R Package Scholar
16,903

lme4: Linear Mixed-Effects Models using 'Eigen' and S4

douglas bates  fabian scheipl  peter green  alexander bauer  pavel krivitsky   View description and downloadsView dependenciesGitHub project

2003 Published
1.1-35.3 Version
0 Citations
5 Authors
Referenced by ⇅ Year
abn: Modelling Multivariate Data with Additive Bayesian Networks (Version 3.0.4)

2011
ANTs: Animal Network Toolkit Software (Version 0.0.16)

2021
biokNN: Bi-Objective k-Nearest Neighbors Imputation for Multilevel Data (Version 0.1.0)

2021
clusterPower: Power Calculations for Cluster-Randomized and Cluster-Randomized Crossover Trials (Version 0.7.0)

2011
cvam: Coarsened Variable Modeling (Version 0.9.3)

2021
equatiomatic: Transform Models into "LaTeX" Equations (Version 0.3.1)

2020
expp: Spatial Analysis of Extra-Pair Paternity (Version 1.2.5)

2013
JointModel: Semiparametric Joint Models for Longitudinal and Counting Processes (Version 1.0)

2016
margins: Marginal Effects for Model Objects (Version 0.3.26.1)

2017
MixMAP: Implements the MixMAP Algorithm (Version 1.3.4)

2012
mumm: Multiplicative Mixed Models using the Template Model Builder (Version 0.2.1)

2018
psr: Functions for Analyzing Performance Science Data (Version 0.1.0)

2021
rbenvo: Built Environment Objects (Version 1.0.5)

2020
rdddr: Companion Datasets and Functions for Blair, Coppock, and Humphreys (2022) "Research Design: Declare, Diagnose, Redesign" (Version 1.0.0)

2022
swissMrP: Multilevel Regression with Post-Stratification (MrP) for Switzerland (Version 0.62)

2018
truthiness: Illusory Truth Longitudinal Study (Version 1.2.5)

2021
multilevelcoda: Estimate Bayesian Multilevel Models for Compositional Data (Version 1.2.3)

2023
rdss: Companion Datasets and Functions for Research Design in the Social Sciences (Version 1.0.10)

2023
prediction: Tidy, Type-Safe 'prediction()' Methods (Version 0.3.17)

2016
ggResidpanel: Panels and Interactive Versions of Diagnostic Plots using 'ggplot2' (Version 0.3.0)

2019
ggeffects: Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs (Version 1.5.2)

2017
gglm: Grammar of Graphics for Linear Model Diagnostic Plots (Version 1.0.3)

2020
ggstatsplot: 'ggplot2' Based Plots with Statistical Details (Version 0.12.3)

2018
mlVAR: Multi-Level Vector Autoregression (Version 0.5.2)

2015
mlmRev: Examples from Multilevel Modelling Software Review (Version 1.0-8)

2005
mlma: Multilevel Mediation Analysis (Version 6.3-1)

2015
mlmhelpr: Multilevel/Mixed Model Helper Functions (Version 0.1.0)

2022
mlmpower: Power Analysis and Data Simulation for Multilevel Models (Version 1.0.8)

2023
mlmtools: Multi-Level Model Assessment Kit (Version 1.0.2)

2022
mlpwr: A Power Analysis Toolbox to Find Cost-Efficient Study Designs (Version 1.1.0)

2022
mlr3pipelines: Preprocessing Operators and Pipelines for 'mlr3' (Version 0.5.1)

2019
AICcmodavg: Model Selection and Multimodel Inference Based on (Q)AIC(c) (Version 2.3-3)

2009
ANOM: Analysis of Means (Version 0.5)

2015
ARTool: Aligned Rank Transform (Version 0.11.1)

2014
AgreementInterval: Agreement Interval of Two Measurement Methods (Version 0.1.1)

2018
AgroR: Experimental Statistics and Graphics for Agricultural Sciences (Version 1.3.5)

2021
BCClong: Bayesian Consensus Clustering for Multiple Longitudinal Features (Version 1.0.2)

2023
BClustLonG: A Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data (Version 0.1.3)

2017
BFpack: Flexible Bayes Factor Testing of Scientific Expectations (Version 1.2.3)

2019
BGData: A Suite of Packages for Analysis of Big Genomic Data (Version 2.4.1)

2017
BayesCACE: Bayesian Model for CACE Analysis (Version 1.2.3)

2021
BayesFactor: Computation of Bayes Factors for Common Designs (Version 0.9.12-4.7)

2012
BayesLN: Bayesian Inference for Log-Normal Data (Version 0.2.10)

2020
BayesSenMC: Different Models of Posterior Distributions of Adjusted Odds Ratio (Version 0.1.5)

2019
BradleyTerry2: Bradley-Terry Models (Version 1.1-2)

2010
CLME: Constrained Inference for Linear Mixed Effects Models (Version 2.0-12)

2014
CR2: Compute Cluster Robust Standard Errors with Degrees of Freedom Adjustments (Version 0.2.1)

2022
CRTspat: Workflow for Cluster Randomised Trials with Spillover (Version 1.2.0)

2023
CompositeReliability: Determine the Composite Reliability of a Naturalistic, Unbalanced Dataset (Version 1.0.3)

2023
DAAG: Data Analysis and Graphics Data and Functions (Version 1.25.4)

2005
DClusterm: Model-Based Detection of Disease Clusters (Version 1.0-1)

2017
DHARMa: Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models (Version 0.4.6)

2016
ESTER: Efficient Sequential Testing with Evidence Ratios (Version 0.2.0)

2017
EdSurvey: Analysis of NCES Education Survey and Assessment Data (Version 4.0.4)

2017
EgoCor: Simple Presentation of Estimated Exponential Semi-Variograms (Version 1.2.0)

2022
Epi: Statistical Analysis in Epidemiology (Version 2.48)

2005
FRK: Fixed Rank Kriging (Version 2.2.3)

2017
GLMMRR: Generalized Linear Mixed Model (GLMM) for Binary Randomized Response Data (Version 0.5.0)

2016
GLMMcosinor: Fit a Cosinor Model Using a Generalised Mixed Modelling Framework (Version 0.2.0)

2024
GLMpack: Data and Code to Accompany Generalized Linear Models, 2nd Edition (Version 0.1.0)

2019
HLMdiag: Diagnostic Tools for Hierarchical (Multilevel) Linear Models (Version 0.5.0)

2011
HSAUR: A Handbook of Statistical Analyses Using R (1st Edition) (Version 1.3-10)

2006
HSAUR2: A Handbook of Statistical Analyses Using R (2nd Edition) (Version 1.1-20)

2009
HSAUR3: A Handbook of Statistical Analyses Using R (3rd Edition) (Version 1.0-14)

2014
HelpersMG: Tools for Environmental Analyses, Ecotoxicology and Various R Functions (Version 6.1)

2015
HeritSeq: Heritability of Gene Expression for Next-Generation Sequencing (Version 1.0.2)

2017
ICCbin: Facilitates Clustered Binary Data Generation, and Estimation of Intracluster Correlation Coefficient (ICC) for Binary Data (Version 1.1.1)

2016
IDmeasurer: Assessment of Individual Identity in Animal Signals (Version 1.0.0)

2019
IMTest: Information Matrix Test for Generalized Partial Credit Models (Version 1.0.0)

2017
INLAjoint: Multivariate Joint Modeling for Longitudinal and Time-to-Event Outcomes with 'INLA' (Version 24.3.25)

2023
INSPECTumours: IN-vivo reSPonsE Classification of Tumours (Version 0.1.0)

2022
JWileymisc: Miscellaneous Utilities and Functions (Version 1.4.1)

2016
KFAS: Kalman Filter and Smoother for Exponential Family State Space Models (Version 1.5.1)

2009
KenSyn: Knowledge Synthesis in Agriculture - From Experimental Network to Meta-Analysis (Version 0.3)

2017
LAM: Some Latent Variable Models (Version 0.6-19)

2017
LEGIT: Latent Environmental & Genetic InTeraction (LEGIT) Model (Version 1.4.1)

2017
LKT: Logistic Knowledge Tracing (Version 1.6.0)

2021
LMERConvenienceFunctions: Model Selection and Post-Hoc Analysis for (G)LMER Models (Version 3.0)

2010
LMMstar: Repeated Measurement Models for Discrete Times (Version 1.0.1)

2021
LSAmitR: Daten, Beispiele und Funktionen zu 'Large-Scale Assessment mit R' (Version 1.0-3)

2016
LongDat: A Tool for 'Covariate'-Sensitive Longitudinal Analysis on 'omics' Data (Version 1.1.2)

2022
MAGNAMWAR: A Pipeline for Meta-Genome Wide Association (Version 2.0.4)

2017
MCM: Estimating and Testing Intergenerational Social Mobility Effect (Version 0.1.7)

2021
MDMR: Multivariate Distance Matrix Regression (Version 0.5.1)

2016
MEMSS: Data Sets from Mixed-Effects Models in S (Version 0.9-3)

2005
MESS: Miscellaneous Esoteric Statistical Scripts (Version 0.5.12)

2012
MF.beta4: Measuring Ecosystem Multi-Functionality and Its Decomposition (Version 1.0.3)

2023
MLID: Multilevel Index of Dissimilarity (Version 1.0.1)

2017
MLMusingR: Practical Multilevel Modeling (Version 0.3.2)

2022
MMeM: Multivariate Mixed Effects Model (Version 0.1.1)

2019
MOCHA: Modeling for Single-Cell Open Chromatin Analysis (Version 1.1.0)

2022
MXM: Feature Selection (Including Multiple Solutions) and Bayesian Networks (Version 1.5.5)

2014
MargCond: Joint Marginal-Conditional Model (Version 1.0.0)

2018
MedianaDesigner: Power and Sample Size Calculations for Clinical Trials (Version 0.13)

2021
MethComp: Analysis of Agreement in Method Comparison Studies (Version 1.30.0)

2011
MiRKAT: Microbiome Regression-Based Kernel Association Tests (Version 1.2.3)

2018
MixRF: A Random-Forest-Based Approach for Imputing Clustered Incomplete Data (Version 1.0)

2016
MixedPsy: Statistical Tools for the Analysis of Psychophysical Data (Version 1.1.0)

2017
MuMIn: Multi-Model Inference (Version 1.47.5)

2010
MultiRR: Bias, Precision, and Power for Multi-Level Random Regressions (Version 1.1)

2015
MultisiteMediation: Causal Mediation Analysis in Multisite Trials (Version 0.0.4)

2017
NHSRdatasets: NHS and Healthcare-Related Data for Education and Training (Version 0.3.0)

2019
OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink (Version 3.7.0)

2022
OnAge: Test of Between-Group Differences in the Onset of Senescence (Version 1.0.1)

2017
OpenMx: Extended Structural Equation Modelling (Version 2.21.11)

2015
PBImisc: A Set of Datasets Used in My Classes or in the Book 'Modele Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych' (Version 1.0)

2011
PLmixed: Estimate (Generalized) Linear Mixed Models with Factor Structures (Version 0.1.7)

2017
PStrata: Principal Stratification Analysis in R (Version 0.0.5)

2023
PSweight: Propensity Score Weighting for Causal Inference with Observational Studies and Randomized Trials (Version 1.2.0)

2020
PUMP: Power Under Multiplicity Project (Version 1.0.3)

2022
PheVis: Automatic Phenotyping of Electronic Health Record at Visit Resolution (Version 1.0.4)

2021
Phenotype: A Tool for Phenotypic Data Processing (Version 0.1.0)

2020
PoolTestR: Prevalence and Regression for Pool-Tested (Group-Tested) Data (Version 0.1.3)

2021
PrevMap: Geostatistical Modelling of Spatially Referenced Prevalence Data (Version 1.5.4)

2014
R2admb: 'ADMB' to R Interface Functions (Version 0.7.16.3)

2012
RESI: Robust Effect Size Index (RESI) Estimation (Version 1.2.4)

2022
REndo: Fitting Linear Models with Endogenous Regressors using Latent Instrumental Variables (Version 2.4.9)

2015
RLRsim: Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive Models (Version 3.1-8)

2007
RRreg: Correlation and Regression Analyses for Randomized Response Data (Version 0.7.5)

2014
RVAideMemoire: Testing and Plotting Procedures for Biostatistics (Version 0.9-83-7)

2011
Rcmdr: R Commander (Version 2.9-2)

2003
RcmdrPlugin.NMBU: R Commander Plug-in for University Level Applied Statistics (Version 1.8.15)

2014
RcmdrPlugin.TeachStat: R Commander Plugin for Teaching Statistical Methods (Version 1.1.3)

2018
RoBMA: Robust Bayesian Meta-Analyses (Version 3.1.0)

2020
SARP.compo: Network-Based Interpretation of Changes in Compositional Data (Version 0.1.8)

2018
SASmixed: Data sets from "SAS System for Mixed Models" (Version 1.0-4)

2000
SIAmodules: Modules for 'ShinyItemAnalysis' (Version 0.1.1)

2023
SPCDAnalyze: Design and Analyze Studies using the Sequential Parallel Comparison Design (Version 0.1.0)

2019
ScottKnott: The ScottKnott Clustering Algorithm (Version 1.3-2)

2009
ShinyItemAnalysis: Test and Item Analysis via Shiny (Version 1.5.0)

2016
SignacX: Cell Type Identification and Discovery from Single Cell Gene Expression Data (Version 2.2.5)

2021
SimSurvey: Test Surveys by Simulating Spatially-Correlated Populations (Version 0.1.6)

2020
SimplyAgree: Flexible and Robust Agreement and Reliability Analyses (Version 0.2.0)

2021
SlaPMEG: Pathway Testing for Longitudinal Omics (Version 1.0.1)

2020
SoyNAM: Soybean Nested Association Mapping Dataset (Version 1.6.2)

2015
StroupGLMM: R Codes and Datasets for Generalized Linear Mixed Models: Modern Concepts, Methods and Applications by Walter W. Stroup (Version 0.1.0)

2016
Surrogate: Evaluation of Surrogate Endpoints in Clinical Trials (Version 3.2.5)

2014
TcGSA: Time-Course Gene Set Analysis (Version 0.12.10)

2014
TripleR: Social Relation Model (SRM) Analyses for Single or Multiple Groups (Version 1.5.4)

2009
TukeyC: Conventional Tukey Test (Version 1.3-42)

2012
VAJointSurv: Variational Approximation for Joint Survival and Marker Models (Version 0.1.0)

2022
VCA: Variance Component Analysis (Version 1.5.1)

2015
VetResearchLMM: Linear Mixed Models - An Introduction with Applications in Veterinary Research (Version 1.0.0)

2016
WeMix: Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum Likelihood Estimation (Version 4.0.3)

2018
WebPower: Basic and Advanced Statistical Power Analysis (Version 0.9.4)

2018
ZIBR: A Zero-Inflated Beta Random Effect Model (Version 1.0.2)

2023
ZLAvian: Zipf's Law of Abbreviation in Animal Vocalisations (Version 0.1.0)

2023
actuaRE: Handling Hierarchically Structured Risk Factors using Random Effects Models (Version 0.1.5)

2023
afex: Analysis of Factorial Experiments (Version 1.3-1)

2012
agRee: Various Methods for Measuring Agreement (Version 0.5-3)

2012
agriutilities: Utilities for Data Analysis in Agriculture (Version 1.2.0)

2023
agridat: Agricultural Datasets (Version 1.23)

2011
aihuman: Experimental Evaluation of Algorithm-Assisted Human Decision-Making (Version 0.1.0)

2023
altmeta: Alternative Meta-Analysis Methods (Version 4.1)

2016
aod: Analysis of Overdispersed Data (Version 1.3.3)

2005
aods3: Analysis of Overdispersed Data using S3 Methods (Version 0.4-1.2)

2013
arm: Data Analysis Using Regression and Multilevel/Hierarchical Models (Version 1.14-4)

2007
attrib: Attributable Burden of Disease (Version 2021.1.2)

2021
autoMrP: Improving MrP with Ensemble Learning (Version 1.0.6)

2021
autoReg: Automatic Linear and Logistic Regression and Survival Analysis (Version 0.3.3)

2022
bapred: Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data) (Version 1.1)

2015
bartCause: Causal Inference using Bayesian Additive Regression Trees (Version 1.0-6)

2020
bayesammi: Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model (Version 0.1.0)

2018
bayestestR: Understand and Describe Bayesian Models and Posterior Distributions (Version 0.13.2)

2019
baystability: Bayesian Stability Analysis of Genotype by Environment Interaction (GEI) (Version 0.1.0)

2018
biometryassist: Functions to Assist Design and Analysis of Agronomic Experiments (Version 1.1.3)

2022
blme: Bayesian Linear Mixed-Effects Models (Version 1.0-5)

2011
blmeco: Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan" (Version 1.4)

2015
boot.pval: Bootstrap p-Values (Version 0.5)

2021
breakaway: Species Richness Estimation and Modeling (Version 4.8.4)

2014
brms: Bayesian Regression Models using 'Stan' (Version 2.21.0)

2015
brokenstick: Broken Stick Model for Irregular Longitudinal Data (Version 2.5.0)

2020
brolgar: Browse Over Longitudinal Data Graphically and Analytically in R (Version 1.0.0)

2020
broom.helpers: Helpers for Model Coefficients Tibbles (Version 1.15.0)

2020
broom.mixed: Tidying Methods for Mixed Models (Version 0.2.9.5)

2018
broom: Convert Statistical Objects into Tidy Tibbles (Version 1.0.5)

2014
bruceR: Broadly Useful Convenient and Efficient R Functions (Version 2023.9)

2021
buildmer: Stepwise Elimination and Term Reordering for Mixed-Effects Regression (Version 2.11)

2019
cAIC4: Conditional Akaike Information Criterion for 'lme4' and 'nlme' (Version 1.0)

2014
car: Companion to Applied Regression (Version 3.1-2)

2001
carcass: Estimation of the Number of Fatalities from Carcass Searches (Version 1.7)

2012
catdata: Categorical Data (Version 1.2.4)

2012
cgam: Constrained Generalized Additive Model (Version 1.21)

2014
chngpt: Estimation and Hypothesis Testing for Threshold Regression (Version 2023.11-29)

2013
ciTools: Confidence or Prediction Intervals, Quantiles, and Probabilities for Statistical Models (Version 0.6.1)

2017
cito: Building and Training Neural Networks (Version 1.1)

2022
climwin: Climate Window Analysis (Version 1.2.3)

2015
clinicalsignificance: A Toolbox for Clinical Significance Analyses in Intervention Studies (Version 2.0.0)

2022
clintools: Tools for Clinical Research (Version 0.9.10.1)

2021
clubSandwich: Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections (Version 0.5.10)

2016
clusteredinterference: Causal Effects from Observational Studies with Clustered Interference (Version 1.0.1)

2018
codebook: Automatic Codebooks from Metadata Encoded in Dataset Attributes (Version 0.9.2)

2018
confintROB: Bootstrap Confidence Intervals for Robust and Classical Linear Mixed Model Estimators (Version 1.0)

2024
correlation: Methods for Correlation Analysis (Version 0.8.4)

2020
cpr: Control Polygon Reduction (Version 0.4.0)

2017
crctStepdown: Univariate Analysis of Cluster Trials with Multiple Outcomes (Version 0.5.2)

2021
ctsem: Continuous Time Structural Equation Modelling (Version 3.9.1)

2015
cv: Cross-Validation of Regression Models (Version 1.1.0)

2023
cvms: Cross-Validation for Model Selection (Version 1.6.1)

2019
dataquieR: Data Quality in Epidemiological Research (Version 2.1.0)

2021
datawizard: Easy Data Wrangling and Statistical Transformations (Version 0.10.0)

2021
daySupply: Calculating Days' Supply and Daily Dose of Prescriptions (Version 0.1.0)

2021
demic: Dynamic Estimator of Microbial Communities (Version 2.0.0)

2024
designr: Balanced Factorial Designs (Version 0.1.13)

2019
dfmeta: Meta-Analysis of Phase I Dose-Finding Early Clinical Trials (Version 1.0.0)

2018
diagmeta: Meta-Analysis of Diagnostic Accuracy Studies with Several Cutpoints (Version 0.5-1)

2018
difR: Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF) (Version 5.1)

2009
dlnm: Distributed Lag Non-Linear Models (Version 2.4.7)

2009
dmlalg: Double Machine Learning Algorithms (Version 1.0.2)

2021
doBy: Groupwise Statistics, LSmeans, Linear Estimates, Utilities (Version 4.6.20)

2006
dominanceanalysis: Dominance Analysis (Version 2.1.0)

2019
domir: Tools to Support Relative Importance Analysis (Version 1.1.1)

2021
doremi: Dynamics of Return to Equilibrium During Multiple Inputs (Version 1.0.0)

2018
dscore: D-Score for Child Development (Version 1.8.0)

2020
eatRep: Educational Assessment Tools for Replication Methods (Version 0.14.7)

2021
ecostats: Code and Data Accompanying the Eco-Stats Text (Warton 2022) (Version 1.1.11)

2020
eefAnalytics: Robust Analytical Methods for Evaluating Educational Interventions using Randomised Controlled Trials Designs (Version 1.1.1)

2017
effects: Effect Displays for Linear, Generalized Linear, and Other Models (Version 4.2-2)

2003
effectsize: Indices of Effect Size (Version 0.8.7)

2019
eirm: Explanatory Item Response Modeling for Dichotomous and Polytomous Items (Version 0.5)

2020
embed: Extra Recipes for Encoding Predictors (Version 1.1.4)

2018
emmeans: Estimated Marginal Means, aka Least-Squares Means (Version 1.10.1)

2017
epimdr: Functions and Data for "Epidemics: Models and Data in R" (Version 0.6-5)

2018
epimdr2: Functions and Data for "Epidemics: Models and Data in R (2nd Edition)" (Version 1.0-9)

2022
epr: Easy Polynomial Regression (Version 3.0)

2012
evolvability: Calculation of Evolvability Parameters (Version 2.0.0)

2014
eyetrackingR: Eye-Tracking Data Analysis (Version 0.2.1)

2015
ez: Easy Analysis and Visualization of Factorial Experiments (Version 4.4-0)

2009
faraway: Functions and Datasets for Books by Julian Faraway (Version 1.0.8)

2005
fastFMM: Fast Functional Mixed Models using Fast Univariate Inference (Version 0.2.0)

2023
faux: Simulation for Factorial Designs (Version 1.2.1)

2020
fence: Using Fence Methods for Model Selection (Version 1.0)

2017
finalfit: Quickly Create Elegant Regression Results Tables and Plots when Modelling (Version 1.0.7)

2018
finetune: Additional Functions for Model Tuning (Version 1.2.0)

2020
fishmethods: Fishery Science Methods and Models (Version 1.12-1)

2009
flexmix: Flexible Mixture Modeling (Version 2.3-19)

2003
flextable: Functions for Tabular Reporting (Version 0.9.5)

2017
fullfact: Full Factorial Breeding Analysis (Version 1.5.2)

2016
galamm: Generalized Additive Latent and Mixed Models (Version 0.2.0)

2023
gamair: Data for 'GAMs: An Introduction with R' (Version 1.0-2)

2005
gamm4: Generalized Additive Mixed Models using 'mgcv' and 'lme4' (Version 0.2-6)

2009
geeasy: Solve Generalized Estimating Equations for Clustered Data (Version 0.1.1)

2022
geex: An API for M-Estimation (Version 1.1.1)

2017
glm.predict: Predicted Values and Discrete Changes for Regression Models (Version 4.3-0)

2016
glmertree: Generalized Linear Mixed Model Trees (Version 0.2-4)

2017
glmglrt: GLRT P-Values in Generalized Linear Models (Version 0.2.2)

2020
glmm.hp: Hierarchical Partitioning of Marginal R2 for Generalized Mixed-Effect Models (Version 0.1-2)

2022
glmmEP: Generalized Linear Mixed Model Analysis via Expectation Propagation (Version 1.0-3.1)

2018
glmmML: Generalized Linear Models with Clustering (Version 1.1.6)

2003
glmmPen: High Dimensional Penalized Generalized Linear Mixed Models (pGLMM) (Version 1.5.4.4)

2022
glmmTMB: Generalized Linear Mixed Models using Template Model Builder (Version 1.1.9)

2017
glmmSeq: General Linear Mixed Models for Gene-Level Differential Expression (Version 0.5.5)

2021
glmulti: Model Selection and Multimodel Inference Made Easy (Version 1.0.8)

2009
gmodels: Various R Programming Tools for Model Fitting (Version 2.19.1)

2005
gorica: Evaluation of Inequality Constrained Hypotheses Using GORICA (Version 0.1.4)

2019
grafify: Easy Graphs for Data Visualisation and Linear Models for ANOVA (Version 4.0.1)

2022
gratia: Graceful 'ggplot'-Based Graphics and Other Functions for GAMs Fitted Using 'mgcv' (Version 0.9.0)

2019
gtheory: Apply Generalizability Theory with R (Version 0.1.2)

2016
gtsummary: Presentation-Ready Data Summary and Analytic Result Tables (Version 1.7.2)

2019
gvcR: Genotypic Variance Components (Version 0.1.0)

2018
hamlet: Hierarchical Optimal Matching and Machine Learning Toolbox (Version 0.9.6)

2014
hmclearn: Fit Statistical Models Using Hamiltonian Monte Carlo (Version 0.0.5)

2020
hnp: Half-Normal Plots with Simulation Envelopes (Version 1.2-6)

2014
huxtable: Easily Create and Style Tables for LaTeX, HTML and Other Formats (Version 5.5.6)

2017
ib: Bias Correction via Iterative Bootstrap (Version 0.2.0)

2020
iccbeta: Multilevel Model Intraclass Correlation for Slope Heterogeneity (Version 1.2.0)

2017
immer: Item Response Models for Multiple Ratings (Version 1.5-13)

2015
inferference: Methods for Causal Inference with Interference (Version 1.0.2)

2015
influence.ME: Tools for Detecting Influential Data in Mixed Effects Models (Version 0.9-9)

2009
injurytools: A Toolkit for Sports Injury Data Analysis (Version 1.0.3)

2023
insight: Easy Access to Model Information for Various Model Objects (Version 0.19.10)

2019
intRvals: Analysis of Time-Ordered Event Data with Missed Observations (Version 1.0.1)

2017
interactions: Comprehensive, User-Friendly Toolkit for Probing Interactions (Version 1.1.5)

2019
inti: Tools and Statistical Procedures in Plant Science (Version 0.6.4)

2020
ipmr: Integral Projection Models (Version 0.0.7)

2021
irtrees: Estimation of Tree-Based Item Response Models (Version 1.0.0)

2012
isni: Index of Local Sensitivity to Nonignorability (Version 1.3)

2018
jlctree: Joint Latent Class Trees for Joint Modeling of Time-to-Event and Longitudinal Data (Version 0.0.2)

2018
jlmerclusterperm: Cluster-Based Permutation Analysis for Densely Sampled Time Data (Version 1.1.3)

2023
joineRML: Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes (Version 0.4.6)

2016
jomo: Multilevel Joint Modelling Multiple Imputation (Version 2.7-6)

2014
jstable: Create Tables from Different Types of Regression (Version 1.1.9)

2019
jtools: Analysis and Presentation of Social Scientific Data (Version 2.2.2)

2017
konfound: Quantify the Robustness of Causal Inferences (Version 0.5.1)

2018
kyotil: Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies (Version 2024.1-30)

2013
languageR: Analyzing Linguistic Data: A Practical Introduction to Statistics (Version 1.5.0)

2007
latrend: A Framework for Clustering Longitudinal Data (Version 1.6.0)

2020
lava: Latent Variable Models (Version 1.8.0)

2012
lavaSearch2: Tools for Model Specification in the Latent Variable Framework (Version 2.0.3)

2018
lefko3: Historical and Ahistorical Population Projection Matrix Analysis (Version 6.2.1)

2020
likelihoodAsy: Functions for Likelihood Asymptotics (Version 0.51)

2015
likelihoodR: Likelihood Analyses for Common Statistical Tests (Version 1.1.4)

2021
lmeInfo: Information Matrices for 'lmeStruct' and 'glsStruct' Objects (Version 0.3.2)

2020
lmerTest: Tests in Linear Mixed Effects Models (Version 3.1-3)

2013
lmeresampler: Bootstrap Methods for Nested Linear Mixed-Effects Models (Version 0.2.4)

2016
lmfor: Functions for Forest Biometrics (Version 1.6)

2015
longmixr: Longitudinal Consensus Clustering with 'flexmix' (Version 1.0.0)

2022
longpower: Sample Size Calculations for Longitudinal Data (Version 1.0.25)

2010
longsurr: Longitudinal Surrogate Marker Analysis (Version 1.0)

2022
lucid: Printing Floating Point Numbers in a Human-Friendly Format (Version 1.8)

2014
lvmisc: Veras Miscellaneous (Version 0.1.2)

2021
macc: Mediation Analysis of Causality under Confounding (Version 1.0.1)

2016
manymodelr: Build and Tune Several Models (Version 0.3.7)

2019
marginaleffects: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis Tests (Version 0.19.0)

2021
marked: Mark-Recapture Analysis for Survival and Abundance Estimation (Version 1.2.8)

2013
matrixset: Creating, Manipulating and Annotating Matrix Ensemble (Version 0.3.0)

2023
mbest: Moment-Based Estimation for Hierarchical Models (Version 0.6)

2014
mecor: Measurement Error Correction in Linear Models with a Continuous Outcome (Version 1.0.0)

2021
mediation: Causal Mediation Analysis (Version 4.5.0)

2009
memisc: Management of Survey Data and Presentation of Analysis Results (Version 0.99.31.7)

2007
merDeriv: Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models (Version 0.2-4)

2017
merTools: Tools for Analyzing Mixed Effect Regression Models (Version 0.6.2)

2015
meta: General Package for Meta-Analysis (Version 7.0-0)

2006
metadat: Meta-Analysis Datasets (Version 1.2-0)

2021
metafor: Meta-Analysis Package for R (Version 4.6-0)

2009
metamicrobiomeR: Microbiome Data Analysis & Meta-Analysis with GAMLSS-BEZI & Random Effects (Version 1.2)

2019
metamisc: Meta-Analysis of Diagnosis and Prognosis Research Studies (Version 0.4.0)

2012
metan: Multi Environment Trials Analysis (Version 1.18.0)

2020
metaplus: Robust Meta-Analysis and Meta-Regression (Version 1.0-4)

2014
metarep: Replicability-Analysis Tools for Meta-Analysis (Version 1.2.0)

2020
mice: Multivariate Imputation by Chained Equations (Version 3.16.0)

2006
miceadds: Some Additional Multiple Imputation Functions, Especially for 'mice' (Version 3.17-44)

2014
micemd: Multiple Imputation by Chained Equations with Multilevel Data (Version 1.10.0)

2017
misty: Miscellaneous Functions 'T. Yanagida' (Version 0.6.2)

2020
mitml: Tools for Multiple Imputation in Multilevel Modeling (Version 0.4-5)

2015
mixAK: Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering (Version 5.7)

2009
mixlm: Mixed Model ANOVA and Statistics for Education (Version 1.3.0)

2015
mmrm: Mixed Models for Repeated Measures (Version 0.3.11)

2022
modelbased: Estimation of Model-Based Predictions, Contrasts and Means (Version 0.8.7)

2020
modelfactory: Combine Statistical Models into a Tibble for Comparison (Version 1.0.0)

2024
modelsummary: Summary Tables and Plots for Statistical Models and Data: Beautiful, Customizable, and Publication-Ready (Version 2.0.0)

2019
modnets: Modeling Moderated Networks (Version 0.9.0)

2021
mult.latent.reg: Regression and Clustering in Multivariate Response Scenarios (Version 0.1.7)

2024
multcomp: Simultaneous Inference in General Parametric Models (Version 1.4-25)

2002
multiDimBio: Multivariate Analysis and Visualization for Biological Data (Version 1.2.2)

2013
multiblock: Multiblock Data Fusion in Statistics and Machine Learning (Version 0.8.8.1)

2021
multid: Multivariate Difference Between Two Groups (Version 1.0.0)

2021
multilevelTools: Multilevel and Mixed Effects Model Diagnostics and Effect Sizes (Version 0.1.1)

2020
multilevelmod: Model Wrappers for Multi-Level Models (Version 1.0.0)

2022
multisite.accuracy: Estimation of Accuracy in Multisite Machine-Learning Models (Version 1.2)

2021
multitool: Run Multiverse Style Analyses (Version 0.1.4)

2023
mvMISE: A General Framework of Multivariate Mixed-Effects Selection Models (Version 1.0)

2018
mxnorm: Apply Normalization Methods to Multiplexed Images (Version 1.0.3)

2022
netmediate: Micro-Macro Analysis for Social Networks (Version 0.1.4)

2022
omics: '–omics' Data Analysis Toolbox (Version 0.1-5)

2015
ordinal: Regression Models for Ordinal Data (Version 2023.12-4)

2010
packDAMipd: Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data (Version 1.1.0)

2020
pamm: Power Analysis for Random Effects in Mixed Models (Version 1.122)

2009
pan: Multiple Imputation for Multivariate Panel or Clustered Data (Version 1.9)

2003
panelr: Regression Models and Utilities for Repeated Measures and Panel Data (Version 0.7.8)

2019
papaja: Prepare American Psychological Association Journal Articles with R Markdown (Version 0.1.2)

2022
papeR: A Toolbox for Writing Pretty Papers and Reports (Version 1.0-5)

2013
parameters: Processing of Model Parameters (Version 0.21.6)

2019
partR2: Partitioning R2 in GLMMs (Version 0.9.2)

2021
pbkrtest: Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models (Version 0.5.2)

2011
pcgen: Reconstruction of Causal Networks for Data with Random Genetic Effects (Version 0.2.0)

2018
pda: Privacy-Preserving Distributed Algorithms (Version 1.2.7)

2020
pedigreemm: Pedigree-Based Mixed-Effects Models (Version 0.3-4)

2009
peramo: Permutation Tests for Randomization Model (Version 0.1.3)

2022
performance: Assessment of Regression Models Performance (Version 0.11.0)

2019
permutes: Permutation Tests for Time Series Data (Version 2.8)

2019
pez: Phylogenetics for the Environmental Sciences (Version 1.2-4)

2014
phia: Post-Hoc Interaction Analysis (Version 0.3-1)

2012
phyr: Model Based Phylogenetic Analysis (Version 1.1.0)

2019
piecewiseSEM: Piecewise Structural Equation Modeling (Version 2.3.0)

2015
plgraphics: User Oriented Plotting Functions (Version 1.2)

2023
polypoly: Helper Functions for Orthogonal Polynomials (Version 0.0.3)

2017
postHoc: Tools for Post-Hoc Analysis (Version 0.1.3)

2020
powerbydesign: Power Estimates for ANOVA Designs (Version 1.0.5)

2016
predictmeans: Predicted Means for Linear and Semiparametric Models (Version 1.1.0)

2014
predint: Prediction Intervals (Version 2.2.1)

2021
projpred: Projection Predictive Feature Selection (Version 2.8.0)

2018
psfmi: Prediction Model Pooling, Selection and Performance Evaluation Across Multiply Imputed Datasets (Version 1.4.0)

2019
psycModel: Integrated Toolkit for Psychological Analysis and Modeling in R (Version 0.5.0)

2021
psych: Procedures for Psychological, Psychometric, and Personality Research (Version 2.4.3)

2007
ptmixed: Poisson-Tweedie Generalized Linear Mixed Model (Version 1.1.3)

2019
pubh: A Toolbox for Public Health and Epidemiology (Version 1.3.2)

2018
purge: Purge Training Data from Models (Version 0.2.1)

2015
pwlmm: PWIGLS for Two-Level Multivariate and Multilevel Linear Models (Version 1.1.1)

2022
qape: Quantile of Absolute Prediction Errors (Version 2.1)

2020
qra: Quantal Response Analysis for Dose-Mortality Data (Version 0.2.7)

2021
quest: Prepare Questionnaire Data for Analysis (Version 0.2.0)

2021
r2glmm: Computes R Squared for Mixed (Multilevel) Models (Version 0.1.2)

2016
r2mlm: R-Squared Measures for Multilevel Models (Version 0.3.7)

2020
rADA: Statistical Analysis and Cut-Point Determination of Immunoassays (Version 1.1.9)

2021
raincin: Ranking with Incomplete Information (Version 1.0.3)

2020
reformulas: Machinery for Processing Random Effect Formulas (Version 0.2.0)

2024
refund.shiny: Interactive Plotting for Functional Data Analyses (Version 1.0)

2015
refund: Regression with Functional Data (Version 0.1-35)

2010
reghelper: Helper Functions for Regression Analysis (Version 1.1.2)

2017
registr: Curve Registration for Exponential Family Functional Data (Version 2.1.0)

2020
regplot: Enhanced Regression Nomogram Plot (Version 1.1)

2017
repmod: Create Report Table from Different Objects (Version 0.1.7)

2021
report: Automated Reporting of Results and Statistical Models (Version 0.5.8)

2021
reproducer: Reproduce Statistical Analyses and Meta-Analyses (Version 0.5.3)

2015
rewie: Data Preparation and Diagnostics for Random Effects Within Estimator (Version 0.1.0)

2020
rfars: Download and Analyze Crash Data (Version 1.2.0)

2022
rmcorr: Repeated Measures Correlation (Version 0.6.0)

2016
robustBLME: Robust Bayesian Linear Mixed-Effects Models using ABC (Version 0.1.3)

2017
robustlmm: Robust Linear Mixed Effects Models (Version 3.3-1)

2013
rockchalk: Regression Estimation and Presentation (Version 1.8.157)

2011
rosetta: Parallel Use of Statistical Packages in Teaching (Version 0.3.12)

2019
rpql: Regularized PQL for Joint Selection in GLMMs (Version 0.8.1)

2016
rptR: Repeatability Estimation for Gaussian and Non-Gaussian Data (Version 0.9.22)

2016
rr2: R2s for Regression Models (Version 1.1.1)

2018
rsq: R-Squared and Related Measures (Version 2.6)

2016
rstanarm: Bayesian Applied Regression Modeling via Stan (Version 2.32.1)

2016
rties: Modeling Interpersonal Dynamics (Version 5.0.0)

2020
sae: Small Area Estimation (Version 1.3)

2013
saeczi: Small Area Estimation for Continuous Zero Inflated Data (Version 0.1.3)

2024
samplingDataCRT: Sampling Data Within Different Study Designs for Cluster Randomized Trials (Version 1.0)

2017
sandwich: Robust Covariance Matrix Estimators (Version 3.1-0)

2004
sdmTMB: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB' (Version 0.5.0)

2023
see: Model Visualisation Toolbox for 'easystats' and 'ggplot2' (Version 0.8.3)

2019
semEff: Automatic Calculation of Effects for Piecewise Structural Equation Models (Version 0.6.1)

2019
sense: Automatic Stacked Ensemble for Regression Tasks (Version 1.0.0)

2021
shinybrms: Graphical User Interface ('shiny' App) for 'brms' (Version 1.8.0)

2020
siland: Spatial Influence of Landscape (Version 3.0.2)

2017
simglm: Simulate Models Based on the Generalized Linear Model (Version 0.8.9)

2017
simr: Power Analysis for Generalised Linear Mixed Models by Simulation (Version 1.0.7)

2015
singcar: Comparing Single Cases to Small Samples (Version 0.1.5)

2020
sjPlot: Data Visualization for Statistics in Social Science (Version 2.8.15)

2013
sjstats: Collection of Convenient Functions for Common Statistical Computations (Version 0.18.2)

2016
sjtable2df: Convert 'sjPlot' HTML-Tables to R 'data.frame' (Version 0.0.3)

2022
skpr: Design of Experiments Suite: Generate and Evaluate Optimal Designs (Version 1.7.1)

2017
sleev: Semiparametric Likelihood Estimation with Errors in Variables (Version 1.0.3)

2021
slim: Singular Linear Models for Longitudinal Data (Version 0.1.1)

2016
smicd: Statistical Methods for Interval-Censored Data (Version 1.1.3)

2018
spAbundance: Univariate and Multivariate Spatial Modeling of Species Abundance (Version 0.1.3)

2023
spOccupancy: Single-Species, Multi-Species, and Integrated Spatial Occupancy Models (Version 0.7.6)

2021
spaMM: Mixed-Effect Models, with or without Spatial Random Effects (Version 4.4.16)

2013
specr: Conducting and Visualizing Specification Curve Analyses (Version 1.0.0)

2020
splithalf: Calculate Task Split Half Reliability Estimates (Version 0.8.2)

2017
spsurvey: Spatial Sampling Design and Analysis (Version 5.5.1)

2007
squid: Statistical Quantification of Individual Differences (Version 0.2.1)

2016
stabiliser: Stabilising Variable Selection (Version 1.0.6)

2021
stability: Stability Analysis of Genotype by Environment Interaction (GEI) (Version 0.5.0)

2018
stan4bart: Bayesian Additive Regression Trees with Stan-Sampled Parametric Extensions (Version 0.0-7)

2021
standardize: Tools for Standardizing Variables for Regression in R (Version 0.2.2)

2017
stargazer: Well-Formatted Regression and Summary Statistics Tables (Version 5.2.3)

2012
statgenGxE: Genotype by Environment (GxE) Analysis (Version 1.0.7)

2020
statgenSTA: Single Trial Analysis (STA) of Field Trials (Version 1.0.12)

2020
stevemisc: Steve's Miscellaneous Functions (Version 1.7.0)

2021
structree: Tree-Structured Clustering (Version 1.1.7)

2016
supernova: Judd, McClelland, & Ryan Formatting for ANOVA Output (Version 3.0.0)

2018
surrosurv: Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses (Version 1.1.26)

2016
svylme: Linear Mixed Models for Complex Survey Data (Version 1.5-1)

2024
swCRTdesign: Stepped Wedge Cluster Randomized Trial (SW CRT) Design (Version 4.0)

2016
swaprinc: Swap Principal Components into Regression Models (Version 1.0.1)

2023
tableone: Create 'Table 1' to Describe Baseline Characteristics with or without Propensity Score Weights (Version 0.13.2)

2014
texreg: Conversion of R Regression Output to LaTeX or HTML Tables (Version 1.39.3)

2012
tidyLPA: Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source or Commercial Software (Version 1.1.0)

2018
tidyfit: Regularized Linear Modeling with Tidy Data (Version 0.7.1)

2022
tidystats: Save Output of Statistical Tests (Version 0.6.1)

2017
tram: Transformation Models (Version 1.0-3)

2018
tramME: Transformation Models with Mixed Effects (Version 1.0.5)

2020
trouBBlme4SolveR: Troubles Solver for 'lme4' (Version 0.1.1)

2022
tukeytrend: Tukeys Trend Test via Multiple Marginal Models (Version 0.7)

2017
ubms: Bayesian Models for Data from Unmarked Animals using 'Stan' (Version 1.2.6)

2021
unmarked: Models for Data from Unmarked Animals (Version 1.4.1)

2010
varTestnlme: Variance Components Testing for Linear and Nonlinear Mixed Effects Models (Version 1.3.5)

2020
vcPB: Longitudinal PB Varying-Coefficient Groupwise Disparity Model (Version 1.1.1)

2024
vglmer: Variational Inference for Hierarchical Generalized Linear Models (Version 1.0.3)

2022
vtreat: A Statistically Sound 'data.frame' Processor/Conditioner (Version 1.6.4)

2015
warpMix: Mixed Effects Modeling with Warping for Functional Data Using B-Spline (Version 0.1.0)

2017
weights: Weighting and Weighted Statistics (Version 1.0.4)

2011
welchADF: Welch-James Statistic for Robust Hypothesis Testing under Heterocedasticity and Non-Normality (Version 0.3.2)

2017

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