007
psycModel: Integrated Toolkit for Psychological Analysis and Modeling in R (Version 0.5.0)

2021
psychometric: Applied Psychometric Theory (Version 2.4)

2006
psyphy: Functions for Analyzing Psychophysical Data in R (Version 0.3)

2007
pubh: A Toolbox for Public Health and Epidemiology (Version 2.0.0)

2018
pwr2ppl: Power Analyses for Common Designs (Power to the People) (Version 0.5.0)

2019
qfa: Quantile-Frequency Analysis (QFA) of Time Series (Version 2.1)

2013
qtlpoly: Random-Effect Multiple QTL Mapping in Autopolyploids (Version 0.2.4)

2021
quest: Prepare Questionnaire Data for Analysis (Version 0.2.0)

2021
r2glmm: Computes R Squared for Mixed (Multilevel) Models (Version 0.1.2)

2016
r2mlm: R-Squared Measures for Multilevel Models (Version 0.3.7)

2020
ramps: Bayesian Geostatistical Modeling with RAMPS (Version 0.6.18)

2007
rangeMapper: A Platform for the Study of Macro-Ecology of Life History Traits (Version 2.0.3)

2010
raw: R Actuarial Workshops (Version 0.1.8)

2016
rbmi: Reference Based Multiple Imputation (Version 1.3.1)

2022
refund: Regression with Functional Data (Version 0.1-37)

2010
reghelper: Helper Functions for Regression Analysis (Version 1.1.2)

2017
regress: Gaussian Linear Models with Linear Covariance Structure (Version 1.3-21)

2004
replicateBE: Average Bioequivalence with Expanding Limits (ABEL) (Version 1.1.3)

2019
reportReg: An Easy Way to Report Regression Analysis (Version 0.3.0)

2017
resde: Estimation in Reducible Stochastic Differential Equations (Version 1.1)

2023
rlme: Rank-Based Estimation and Prediction in Random Effects Nested Models (Version 0.5)

2013
rms: Regression Modeling Strategies (Version 6.9-0)

2009
robustlmm: Robust Linear Mixed Effects Models (Version 3.3-1)

2013
robustvarComp: Robust Estimation of Variance Component Models (Version 0.1-7)

2014
rpql: Regularized PQL for Joint Selection in GLMMs (Version 0.8.1)

2016
rr2: R2s for Regression Models (Version 1.1.1)

2018
rsq: R-Squared and Related Measures (Version 2.7)

2016
rstanarm: Bayesian Applied Regression Modeling via Stan (Version 2.32.1)

2016
rties: Modeling Interpersonal Dynamics (Version 5.0.0)

2020
rxode2: Facilities for Simulating from ODE-Based Models (Version 3.0.2)

2022
saeTrafo: Transformations for Unit-Level Small Area Models (Version 1.0.4)

2022
scam: Shape Constrained Additive Models (Version 1.2-17)

2012
scan: Single-Case Data Analyses for Single and Multiple Baseline Designs (Version 0.61.0)

2016
scdhlm: Estimating Hierarchical Linear Models for Single-Case Designs (Version 0.7.3)

2016
scdtb: Single Case Design Tools (Version 0.2.0)

2024
scicomptools: Tools Developed by the NCEAS Scientific Computing Support Team (Version 1.1.0)

2023
sdmTMB: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB' (Version 0.6.0)

2023
secr: Spatially Explicit Capture-Recapture (Version 5.1.0)

2010
segmented: Regression Models with Break-Points / Change-Points Estimation (with Possibly Random Effects) (Version 2.1-3)

2003
sephora: Statistical Estimation of Phenological Parameters (Version 0.1.31)

2024
sfsmisc: Utilities from 'Seminar fuer Statistik' ETH Zurich (Version 1.1-20)

2004
shinyMixR: Interactive 'shiny' Dashboard for 'nlmixr2' (Version 0.5.0)

2024
shinyTempSignal: Explore Temporal and Other Phylogenetic Signals (Version 0.0.8)

2022
simex: SIMEX- And MCSIMEX-Algorithm for Measurement Error Models (Version 1.8)

2005
simglm: Simulate Models Based on the Generalized Linear Model (Version 0.8.9)

2017
sitar: Super Imposition by Translation and Rotation Growth Curve Analysis (Version 1.4.0)

2014
skewlmm: Scale Mixture of Skew-Normal Linear Mixed Models (Version 1.1.2)

2020
spaMM: Mixed-Effect Models, with or without Spatial Random Effects (Version 4.5.0)

2013
spatialreg: Spatial Regression Analysis (Version 1.3-6)

2019
spatstat.explore: Exploratory Data Analysis for the 'spatstat' Family (Version 3.3-3)

2022
spatstat.model: Parametric Statistical Modelling and Inference for the 'spatstat' Family (Version 3.3-3)

2022
sphet: Estimation of Spatial Autoregressive Models with and without Heteroskedastic Innovations (Version 2.1-1)

2010
splinetree: Longitudinal Regression Trees and Forests (Version 0.2.0)

2018
splm: Econometric Models for Spatial Panel Data (Version 1.6-5)

2012
spm2: Spatial Predictive Modeling (Version 1.1.3)

2021
stargazer: Well-Formatted Regression and Summary Statistics Tables (Version 5.2.3)

2012
statforbiology: Tools for Data Analyses in Biology (Version 0.9.9)

2024
surveillance: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena (Version 1.24.1)

2005
swag: Sparse Wrapper Algorithm (Version 0.1.0)

2020
tableone: Create 'Table 1' to Describe Baseline Characteristics with or without Propensity Score Weights (Version 0.13.2)

2014
tergm: Fit, Simulate and Diagnose Models for Network Evolution Based on Exponential-Family Random Graph Models (Version 4.2.1)

2013
tern.gee: Tables and Graphs for Generalized Estimating Equations (GEE) Model Fits (Version 0.1.5)

2023
texPreview: Compile and Preview Snippets of 'LaTeX' (Version 2.1.0)

2017
texreg: Conversion of R Regression Output to LaTeX or HTML Tables (Version 1.39.4)

2012
tidyUSDA: A Minimal Tool Set for Gathering USDA Quick Stat Data for Analysis and Visualization (Version 0.4.1)

2019
tidystats: Save Output of Statistical Tests (Version 0.6.2)

2017
tinycodet: Functions to Help in your Coding Etiquette (Version 0.5.3)

2023
tipsae: Tools for Handling Indices and Proportions in Small Area Estimation (Version 1.0.3)

2022
tramME: Transformation Models with Mixed Effects (Version 1.0.7)

2020
trouBBlme4SolveR: Troubles Solver for 'lme4' (Version 0.1.2)

2022
tukeytrend: Tukeys Trend Test via Multiple Marginal Models (Version 0.7)

2017
umx: Structural Equation Modeling and Twin Modeling in R (Version 4.21.0)

2015
urca: Unit Root and Cointegration Tests for Time Series Data (Version 1.3-4)

2004
vICC: Varying Intraclass Correlation Coefficients (Version 1.0.0)

2020
varTestnlme: Variance Components Testing for Linear and Nonlinear Mixed Effects Models (Version 1.3.5)

2020
vcrpart: Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models (Version 1.0-6)

2014
vici: Vaccine Induced Cellular Immunogenicity with Bivariate Modeling (Version 0.7.3)

2019
visreg: Visualization of Regression Models (Version 2.7.0)

2012
voluModel: Modeling Species Distributions in Three Dimensions (Version 0.2.2)

2022
vstdct: Nonparametric Estimation of Toeplitz Covariance Matrices (Version 0.2)

2023
warpMix: Mixed Effects Modeling with Warping for Functional Data Using B-Spline (Version 0.1.0)

2017

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