Referenced by ⇅
Year
biosurvey : Tools for Biological Survey Planning (Version 0.1.1)
2021
bnspatial : Spatial Implementation of Bayesian Networks and Mapping (Version 1.1.1)
2016
ccdf : Distribution-Free Single-Cell Differential Expression Analysis (Version 1.1.4)
2021
censusxy : Access the U.S. Census Bureau"s Geocoding A.P.I. System (Version 1.1.1)
2019
chickn : "Compressive" Hierarchical Kernel Clustering Toolbox (Version 1.2.3)
2020
CIDER : Meta-Clustering for Single-Cell Data Integration and Evaluation (Version 0.99.1)
2021
clustDRM : Clustering Dose-Response Curves and Fitting Appropriate Models
to Them (Version 0.1-0)
2019
clusterPower : Power Calculations for Cluster-Randomized and Cluster-Randomized
Crossover Trials (Version 0.7.0)
2011
DCD : Differential Community Detection in Paired Biological Networks (Version 0.1.0)
2017
DistributionFitR : Fitting Multiple Parametric Distributions (Version 0.1)
2020
dnet : Integrative Analysis of Omics Data in Terms of Network,
Evolution and Ontology (Version 1.1.7)
2014
dtwSat : Time-Weighted Dynamic Time Warping for Satellite Image Time
Series Analysis (Version 1.0.0)
2015
feamiR : Classification and Feature Selection for microRNA/mRNA
Interactions (Version 0.1.0)
2021
GWPR.light : Geographically Weighted Panel Regression (Version 0.2.1)
2021
HDtest : High Dimensional Hypothesis Testing for Mean Vectors, Covariance
Matrices, and White Noise of Vector Time Series (Version 2.1)
2016
hybridEnsemble : Build, Deploy and Evaluate Hybrid Ensembles (Version 1.7.9)
2013
idmTPreg : Regression Model for Progressive Illness Death Data (Version 1.1)
2017
IFAA : Robust Inference for Absolute Abundance in Microbiome Analysis (Version 1.1.2)
2020
inlmisc : Miscellaneous Functions for the USGS INL Project Office (Version 0.5.5)
2016
liGP : Locally Induced Gaussian Process Regression (Version 1.0.1)
2021
mbclusterwise : Clusterwise Multiblock Analyses (Version 1.0)
2016
minimaxdesign : Minimax and Minimax Projection Designs (Version 0.1.5)
2016
molic : Multivariate Outlier Detection in Contingency Tables (Version 2.0.3)
2020
MoMPCA : Inference and Clustering for Mixture of Multinomial Principal
Component Analysis (Version 1.0.1)
2020
odpc : One-Sided Dynamic Principal Components (Version 2.0.5)
2017
ORdensity : Identification of Differentially Expressed Genes (Version 1.0)
2020
parallelML : A Parallel-Voting Algorithm for many Classifiers (Version 1.2)
2015
pcoxtime : Penalized Cox Proportional Hazard Model for Time-Dependent
Covariates (Version 1.0.4)
2021
penDvine : Flexible Pair-Copula Estimation in D-Vines using Bivariate
Penalized Splines (Version 0.2.4)
2012
piRF : Prediction Intervals for Random Forests (Version 0.1.0)
2020
pspline.inference : Estimation of Characteristics of Seasonal and Sporadic
Infectious Disease Outbreaks Using Generalized Additive
Modeling with Penalized Basis Splines (Version 1.0.4)
2020
qualypsoss : Uncertainties of Climate Projections using Smoothing Splines (Version 1.1.1)
2019
R.SamBada : Processing Pipeline for "SamBada" from Pre- To Post-Processing (Version 0.1.3)
2019
RAEN : Random Approximate Elastic Net (RAEN) Variable Selection Method (Version 0.2)
2021
Rlda : Bayesian LDA for Mixed-Membership Clustering Analysis (Version 0.2.6)
2017
scTEP : Single-Cell Trajectory Inference using Ensemble Pseudotimes (Version 0.1.0)
2022
sen2r : Find, Download and Process Sentinel-2 Data (Version 1.6.0)
2019
sglOptim : Generic Sparse Group Lasso Solver (Version 1.3.8)
2013
SimRVPedigree : Simulate Pedigrees Ascertained for a Rare Disease (Version 0.4.4)
2017
smog : Structural Modeling by using Overlapped Group Penalty (Version 2.1.0)
2019
tempoR : Characterizing Temporal Dysregulation (Version 1.0.4.4)
2019
utr.annotation : Annotate Variants in the Untranslated Regions (Version 1.0.4)
2021
WEE : Weighted Estimated Equation (WEE) Approaches in Genetic
Case-Control Studies (Version 1.0)
2016
lpjmlkit : Toolkit for Basic LPJmL Handling (Version 1.0.11)
2023
eiCompare : Compares Different Ecological Inference Methods (Version 3.0.4)
2016
ExprNet : Characterizing Differential Expression of Selected Edges on a
Network (Version 1.0.0)
2023
stUPscales : Spatio-Temporal Uncertainty Propagation Across Multiple Scales (Version 1.0.3.5)
2018
armada : A Statistical Methodology to Select Covariates in High-Dimensional Data under Dependence (Version 0.1.0)
2019
comradesOO : Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data (Version 0.1.1)
2023
FastRet : Retention Time Prediction in Liquid Chromatography (Version 1.1.3)
2024
rDNAse : Generating Various Numerical Representation Schemes of DNA Sequences (Version 1.1-1)
2016
NADIA : NA Data Imputation Algorithms (Version 0.4.2)
2020
StrucDiv : Spatial Structural Diversity Quantification in Raster Data (Version 0.2.1)
2022
GLIDE : Global and Individual Tests for Direct Effects (Version 1.0.5)
2017
myTAI : Evolutionary Transcriptomics (Version 0.9.3)
2014
WpProj : Linear p-Wasserstein Projections (Version 0.2.1)
2024
HTSSIP : High Throughput Sequencing of Stable Isotope Probing Data Analysis (Version 1.4.1)
2016
MXM : Feature Selection (Including Multiple Solutions) and Bayesian Networks (Version 1.5.5)
2014
MetaLonDA : Metagenomics Longitudinal Differential Abundance Method (Version 1.1.8)
2017
serocalculator : Estimating Infection Rates from Serological Data (Version 1.0.3)
2024
AATtools : Reliability and Scoring Routines for the Approach-Avoidance Task (Version 0.0.3)
2020
ADAPTS : Automated Deconvolution Augmentation of Profiles for Tissue Specific Cells (Version 1.0.22)
2019
ADMM : Algorithms using Alternating Direction Method of Multipliers (Version 0.3.3)
2017
ADMMsigma : Penalized Precision Matrix Estimation via ADMM (Version 2.1)
2018
AEenrich : Adverse Event Enrichment Tests (Version 1.1.0)
2020
AICcPermanova : Model Selection of PERMANOVA Models Using AICc (Version 0.0.2)
2023
APIS : Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents (Version 2.0.8)
2019
AZIAD : Analyzing Zero-Inflated and Zero-Altered Data (Version 0.0.3)
2022
AlignLV : Multiple Group Item Response Theory Alignment Helpers for 'lavaan' and 'mirt' (Version 0.1.0.0)
2024
ApacheLogProcessor : Process the Apache Web Server Log Files (Version 0.2.3)
2015
Arothron : Geometric Morphometric Methods and Virtual Anthropology Tools (Version 2.0.5)
2018
BDWreg : Bayesian Inference for Discrete Weibull Regression (Version 1.3.0)
2016
BIEN : Tools for Accessing the Botanical Information and Ecology Network Database (Version 1.2.6)
2017
BMTAR : Bayesian Approach for MTAR Models with Missing Data (Version 0.1.1)
2020
BSGW : Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression (Version 0.9.4)
2014
BSL : Bayesian Synthetic Likelihood (Version 3.2.5)
2018
BVSNLP : Bayesian Variable Selection in High Dimensional Settings using Nonlocal Priors (Version 1.1.9)
2017
BayesBinMix : Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions (Version 1.4.1)
2016
BayesianPlatformDesignTimeTrend : Simulate and Analyse Bayesian Platform Trial with Time Trend (Version 1.2.3)
2023
BeeGUTS : General Unified Threshold Model of Survival for Bees using Bayesian Inference (Version 1.3.0)
2022
BlockMissingData : Integrating Multi-Source Block-Wise Missing Data in Model Selection (Version 0.1.0)
2023
BootstrapQTL : Bootstrap cis-QTL Method that Corrects for the Winner's Curse (Version 1.0.5)
2018
C443 : See a Forest for the Trees (Version 3.4.0)
2018
CARRoT : Predicting Categorical and Continuous Outcomes Using One in Ten Rule (Version 3.0.2)
2018
CAST : 'caret' Applications for Spatial-Temporal Models (Version 1.0.2)
2018
CDatanet : Econometrics of Network Data (Version 2.2.0)
2021
CFC : Cause-Specific Framework for Competing-Risk Analysis (Version 1.2.0)
2015
CICI : Causal Inference with Continuous (Multiple Time Point) Interventions (Version 0.9.4)
2023
CIMTx : Causal Inference for Multiple Treatments with a Binary Outcome (Version 1.2.0)
2020
CIpostSelect : Confidence Interval Post-Selection of Variable (Version 0.2.1)
2024
CNVScope : A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization (Version 3.7.2)
2018
COMMA : Correcting Misclassified Mediation Analysis (Version 1.1.1)
2024
CPAT : Change Point Analysis Tests (Version 0.1.0)
2018
CVglasso : Lasso Penalized Precision Matrix Estimation (Version 1.0)
2018
CalibratR : Mapping ML Scores to Calibrated Predictions (Version 0.1.2)
2018
CircSpaceTime : Spatial and Spatio-Temporal Bayesian Model for Circular Data (Version 0.9.0)
2019
ClusROC : ROC Analysis in Three-Class Classification Problems for Clustered Data (Version 1.0.2)
2022
ClustAssess : Tools for Assessing Clustering (Version 0.3.0)
2021
ClustVarLV : Clustering of Variables Around Latent Variables (Version 2.1.1)
2013
ClusterVAR : Fitting Latent Class Vector-Autoregressive (VAR) Models (Version 0.0.8)
2024
CoNI : Correlation Guided Network Integration (CoNI) (Version 0.1.0)
2021
CoTiMA : Continuous Time Meta-Analysis ('CoTiMA') (Version 0.8.0)
2021
CohortPlat : Simulation of Cohort Platform Trials for Combination Treatments (Version 1.0.5)
2021
Compositional : Compositional Data Analysis (Version 7.2)
2016
CompositionalML : Machine Learning with Compositional Data (Version 1.0)
2024
CompositionalRF : Multivariate Random Forest with Compositional Responses (Version 1.0)
2024
CopernicusDEM : Copernicus Digital Elevation Models (Version 1.0.5)
2021
CopulaInference : Estimation and Goodness-of-Fit of Copula-Based Models with Arbitrary Distributions (Version 0.5.0)
2023
Counterfactual : Estimation and Inference Methods for Counterfactual Analysis (Version 1.2)
2016
CovTools : Statistical Tools for Covariance Analysis (Version 0.5.4)
2017
CptNonPar : Nonparametric Change Point Detection for Multivariate Time Series (Version 0.2.1)
2023
DAISIE : Dynamical Assembly of Islands by Speciation, Immigration and Extinction (Version 4.4.1)
2015
DCSmooth : Nonparametric Regression and Bandwidth Selection for Spatial Models (Version 1.1.2)
2021
DEBBI : Differential Evolution-Based Bayesian Inference (Version 0.1.0)
2022
DEHOGT : Differentially Expressed Heterogeneous Overdispersion Gene Test for Count Data (Version 0.99.0)
2024
DMtest : Differential Methylation Tests (DMtest) (Version 1.0.0)
2021
DNMF : Discriminant Non-Negative Matrix Factorization (Version 1.4.2)
2015
DTDA.cif : Doubly Truncated Data Analysis, Cumulative Incidence Functions (Version 1.0.2)
2019
DTDA : Doubly Truncated Data Analysis (Version 3.0.1)
2009
DiceKriging : Kriging Methods for Computer Experiments (Version 1.6.0)
2010
Diderot : Bibliographic Network Analysis (Version 0.13)
2017
Dire : Linear Regressions with a Latent Outcome Variable (Version 2.2.0)
2021
Directional : A Collection of Functions for Directional Data Analysis (Version 7.0)
2015
Distance : Distance Sampling Detection Function and Abundance Estimation (Version 2.0.0)
2012
DynForest : Random Forest with Multivariate Longitudinal Predictors (Version 1.2.0)
2022
E4tools : Management and Processing Tools for Data Produced by the Empatica E4 (Version 0.1.1)
2019
EBASE : Estuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism (Version 1.1.0)
2024
EFDR : Wavelet-Based Enhanced FDR for Detecting Signals from Complete or Incomplete Spatially Aggregated Data (Version 1.3)
2015
EGRET : Exploration and Graphics for RivEr Trends (Version 3.0.10)
2014
EGRETci : Exploration and Graphics for RivEr Trends Confidence Intervals (Version 2.0.4)
2015
ENMeval : Automated Tuning and Evaluations of Ecological Niche Models (Version 2.0.4)
2014
EPX : Ensemble of Phalanxes (Version 1.0.4)
2020
ESTER : Efficient Sequential Testing with Evidence Ratios (Version 0.2.0)
2017
EWSmethods : Forecasting Tipping Points at the Community Level (Version 1.3.1)
2023
EZtune : Tunes AdaBoost, Elastic Net, Support Vector Machines, and Gradient Boosting Machines (Version 3.1.1)
2018
EdSurvey : Analysis of NCES Education Survey and Assessment Data (Version 4.0.7)
2017
EmiStatR : Emissions and Statistics in R for Wastewater and Pollutants in Combined Sewer Systems (Version 1.2.3.0)
2016
EnsembleBase : Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling (Version 1.0.2)
2014
EpiModel : Mathematical Modeling of Infectious Disease Dynamics (Version 2.5.0)
2013
EpiSemble : Ensemble Based Machine Learning Approach for Predicting Methylation States (Version 0.1.1)
2022
EstimDiagnostics : Diagnostic Tools and Unit Tests for Statistical Estimators (Version 0.0.3)
2020
Euclimatch : Euclidean Climatch Algorithm (Version 1.0.2)
2023
ExpImage : Analysis of Images in Experiments (Version 0.10.1)
2021
ExtrPatt : Spatial Dependencies and Indices for Extremes (Version 0.1-4)
2023
ExtremalDep : Extremal Dependence Models (Version 0.0.4-4)
2019
FAVAR : Bayesian Analysis of a FAVAR Model (Version 0.1.3)
2022
FLORAL : Fit Log-Ratio Lasso Regression for Compositional Data (Version 0.3.0)
2023
FMM : Rhythmic Patterns Modeling by FMM Models (Version 0.3.1)
2021
FSelectorRcpp : 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support (Version 0.3.13)
2017
FairMclus : Clustering for Data with Sensitive Attribute (Version 2.2.1)
2021
FastStepGraph : A Fast Algorithm for Sparse Precision Matrix Estimation (Version 0.1.1)
2023
FixedPoint : Algorithms for Finding Fixed Point Vectors of Functions (Version 0.6.3)
2017
FuncNN : Functional Neural Networks (Version 1.0)
2020
FuzzyClass : Fuzzy and Non-Fuzzy Classifiers (Version 0.1.6)
2022
GA : Genetic Algorithms (Version 3.2.4)
2012
GAGBLUP : Genetic Algorithm Assisted Genomic Best Liner Unbiased Prediction (Version 1.0)
2023
GALLO : Genomic Annotation in Livestock for Positional Candidate LOci (Version 1.5)
2020
GAparsimony : Searching Parsimony Models with Genetic Algorithms (Version 0.9.5)
2017
GB5mcPred : Gradient Boosting Algorithm for Predicting Methylation States (Version 0.1.0)
2023
GENLIB : Genealogical Data Analysis (Version 1.1.10)
2014
GFDmcv : General Hypothesis Testing Problems for Multivariate Coefficients of Variation (Version 0.1.0)
2023
GGIR : Raw Accelerometer Data Analysis (Version 3.1-5)
2013
GGMnonreg : Non-Regularized Gaussian Graphical Models (Version 1.0.0)
2021
GGoutlieR : Identify Individuals with Unusual Geo-Genetic Patterns (Version 1.0.2)
2023
GPM : Gaussian Process Modeling of Multi-Response and Possibly Noisy Datasets (Version 3.0.1)
2018
GSEMA : Gene Set Enrichment Meta-Analysis (Version 0.99.3)
2024
GWEX : Multi-Site Stochastic Models for Daily Precipitation and Temperature (Version 1.1.3)
2019
GWLelast : Geographically Weighted Logistic Elastic Net Regression (Version 1.2.2)
2015
GWRM : Generalized Waring Regression Model for Count Data (Version 2.1.0.4)
2010
GWpcor : Geographically Weighted Partial Correlation Coefficient (Version 0.1.7)
2020
GaussianHMM1d : Inference, Goodness-of-Fit and Forecast for Univariate Gaussian Hidden Markov Models (Version 1.1.1)
2019
GeDS : Geometrically Designed Spline Regression (Version 0.2.4)
2017
GenoPop : Genotype Imputation and Population Genomics Efficiently from Variant Call Formatted (VCF) Files (Version 1.0.0)
2024
GenoTriplo : Genotyping Triploids (or Diploids) from Luminescence Data (Version 1.1.2)
2023
GeomArchetypal : Finds the Geometrical Archetypal Analysis of a Data Frame (Version 1.0.3)
2024
GiNA : High Throughput Phenotyping (Version 1.0.1)
2016
HDCI : High Dimensional Confidence Interval Based on Lasso and Bootstrap (Version 1.0-2)
2017
HEMDAG : Hierarchical Ensemble Methods for Directed Acyclic Graphs (Version 2.7.4)
2017
HIMA : High-Dimensional Mediation Analysis (Version 2.3.0)
2017
HMMcopula : Markov Regime Switching Copula Models Estimation and Goodness-of-Fit (Version 1.1.0)
2018
HMP : Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP (Version 2.0.1)
2011
HMPTrees : Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data (Version 1.4)
2011
HaploCatcher : A Predictive Haplotyping Package (Version 1.0.4)
2023
HextractoR : Integrated Tool for Hairping Extraction of RNA Sequences (Version 1.4)
2018
IDSpatialStats : Estimate Global Clustering in Infectious Disease (Version 0.4.0)
2016
IDmining : Intrinsic Dimension for Data Mining (Version 1.0.7)
2016
IETD : Inter-Event Time Definition (Version 1.0.0)
2020
IceSat2R : ICESat-2 Altimeter Data using R (Version 1.0.6)
2022
Information : Data Exploration with Information Theory (Weight-of-Evidence and Information Value) (Version 0.0.9)
2015
InteractionPoweR : Power Analyses for Interaction Effects in Cross-Sectional Regressions (Version 0.2.2)
2022
Interatrix : Compute Chi-Square Measures with Corrections (Version 1.1.4)
2015
InterpretMSSpectrum : Interpreting High Resolution Mass Spectra (Version 1.4.5)
2016
JMbayes : Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach (Version 0.8-85)
2012
JOUSBoost : Implements Under/Oversampling for Probability Estimation (Version 2.1.0)
2016
KScorrect : Lilliefors-Corrected Kolmogorov-Smirnov Goodness-of-Fit Tests (Version 1.4.0)
2016
Kmedians : K-Medians (Version 2.2.0)
2022
LCAvarsel : Variable Selection for Latent Class Analysis (Version 1.1)
2017
LMMstar : Repeated Measurement Models for Discrete Times (Version 1.1.0)
2021
LOMAR : Localization Microscopy Data Analysis (Version 0.5.0)
2021
LSEbootLS : Bootstrap Methods for Regression Models with Locally Stationary Errors (Version 0.1.0)
2024
LeArEst : Border and Area Estimation of Data Measured with Additive Error (Version 1.0.0)
2017
LipidMS : Lipid Annotation for LC-MS/MS DDA or DIA Data (Version 3.0.5)
2018
LorenzRegression : Lorenz and Penalized Lorenz Regressions (Version 2.1.0)
2023
MAGMA.R : MAny-Group MAtching (Version 1.0.3)
2024
MAGNAMWAR : A Pipeline for Meta-Genome Wide Association (Version 2.0.4)
2017
MAPITR : MArginal ePIstasis Test for Regions (Version 1.1.2)
2020
MAZE : Mediation Analysis for Zero-Inflated Mediators (Version 0.0.2)
2023
MCPModBC : Improved Inference in Multiple Comparison Procedure – Modelling (Version 1.1)
2023
MCPtests : Multiples Comparisons Procedures (Version 1.0.1)
2020
MDBED : Moran-Downton Bivariate Exponential Distribution (Version 1.0.0)
2020
MDDC : Modified Detecting Deviating Cells Algorithm in Pharmacovigilance (Version 1.0.0)
2024
MEGENA : Multiscale Clustering of Geometrical Network (Version 1.3.7)
2016
MERO : Performing Monte Carlo Expectation Maximization Random Forest Imputation for Biological Data (Version 0.1.2)
2022
MFSIS : Model-Free Sure Independent Screening Procedures (Version 0.2.1)
2021
MG1StationaryProbability : Computes Stationary Distribution for M/G/1 Queuing System (Version 0.1.2)
2023
MKclass : Statistical Classification (Version 0.5)
2020
MKmisc : Miscellaneous Functions from M. Kohl (Version 1.9)
2008
ML.MSBD : Maximum Likelihood Inference on Multi-State Trees (Version 1.2.1)
2017
MNS : Mixed Neighbourhood Selection (Version 1.0)
2015
MPI : Computation of Multidimensional Poverty Index (MPI) (Version 0.1.0)
2022
MSCquartets : Analyzing Gene Tree Quartets under the Multi-Species Coalescent (Version 3.0)
2019
MSPRT : A Modified Sequential Probability Ratio Test (MSPRT) (Version 3.0)
2018
MSinference : Multiscale Inference for Nonparametric Time Trend(s) (Version 0.2.1)
2023
MSmix : Finite Mixtures of Mallows Models with Spearman Distance for Full and Partial Rankings (Version 1.0.2)
2024
MUVR2 : Multivariate Methods with Unbiased Variable Selection (Version 0.1.0)
2024
MachineShop : Machine Learning Models and Tools (Version 3.8.0)
2018
MarZIC : Marginal Mediation Effects with Zero-Inflated Compositional Mediator (Version 1.0.0)
2023
MarketMatching : Market Matching and Causal Impact Inference (Version 1.2.1)
2018
Markovchart : Markov Chain-Based Cost-Optimal Control Charts (Version 2.1.5)
2020
Mediana : Clinical Trial Simulations (Version 1.0.8)
2015
MedianaDesigner : Power and Sample Size Calculations for Clinical Trials (Version 0.13)
2021
MixRF : A Random-Forest-Based Approach for Imputing Clustered Incomplete Data (Version 1.0)
2016
MixedIndTests : Tests of Randomness and Tests of Independence (Version 1.2.0)
2021
MoBPS : Modular Breeding Program Simulator (Version 1.6.64)
2020
MonoInc : Monotonic Increasing (Version 1.1)
2016
Morpho : Calculations and Visualisations Related to Geometric Morphometrics (Version 2.12)
2013
NAP : Non-Local Alternative Priors in Psychology (Version 1.1)
2021
NCA : Necessary Condition Analysis (Version 4.0.2)
2015
NCC : Simulation and Analysis of Platform Trials with Non-Concurrent Controls (Version 1.0)
2023
NMF : Algorithms and Framework for Nonnegative Matrix Factorization (NMF) (Version 0.28)
2009
NNS : Nonlinear Nonparametric Statistics (Version 10.9.6)
2016
NPflow : Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data (Version 0.13.5)
2016
NRejections : Metrics for Multiple Testing with Correlated Outcomes (Version 1.2.0)
2018
NetFACS : Network Applications to Facial Communication Data (Version 0.5.0)
2021
NetworkDistance : Distance Measures for Networks (Version 0.3.4)
2017
NetworkExtinction : Extinction Simulation in Ecological Networks (Version 1.0.3)
2018
NetworkToolbox : Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis (Version 1.4.2)
2017
NonParRolCor : a Non-Parametric Statistical Significance Test for Rolling Window Correlation (Version 0.8.0)
2021
ODRF : Oblique Decision Random Forest for Classification and Regression (Version 0.0.4)
2023
ORION : Ordinal Relations (Version 1.0.3)
2020
OmicKriging : Poly-Omic Prediction of Complex TRaits (Version 1.4.0)
2013
PAsso : Assessing the Partial Association Between Ordinal Variables (Version 0.1.10)
2020
PINSPlus : Clustering Algorithm for Data Integration and Disease Subtyping (Version 2.0.7)
2018
PLMIX : Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for Partial Rankings/Orderings (Version 2.1.1)
2016
PNAR : Poisson Network Autoregressive Models (Version 1.7)
2022
POUMM : The Phylogenetic Ornstein-Uhlenbeck Mixed Model (Version 2.1.7)
2017
PPforest : Projection Pursuit Classification Forest (Version 0.1.3)
2017
PQLseq : Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies (Version 1.2.1)
2018
PTE : Personalized Treatment Evaluator (Version 1.7)
2014
PUGMM : Parsimonious Ultrametric Gaussian Mixture Models (Version 0.1.0)
2024
PUlasso : High-Dimensional Variable Selection with Presence-Only Data (Version 3.2.5)
2017
PanelMatch : Matching Methods for Causal Inference with Time-Series Cross-Sectional Data (Version 2.2.0)
2020
ParBayesianOptimization : Parallel Bayesian Optimization of Hyperparameters (Version 1.2.6)
2018
ParetoPosStable : Computing, Fitting and Validating the PPS Distribution (Version 1.1)
2014
PartialNetwork : Estimating Peer Effects Using Partial Network Data (Version 1.0.4)
2023
PhylogeneticEM : Automatic Shift Detection using a Phylogenetic EM (Version 1.7.0)
2017
Platypus : Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)
2021
ProcMod : Informative Procrustean Matrix Correlation (Version 1.0.8)
2019
QTL.gCIMapping.GUI : QTL Genome-Wide Composite Interval Mapping with Graphical User Interface (Version 2.1.1)
2018
QTL.gCIMapping : QTL Genome-Wide Composite Interval Mapping (Version 3.4)
2018
QuadratiK : Collection of Methods Constructed using Kernel-Based Quadratic Distances (Version 1.1.2)
2024
QurvE : Robust and User-Friendly Analysis of Growth and Fluorescence Curves (Version 1.1.1)
2023
R2BEAT : Multistage Sampling Allocation and Sample Selection (Version 1.0.5)
2019
R2MLwiN : Running 'MLwiN' from Within R (Version 0.8-9)
2012
RABR : Simulations for Response Adaptive Block Randomization Design (Version 0.1.1)
2021
RAINBOWR : Genome-Wide Association Study with SNP-Set Methods (Version 0.1.35)
2019
RCNA : Robust Copy Number Alteration Detection (RCNA) (Version 1.0)
2024
RCTS : Clustering Time Series While Resisting Outliers (Version 0.2.4)
2022
REN : Regularization Ensemble for Robust Portfolio Optimization (Version 0.1.0)
2024
REPTILE : Regulatory DNA Element Prediction (Version 1.0)
2016
RGBM : LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network Reconstruction (Version 1.0-11)
2017
RGMM : Robust Mixture Model (Version 2.1.0)
2022
RHRV : Heart Rate Variability Analysis of ECG Data (Version 5.0.0)
2008
RHybridFinder : Identification of Hybrid Peptides in Immunopeptidomic Analyses (Version 0.2.0)
2021
RISCA : Causal Inference and Prediction in Cohort-Based Analyses (Version 1.0.5)
2019
RKEEL : Using 'KEEL' in R Code (Version 1.3.4)
2016
RLumCarlo : Monte-Carlo Methods for Simulating Luminescence Phenomena (Version 0.1.9)
2020
RMSDp : Refined Modified Stahel-Donoho (MSD) Estimators for Outlier Detection (Parallel Version) (Version 0.1.1)
2023
RMTL : Regularized Multi-Task Learning (Version 0.9.9)
2019
RMediation : Mediation Analysis Confidence Intervals (Version 1.2.2)
2011
RMixtCompIO : Minimal Interface of the C++ 'MixtComp' Library for Mixture Models with Heterogeneous and (Partially) Missing Data (Version 4.0.11)
2019
RNAmf : Recursive Non-Additive Emulator for Multi-Fidelity Data (Version 1.0.0)
2023
ROptimus : A Parallel General-Purpose Adaptive Optimisation Engine (Version 3.0.0)
2023
RPDTest : A New Type of Test Statistic and Method for Multinomial Goodness-of-Fit Test (Version 0.0.2)
2023
RPPASPACE : Reverse-Phase Protein Array Super Position and Concentration Evaluation (Version 1.0.10)
2020
RRphylo : Phylogenetic Ridge Regression Methods for Comparative Studies (Version 2.8.1)
2018
RRreg : Correlation and Regression Analyses for Randomized Response Data (Version 0.7.5)
2014
RSC : Robust and Sparse Correlation Matrix (Version 2.0.4)
2020
RZooRoH : Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes (Version 0.3.2.1)
2018
RaJIVE : Robust Angle Based Joint and Individual Variation Explained (Version 1.0)
2021
RaSEn : Random Subspace Ensemble Classification and Variable Screening (Version 3.0.0)
2020
Rcrawler : Web Crawler and Scraper (Version 0.1.9-1)
2017
ReIns : Functions from "Reinsurance: Actuarial and Statistical Aspects" (Version 1.0.15)
2016
Rlgt : Bayesian Exponential Smoothing Models with Trend Modifications (Version 0.2-2)
2019
Rlof : R Parallel Implementation of Local Outlier Factor(LOF) (Version 1.1.3)
2011
Rnmr1D : Perform the Complete Processing of a Set of Proton Nuclear Magnetic Resonance Spectra (Version 1.3.2)
2018
RobGARCHBoot : Robust Bootstrap Forecast Densities for GARCH Models (Version 1.2.0)
2019
RobRegression : Robust Multivariate Regression (Version 0.1.0)
2024
Robyn : Semi-Automated Marketing Mix Modeling (MMM) from Meta Marketing Science (Version 3.11.1)
2022
RootsExtremaInflections : Finds Roots, Extrema and Inflection Points of a Curve (Version 1.2.1)
2014
Rrepest : An Analyzer of International Large Scale Assessments in Education (Version 1.3.0)
2023
SAMGEP : A Semi-Supervised Method for Prediction of Phenotype Event Times (Version 0.1.0-1)
2021
SAVER : Single-Cell RNA-Seq Gene Expression Recovery (Version 1.1.2)
2018
SAiVE : Functions Used for SAiVE Group Research, Collaborations, and Publications (Version 1.0.6)
2024
SCOR : Spherically Constrained Optimization Routine (Version 1.1.2)
2019
SCORNET : Semi-Supervised Calibration of Risk with Noisy Event Times (Version 0.1.1)
2020
SEA : Segregation Analysis (Version 2.0.1)
2018
SFtools : Space Filling Based Tools for Data Mining (Version 0.1.0)
2017
SGP : Student Growth Percentiles & Percentile Growth Trajectories (Version 2.2-0.0)
2008
SIBERG : Systematic Identification of Bimodally Expressed Genes Using RNAseq Data (Version 2.0.3)
2017
SIDES : Subgroup Identification Based on Differential Effect Search (Version 1.18)
2016
SIMMS : Subnetwork Integration for Multi-Modal Signatures (Version 1.3.2)
2013
SISIR : Select Intervals Suited for Functional Regression (Version 0.2.3)
2016
SLEMI : Statistical Learning Based Estimation of Mutual Information (Version 1.0.2)
2019
SNPannotator : Investigating the Functional Characteristics of Selected SNPs and Their Vicinity Genomic Region (Version 0.2.6.0)
2022
SNPknock : Knockoffs for Hidden Markov Models and Genetic Data (Version 0.8.2)
2017
SSDM : Stacked Species Distribution Modelling (Version 0.2.9)
2016
SSLR : Semi-Supervised Classification, Regression and Clustering Methods (Version 0.9.3.3)
2020
SVEMnet : Self-Validated Ensemble Models with Elastic Net Regression (Version 1.3.0)
2024
SamplingStrata : Optimal Stratification of Sampling Frames for Multipurpose Sampling Surveys (Version 1.5-4)
2011
SemiPar.depCens : Copula Based Cox Proportional Hazards Models for Dependent Censoring (Version 0.1.3)
2024
SeqExpMatch : Sequential Experimental Design via Matching on-the-Fly (Version 0.1.0)
2021
SeqKat : Detection of Kataegis (Version 0.0.8)
2017
SharkDemography : Shark Demographic Analyses Using Leslie Matrix Models (Version 1.1.0)
2023
SimSurvey : Test Surveys by Simulating Spatially-Correlated Populations (Version 0.1.6)
2020
SpaTopic : Topic Inference to Identify Tissue Architecture in Multiplexed Images (Version 1.1.0)
2024
SparseMDC : Implementation of SparseMDC Algorithm (Version 0.99.5)
2018
SpatialPosition : Spatial Position Models (Version 2.1.2)
2015
SpeTestNP : Non-Parametric Tests of Parametric Specifications (Version 1.1.0)
2022
SpiceFP : Sparse Method to Identify Joint Effects of Functional Predictors (Version 0.1.2)
2021
Sstack : Bootstrap Stacking of Random Forest Models for Heterogeneous Data (Version 1.0.1)
2018
StAMPP : Statistical Analysis of Mixed Ploidy Populations (Version 1.6.3)
2013
StochBlock : Stochastic Blockmodeling of One-Mode and Linked Networks (Version 0.1.2)
2023
SuRF.vs : Subsampling Ranking Forward Selection (SuRF) (Version 1.1.0.1)
2022
TCIU : Spacekime Analytics, Time Complexity and Inferential Uncertainty (Version 1.2.7)
2020
TDApplied : Machine Learning and Inference for Topological Data Analysis (Version 3.0.4)
2022
TGS : Rapid Reconstruction of Time-Varying Gene Regulatory Networks (Version 1.0.1)
2018
TRexSelector : T-Rex Selector: High-Dimensional Variable Selection & FDR Control (Version 1.0.0)
2022
TSP : Traveling Salesperson Problem (TSP) (Version 1.2-4)
2006
TcGSA : Time-Course Gene Set Analysis (Version 0.12.10)
2014
TempStable : A Collection of Methods to Estimate Parameters of Different Tempered Stable Distributions (Version 0.2.2)
2023
TextForecast : Regression Analysis and Forecasting Using Textual Data from a Time-Varying Dictionary (Version 0.1.3)
2019
TopKSignal : A Convex Optimization Tool for Signal Reconstruction from Multiple Ranked Lists (Version 1.0)
2024
TraMineRextras : TraMineR Extension (Version 0.6.8)
2012
TransGraph : Transfer Graph Learning (Version 1.0.1)
2023
TransTGGM : Transfer Learning for Tensor Graphical Models (Version 1.0.0)
2022
TriadSim : Simulating Triad Genomewide Genotypes (Version 0.3.0)
2017
TropFishR : Tropical Fisheries Analysis (Version 1.6.5)
2016
VIC5 : The Variable Infiltration Capacity (VIC) Hydrological Model (Version 0.2.6)
2021
VICatMix : Variational Mixture Models for Clustering Categorical Data (Version 1.0)
2024
VSURF : Variable Selection Using Random Forests (Version 1.2.0)
2013
VUROCS : Volume under the ROC Surface for Multi-Class ROC Analysis (Version 1.0)
2020
VertexWiseR : Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal Surface (Version 1.2.0)
2024
WGCNA : Weighted Correlation Network Analysis (Version 1.73)
2010
WRTDStidal : Weighted Regression for Water Quality Evaluation in Tidal Waters (Version 1.1.4)
2016
WebGestaltR : Gene Set Analysis Toolkit WebGestaltR (Version 0.4.6)
2017
ZIPFA : Zero Inflated Poisson Factor Analysis (Version 0.8.1)
2019
ZLAvian : Zipf's Law of Abbreviation in Animal Vocalisations (Version 0.2.0)
2023
abcrf : Approximate Bayesian Computation via Random Forests (Version 1.9)
2015
abn : Modelling Multivariate Data with Additive Bayesian Networks (Version 3.1.1)
2011
adabag : Applies Multiclass AdaBoost.M1, SAMME and Bagging (Version 5.0)
2006
adamethods : Archetypoid Algorithms and Anomaly Detection (Version 1.2.1)
2018
adapt4pv : Adaptive Approaches for Signal Detection in Pharmacovigilance (Version 0.2-3)
2020
adaptDiag : Bayesian Adaptive Designs for Diagnostic Trials (Version 0.1.0)
2021
ade4 : Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences (Version 1.7-22)
2002
adjustedCurves : Confounder-Adjusted Survival Curves and Cumulative Incidence Functions (Version 0.11.2)
2022
admix : Package Admix for Admixture (aka Contamination) Models (Version 2.3.3)
2021
ag5Tools : Toolbox for Downloading and Extracting Copernicus AgERA5 Data (Version 0.0.2)
2022
aifeducation : Artificial Intelligence for Education (Version 1.0.0)
2023
aihuman : Experimental Evaluation of Algorithm-Assisted Human Decision-Making (Version 0.1.0)
2023
aliases2entrez : Converts Human gene symbols to entrez IDs (Version 0.1.2)
2019
antaresEditObject : Edit an 'Antares' Simulation (Version 0.7.1)
2018
antaresRead : Import, Manipulate and Explore the Results of an 'Antares' Simulation (Version 2.7.2)
2017
archetypal : Finds the Archetypal Analysis of a Data Frame (Version 1.3.1)
2019
arf : Adversarial Random Forests (Version 0.2.0)
2022
ashapesampler : Generating Alpha Shapes (Version 1.0.0)
2024
asremlPlus : Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction Differences (Version 4.4.43)
2015
assignPOP : Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework (Version 1.3.0)
2016
astrochron : A Computational Tool for Astrochronology (Version 1.4)
2014
autoRasch : Semi-Automated Rasch Analysis (Version 0.2.2)
2022
autoMrP : Improving MrP with Ensemble Learning (Version 1.0.6)
2021
autohrf : Automated Generation of Data-Informed GLM Models in Task-Based fMRI Data Analysis (Version 1.1.3)
2022
autostats : Auto Stats (Version 0.4.1)
2021
avotrex : A Global Dataset of Anthropogenic Extinct Birds and their Traits: Phylogeny Builder (Version 1.3.0)
2024
baclava : Bayesian Analysis of Cancer Latency with Auxiliary Variable Augmentation (Version 1.0)
2024
baggingbwsel : Bagging Bandwidth Selection in Kernel Density and Regression Estimation (Version 1.1)
2021
basket : Basket Trial Analysis (Version 0.10.11)
2019
batchtools : Tools for Computation on Batch Systems (Version 0.9.17)
2016
bayesCureRateModel : Bayesian Cure Rate Modeling for Time-to-Event Data (Version 1.3)
2024
bayesboot : An Implementation of Rubin's (1981) Bayesian Bootstrap (Version 0.2.2)
2016
bayesreg : Bayesian Regression Models with Global-Local Shrinkage Priors (Version 1.3)
2016
bcf : Causal Inference using Bayesian Causal Forests (Version 2.0.2)
2018
bdc : Biodiversity Data Cleaning (Version 1.1.5)
2022
benchmarkme : Crowd Sourced System Benchmarks (Version 1.0.8)
2016
bestNormalize : Normalizing Transformation Functions (Version 1.9.1)
2017
betaclust : A Family of Beta Mixture Models for Clustering Beta-Valued DNA Methylation Data (Version 1.0.4)
2022
biclustermd : Biclustering with Missing Data (Version 0.2.3)
2019
bigDM : Scalable Bayesian Disease Mapping Models for High-Dimensional Data (Version 0.5.5)
2022
bigSurvSGD : Big Survival Analysis Using Stochastic Gradient Descent (Version 0.0.1)
2020
bigparallelr : Easy Parallel Tools (Version 0.3.2)
2019
bingat : Binary Graph Analysis Tools (Version 1.3)
2014
biopixR : Extracting Insights from Biological Images (Version 1.2.0)
2024
biomod2 : Ensemble Platform for Species Distribution Modeling (Version 4.2-5-2)
2012
blockmodeling : Generalized and Classical Blockmodeling of Valued Networks (Version 1.1.5)
2008
bootPLS : Bootstrap Hyperparameter Selection for PLS Models and Extensions (Version 1.0.1)
2021
bootcluster : Bootstrapping Estimates of Clustering Stability (Version 0.4.1)
2017
brada : Bayesian Response-Adaptive Design Analysis (Version 1.0)
2023
brainGraph : Graph Theory Analysis of Brain MRI Data (Version 3.1.0)
2015
breakpoint : An R Package for Multiple Break-Point Detection via the Cross-Entropy Method (Version 1.2)
2014
bst : Gradient Boosting (Version 0.3-24)
2011
bstrl : Bayesian Streaming Record Linkage (Version 1.0.2)
2022
cape : Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice (Version 3.1.2)
2013
catlearn : Formal Psychological Models of Categorization and Learning (Version 1.0)
2016
cats : Cohort Platform Trial Simulation (Version 1.0.2)
2022
cauchypca : Robust Principal Component Analysis Using the Cauchy Distribution (Version 1.3)
2022
cauphy : Trait Evolution on Phylogenies Using the Cauchy Process (Version 1.0.3)
2023
causalCmprsk : Nonparametric and Cox-Based Estimation of Average Treatment Effects in Competing Risks (Version 2.0.0)
2020
cemco : Fit 'CemCO' Algorithm (Version 0.2)
2020
cffdrs : Canadian Forest Fire Danger Rating System (Version 1.9.0)
2015
cgaim : Constrained Groupwise Additive Index Models (Version 1.0.1)
2022
changepointTests : Change Point Tests for Joint Distributions and Copulas (Version 0.1.7)
2021
chicane : Capture Hi-C Analysis Engine (Version 0.1.8)
2018
cia : Learn and Apply Directed Acyclic Graphs for Causal Inference (Version 1.0.0)
2024
circularEV : Extreme Value Analysis for Circular Data (Version 0.1.1)
2021
clespr : Composite Likelihood Estimation for Spatial Data (Version 1.1.2)
2018
clinDR : Simulation and Analysis Tools for Clinical Dose Response Modeling (Version 2.4.1)
2017
clordr : Composite Likelihood Inference and Diagnostics for Replicated Spatial Ordinal Data (Version 1.7.0)
2018
clustcurv : Determining Groups in Multiples Curves (Version 2.0.2)
2019
clustvarsel : Variable Selection for Gaussian Model-Based Clustering (Version 2.3.4)
2006
colocalized : Clusters of Colocalized Sequences (Version 0.2.0)
2019
conStruct : Models Spatially Continuous and Discrete Population Genetic Structure (Version 1.0.6)
2018
condSURV : Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data (Version 2.0.4)
2016
confintROB : Confidence Intervals for Robust and Classical Linear Mixed Model Estimators (Version 1.0-1)
2024
conformalClassification : Transductive and Inductive Conformal Predictions for Classification Problems (Version 1.0.0)
2017
conleyreg : Estimations using Conley Standard Errors (Version 0.1.7)
2021
contsurvplot : Visualize the Effect of a Continuous Variable on a Time-to-Event Outcome (Version 0.2.1)
2022
copyseparator : Assembling Long Gene Copies from Short Read Data (Version 1.2.0)
2022
corr2D : Implementation of 2D Correlation Analysis in R (Version 1.0.3)
2016
covdepGE : Covariate Dependent Graph Estimation (Version 1.0.1)
2022
cpfa : Classification with Parallel Factor Analysis (Version 1.1-6)
2022
cpi : Conditional Predictive Impact (Version 0.1.5)
2022
cpmBigData : Fitting Semiparametric Cumulative Probability Models for Big Data (Version 0.0.1)
2023
creditmodel : Toolkit for Credit Modeling, Analysis and Visualization (Version 1.3.1)
2019
crosstalkr : Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks (Version 1.0.5)
2021
csa : A Cross-Scale Analysis Tool for Model-Observation Visualization and Integration (Version 0.7.1)
2020
cutpointr : Determine and Evaluate Optimal Cutpoints in Binary Classification Tasks (Version 1.2.0)
2018
cv : Cross-Validating Regression Models (Version 2.0.3)
2023
cvwrapr : Tools for Cross Validation (Version 1.0)
2021
cytominer : Methods for Image-Based Cell Profiling (Version 0.2.2)
2017
dCovTS : Distance Covariance and Correlation for Time Series Analysis (Version 1.4)
2016
dMod : Dynamic Modeling and Parameter Estimation in ODE Models (Version 1.0.2)
2015
dQTG.seq : A BSA Software for Detecting All Types of QTLs in BC, DH, RIL and F2 (Version 1.0.2)
2022
dartR.base : Analysing 'SNP' and 'Silicodart' Data - Basic Functions (Version 0.98)
2023
dartR.sexlinked : Analysing SNP Data to Identify Sex-Linked Markers (Version 1.0.5)
2024
dartR : Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.7)
2017
data.tree : General Purpose Hierarchical Data Structure (Version 1.1.0)
2015
datafsm : Estimating Finite State Machine Models from Data (Version 0.2.4)
2015
dataprep : Efficient and Flexible Data Preprocessing Tools (Version 0.1.5)
2021
ddsPLS : Data-Driven Sparse Partial Least Squares (Version 1.2.1)
2018
deepgp : Bayesian Deep Gaussian Processes using MCMC (Version 1.1.3)
2020
deltaccd : Quantify Rhythmic Gene Co-Expression Relative to a Reference (Version 1.0.2)
2022
dendroNetwork : Create Networks of Dendrochronological Series using Pairwise Similarity (Version 0.5.4)
2024
depCensoring : Statistical Methods for Survival Data with Dependent Censoring (Version 0.1.5)
2024
detectR : Change Point Detection (Version 0.3.0)
2021
detrendr : Detrend Images (Version 0.6.15)
2017
diagL1 : Routines for Fit, Inference and Diagnostics in Linear L1 and LAD Models (Version 1.0.0)
2023
dispositionEffect : Analysis of Disposition Effect on Financial Portfolios (Version 1.0.1)
2021
distantia : Assessing Dissimilarity Between Multivariate Time Series (Version 1.0.2)
2019
doRNG : Generic Reproducible Parallel Backend for 'foreach' Loops (Version 1.8.6)
2011
drimmR : Estimation, Simulation and Reliability of Drifting Markov Models (Version 1.0.1)
2021
drugdevelopR : Utility-Based Optimal Phase II/III Drug Development Planning (Version 1.0.1)
2024
drugDemand : Drug Demand Forecasting (Version 0.1.3)
2023
dtwclust : Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance (Version 6.0.0)
2015
dynamAedes : A Unified Mechanistic Model for the Population Dynamics of Invasive Aedes Mosquitoes (Version 2.2.9)
2022
dynetNLAResistance : Resisting Neighbor Label Attack in a Dynamic Network (Version 0.1.0)
2016
eNchange : Ensemble Methods for Multiple Change-Point Detection (Version 1.0)
2020
earlygating : Properties of Bayesian Early Gating Designs (Version 1.1)
2018
easy.glmnet : Functions to Simplify the Use of 'glmnet' for Machine Learning (Version 1.0)
2024
ecoCopula : Graphical Modelling and Ordination using Copulas (Version 1.0.2)
2020
ecocbo : Calculating Optimum Sampling Effort in Community Ecology (Version 0.12.0)
2023
econet : Estimation of Parameter-Dependent Network Centrality Measures (Version 1.0.0.1)
2018
ecpc : Flexible Co-Data Learning for High-Dimensional Prediction (Version 3.1.1)
2021
ellipticalsymmetry : Elliptical Symmetry Tests (Version 0.1.2)
2020
enmSdmX : Species Distribution Modeling and Ecological Niche Modeling (Version 1.2.10)
2022
enpls : Ensemble Partial Least Squares Regression (Version 6.1)
2014
epizootic : Spatially Explicit Population Models of Disease Transmission in Wildlife (Version 1.0.0)
2024
esaddle : Extended Empirical Saddlepoint Density Approximations (Version 0.0.7)
2016
evapoRe : Evapotranspiration R Recipes (Version 1.0.0)
2023
evalITR : Evaluating Individualized Treatment Rules (Version 1.0.0)
2020
evian : Evidential Analysis of Genetic Association Data (Version 2.1.0)
2018
evinf : Inference with Extreme Value Inflated Count Data (Version 0.8.10)
2023
evolqg : Evolutionary Quantitative Genetics (Version 0.3-4)
2015
ewoc : Escalation with Overdose Control (Version 0.3.0)
2017
extBatchMarking : Extended Batch Marking Models (Version 1.1.0)
2023
fDMA : Dynamic Model Averaging and Dynamic Model Selection for Continuous Outcomes (Version 2.2.7)
2017
fabMix : Overfitting Bayesian Mixtures of Factor Analyzers with Parsimonious Covariance and Unknown Number of Components (Version 5.1)
2018
fabisearch : Change Point Detection in High-Dimensional Time Series Networks (Version 0.0.4.5)
2021
fastLink : Fast Probabilistic Record Linkage with Missing Data (Version 0.6.1)
2017
fastnet : Large-Scale Social Network Analysis (Version 1.0.0)
2016
fdANOVA : Analysis of Variance for Univariate and Multivariate Functional Data (Version 0.1.2)
2017
fda.usc : Functional Data Analysis and Utilities for Statistical Computing (Version 2.2.0)
2011
fdaMocca : Model-Based Clustering for Functional Data with Covariates (Version 0.1-1)
2021
fdaSP : Sparse Functional Data Analysis Methods (Version 1.1.1)
2023
fdasrvf : Elastic Functional Data Analysis (Version 2.3.4)
2012
fect : Fixed Effects Counterfactuals (Version 1.0.0)
2022
fiberLD : Fiber Length Determination (Version 0.1-8)
2019
finnts : Microsoft Finance Time Series Forecasting Framework (Version 0.5.0)
2022
fitPS : Fit Zeta Distributions to Forensic Data (Version 1.0.1)
2022
fitPoly : Genotype Calling for Bi-Allelic Marker Assays (Version 3.0.0)
2018
flintyR : Simple and Flexible Tests of Sample Exchangeability (Version 0.1.0)
2021
fnets : Factor-Adjusted Network Estimation and Forecasting for High-Dimensional Time Series (Version 0.1.6)
2023
foreach : Provides Foreach Looping Construct (Version 1.5.2)
2009
forecastHybrid : Convenient Functions for Ensemble Time Series Forecasts (Version 5.0.19)
2016
forensIT : Information Theory Tools for Forensic Analysis (Version 1.0.0)
2023
fsemipar : Estimation, Variable Selection and Prediction for Functional Semiparametric Models (Version 1.1.1)
2023
fuzzyforest : Fuzzy Forests (Version 1.0.8)
2016
gamCopula : Generalized Additive Models for Bivariate Conditional Dependence Structures and Vine Copulas (Version 0.0-7)
2017
gambin : Fit the Gambin Model to Species Abundance Distributions (Version 2.5.0)
2013
gamlss.foreach : Parallel Computations for Distributional Regression (Version 1.1-6)
2021
gamreg : Robust and Sparse Regression via Gamma-Divergence (Version 0.3)
2016
gapclosing : Estimate Gaps Under an Intervention (Version 1.0.2)
2021
gapfill : Fill Missing Values in Satellite Data (Version 0.9.6-1)
2016
gbts : Hyperparameter Search for Gradient Boosted Trees (Version 1.2.0)
2016
gdpc : Generalized Dynamic Principal Components (Version 1.1.4)
2016
gdm : Generalized Dissimilarity Modeling (Version 1.6.0-4)
2015
geeVerse : A Comprehensive Analysis of High Dimensional Longitudinal Data (Version 0.2.2)
2024
genlogis : Generalized Logistic Distribution (Version 1.0.2)
2017
geoTS : Methods for Handling and Analyzing Time Series of Satellite Images (Version 0.1.8)
2020
gestate : Generalised Survival Trial Assessment Tool Environment (Version 1.6.0)
2019
gfiExtremes : Generalized Fiducial Inference for Extremes (Version 1.0.1)
2020
gfoRmulaICE : Parametric Iterative Conditional Expectation G-Formula (Version 0.1.0)
2024
ggroups : Pedigree and Genetic Groups (Version 2.1.2)
2019
glmm : Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation (Version 1.4.5)
2015
glmnetUtils : Utilities for 'Glmnet' (Version 1.1.9)
2017
glmtlp : Generalized Linear Models with Truncated Lasso Penalty (Version 2.0.2)
2018
glmtrans : Transfer Learning under Regularized Generalized Linear Models (Version 2.0.0)
2021
gmtFD : General Multiple Tests for Univariate and Multivariate Functional Data (Version 0.1.0)
2024
graDiEnt : Stochastic Quasi-Gradient Differential Evolution Optimization (Version 1.0.1)
2022
graphicalEvidence : Graphical Evidence (Version 1.1)
2024
greybox : Toolbox for Model Building and Forecasting (Version 2.0.3)
2018
groupedSurv : Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function (Version 1.0.5.1)
2018
growthcleanr : Data Cleaner for Anthropometric Measurements (Version 2.2.0)
2022
gsbm : Estimate Parameters in the Generalized SBM (Version 0.2.2)
2020
gsrs : A Group-Specific Recommendation System (Version 0.1.1)
2021
gsynth : Generalized Synthetic Control Method (Version 1.2.1)
2017
handwriter : Handwriting Analysis in R (Version 3.2.3)
2021
hdbinseg : Change-Point Analysis of High-Dimensional Time Series via Binary Segmentation (Version 1.0.2)
2018
hdcuremodels : Penalized Mixture Cure Models for High-Dimensional Data (Version 0.0.1)
2024
hdnom : Benchmarking and Visualization Toolkit for Penalized Cox Models (Version 6.0.4)
2015
heatwaveR : Detect Heatwaves and Cold-Spells (Version 0.4.6)
2018
hettx : Fisherian and Neymanian Methods for Detecting and Measuring Treatment Effect Variation (Version 0.1.3)
2019
highd2means : High-Dimensional Tests for Two Population Mean Vectors (Version 1.0)
2024
hlt : Higher-Order Item Response Theory (Version 1.3.1)
2022
hmsr : Multipopulation Evolutionary Strategy HMS (Version 1.0.1)
2023
hsrecombi : Estimation of Recombination Rate and Maternal LD in Half-Sibs (Version 1.0.1)
2020
hybridModels : An R Package for the Stochastic Simulation of Disease Spreading in Dynamic Networks (Version 0.3.7)
2016
hyperbolicDEA : Hyperbolic DEA Estimation (Version 1.0.2)
2024
hypervolume : High Dimensional Geometry, Set Operations, Projection, and Inference Using Kernel Density Estimation, Support Vector Machines, and Convex Hulls (Version 3.1.4)
2013
iIneq : Computing Individual Components of the Gini and the Theil Indices (Version 1.0.2)
2020
iZID : Identify Zero-Inflated Distributions (Version 0.0.1)
2019
icardaFIGSr : Subsetting using Focused Identification of the Germplasm Strategy (FIGS) (Version 1.0.2)
2021
iccTraj : Estimates the Intraclass Correlation Coefficient for Trajectory Data (Version 1.0.4)
2023
ihclust : Iterative Hierarchical Clustering (IHC) (Version 0.1.0)
2022
imageseg : Deep Learning Models for Image Segmentation (Version 0.5.0)
2021
imanr : Identify the Racial Complex of Native Corns from Mexico (Version 1.0.2)
2024
immunaut : Machine Learning Immunogenicity and Vaccine Response Analysis (Version 1.0.1)
2024
immunarch : Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires (Version 0.9.1)
2020
inctools : Incidence Estimation Tools (Version 1.0.15)
2016
inferCSN : Inferring Cell-Specific Gene Regulatory Network (Version 1.0.8)
2023
influential : Identification and Classification of the Most Influential Nodes (Version 2.2.9)
2020
intamap : Procedures for Automated Interpolation (Version 1.5-7)
2009
intccr : Semiparametric Competing Risks Regression under Interval Censoring (Version 3.0.4)
2017
integIRTy : Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory (Version 1.0.7)
2017
interflex : Multiplicative Interaction Models Diagnostics and Visualization (Version 1.2.6)
2017
intkrige : A Numerical Implementation of Interval-Valued Kriging (Version 1.0.1)
2019
intmed : Mediation Analysis using Interventional Effects (Version 0.1.2)
2020
isoWater : Discovery, Retrieval, and Analysis of Water Isotope Data (Version 1.2.0)
2021
isocat : Isotope Origin Clustering and Assignment Tools (Version 0.3.0)
2019
ivDiag : Estimation and Diagnostic Tools for Instrumental Variables Designs (Version 1.0.6)
2023
jSDM : Joint Species Distribution Models (Version 0.2.6)
2019
jackknifeR : Delete-d Jackknife for Point and Interval Estimation (Version 1.2.0)
2022
jackstrap : Correcting Nonparametric Frontier Measurements for Outliers (Version 0.1.0)
2020
joineRML : Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes (Version 0.4.6)
2016
kcpRS : Kernel Change Point Detection on the Running Statistics (Version 1.1.1)
2019
kdevine : Multivariate Kernel Density Estimation with Vine Copulas (Version 0.4.5)
2017
kdry : K's "Don't Repeat Yourself"-Collection (Version 0.0.2)
2023
kergp : Gaussian Process Laboratory (Version 0.5.8)
2015
kernhaz : Kernel Estimation of Hazard Function in Survival Analysis (Version 0.1.0)
2018
kfa : K-Fold Cross Validation for Factor Analysis (Version 0.2.2)
2021
kfino : Kalman Filter for Impulse Noised Outliers (Version 1.0.0)
2022
kko : Kernel Knockoffs Selection for Nonparametric Additive Models (Version 1.0.1)
2022
kmBlock : k-Means Like Blockmodeling of One-Mode and Linked Networks (Version 0.1.2)
2023
knnp : Time Series Prediction using K-Nearest Neighbors Algorithm (Parallel) (Version 2.0.0)
2018
knockoff : The Knockoff Filter for Controlled Variable Selection (Version 0.3.6)
2014
kyotil : Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies (Version 2024.11-01)
2013
landsepi : Landscape Epidemiology and Evolution (Version 1.5.1)
2018
latrend : A Framework for Clustering Longitudinal Data (Version 1.6.1)
2020
lavaSearch2 : Tools for Model Specification in the Latent Variable Framework (Version 2.0.3)
2018
lboxcox : Implementation of Logistic Box-Cox Regression (Version 1.2)
2022
lcmm : Extended Mixed Models Using Latent Classes and Latent Processes (Version 2.1.0)
2010
ldamatch : Selection of Statistically Similar Research Groups (Version 1.0.3)
2015
ldmppr : Estimate and Simulate from Location Dependent Marked Point Processes (Version 1.0.3)
2024
ldsep : Linkage Disequilibrium Shrinkage Estimation for Polyploids (Version 2.1.5)
2020
leastcostpath : Modelling Pathways and Movement Potential Within a Landscape (Version 2.0.12)
2020
legion : Forecasting Using Multivariate Models (Version 0.1.2)
2021
limorhyde2 : Quantify Rhythmicity and Differential Rhythmicity in Genomic Data (Version 0.1.0)
2022
lmeresampler : Bootstrap Methods for Nested Linear Mixed-Effects Models (Version 0.2.4)
2016
lmmpar : Parallel Linear Mixed Model (Version 0.1.0)
2017
logiBin : Binning Variables to Use in Logistic Regression (Version 0.3)
2017
lpirfs : Local Projections Impulse Response Functions (Version 0.2.3)
2018
lqmix : Linear Quantile Mixture Models (Version 1.0)
2023
lsbclust : Least-Squares Bilinear Clustering for Three-Way Data (Version 1.1)
2015
mSTEM : Multiple Testing of Local Extrema for Detection of Change Points (Version 1.0-1)
2019
mSimCC : Micro Simulation Model for Cervical Cancer Prevention (Version 0.0.3)
2019
mable : Maximum Approximate Bernstein/Beta Likelihood Estimation (Version 4.1.1)
2018
markovMSM : Methods for Checking the Markov Condition in Multi-State Survival Data (Version 0.1.3)
2021
marqLevAlg : A Parallelized General-Purpose Optimization Based on Marquardt-Levenberg Algorithm (Version 2.0.8)
2012
mcgf : Markov Chain Gaussian Fields Simulation and Parameter Estimation (Version 1.1.1)
2023
mclustAddons : Addons for the 'mclust' Package (Version 0.9.1)
2021
mcmcderive : Derive MCMC Parameters (Version 0.1.2)
2019
metadeconfoundR : Covariate-Sensitive Analysis of Cross-Sectional High-Dimensional Data (Version 1.0.2)
2024
metaplus : Robust Meta-Analysis and Meta-Regression (Version 1.0-5)
2014
meteo : RFSI & STRK Interpolation for Meteo and Environmental Variables (Version 2.0-3)
2015
mevr : Fitting the Metastatistical Extreme Value Distribution MEVD (Version 1.1.1)
2024
mgwrsar : GWR and MGWR with Spatial Autocorrelation (Version 1.0.5)
2018
miceRanger : Multiple Imputation by Chained Equations with Random Forests (Version 1.5.0)
2020
midasml : Estimation and Prediction Methods for High-Dimensional Mixed Frequency Time Series Data (Version 0.1.10)
2020
mimi : Main Effects and Interactions in Mixed and Incomplete Data (Version 0.2.0)
2019
missForest : Nonparametric Missing Value Imputation using Random Forest (Version 1.5)
2011
missMDA : Handling Missing Values with Multivariate Data Analysis (Version 1.19)
2010
misspi : Missing Value Imputation in Parallel (Version 0.1.0)
2023
mistral : Methods in Structural Reliability (Version 2.2.2)
2013
mlrv : Long-Run Variance Estimation in Time Series Regression (Version 0.1.2)
2023
mmb : Arbitrary Dependency Mixed Multivariate Bayesian Models (Version 0.13.3)
2020
mnet : Modeling Group Differences and Moderation Effects in Statistical Network Models (Version 0.1.2)
2023
moc.gapbk : Multi-Objective Clustering Algorithm Guided by a-Priori Biological Knowledge (Version 0.1.3)
2019
modACDC : Association of Covariance for Detecting Differential Co-Expression (Version 2.0.1)
2023
modeltime.ensemble : Ensemble Algorithms for Time Series Forecasting with Modeltime (Version 1.0.4)
2020
modeltime : The Tidymodels Extension for Time Series Modeling (Version 1.3.1)
2020
momentuHMM : Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models (Version 1.5.5)
2017
monoClust : Perform Monothetic Clustering with Extensions to Circular Data (Version 1.2.1)
2020
moreparty : A Toolbox for Conditional Inference Trees and Random Forests (Version 0.4)
2020
mpath : Regularized Linear Models (Version 0.4-2.26)
2014
mplot : Graphical Model Stability and Variable Selection Procedures (Version 1.0.6)
2015
mrMLM.GUI : Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study with Graphical User Interface (Version 4.0.2)
2018
mrMLM : Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for GWAS (Version 5.0.1)
2016
msaenet : Multi-Step Adaptive Estimation Methods for Sparse Regressions (Version 3.1.2)
2016
msm : Multi-State Markov and Hidden Markov Models in Continuous Time (Version 1.8.2)
2002
mstherm : Analyze MS/MS Protein Melting Data (Version 0.4.7)
2017
mtlgmm : Unsupervised Multi-Task and Transfer Learning on Gaussian Mixture Models (Version 0.1.0)
2022
multiApply : Apply Functions to Multiple Multidimensional Arrays or Vectors (Version 2.1.4)
2017
multiFANOVA : Multiple Contrast Tests for Functional Data (Version 0.1.0)
2023
multinomialLogitMix : Clustering Multinomial Count Data under the Presence of Covariates (Version 1.1)
2022
mutSignatures : Decipher Mutational Signatures from Somatic Mutational Catalogs (Version 2.1.1)
2017
mvhtests : Multivariate Hypothesis Tests (Version 1.0)
2023
nestedcv : Nested Cross-Validation with 'glmnet' and 'caret' (Version 0.7.12)
2022
nestedmodels : Tidy Modelling for Nested Data (Version 1.1.0)
2022
netcom : NETwork COMparison Inference (Version 2.1.7)
2017
noisyr : Noise Quantification in High Throughput Sequencing Output (Version 1.0.0)
2021
nonprobsvy : Inference Based on Non-Probability Samples (Version 0.1.1)
2024
npcurePK : Mixture Cure Model Estimation with Cure Status Partially Known (Version 1.0-2)
2023
npregfast : Nonparametric Estimation of Regression Models with Factor-by-Curve Interactions (Version 1.5.2)
2015
oosse : Out-of-Sample R² with Standard Error Estimation (Version 1.0.11)
2023
opGMMassessment : Optimized Automated Gaussian Mixture Assessment (Version 0.4)
2021
opdisDownsampling : Optimal Distribution Preserving Down-Sampling of Bio-Medical Data (Version 1.0.1)
2021
optiSel : Optimum Contribution Selection and Population Genetics (Version 2.0.9)
2016
ormBigData : Fitting Semiparametric Cumulative Probability Models for Big Data (Version 0.0.1)
2021
otrimle : Robust Model-Based Clustering (Version 2.0)
2016
pGRN : Single-Cell RNA Sequencing Pseudo-Time Based Gene Regulatory Network Inference (Version 0.3.5)
2023
pROC : Display and Analyze ROC Curves (Version 1.18.5)
2010
packMBPLSDA : Multi-Block Partial Least Squares Discriminant Analysis (Version 0.9.0)
2019
paleoTS : Analyze Paleontological Time-Series (Version 0.6.2)
2006
parafac4microbiome : Parallel Factor Analysis Modelling of Longitudinal Microbiome Data (Version 1.0.3)
2024
paramsim : Parameterized Simulation (Version 0.1.0)
2023
pathfindR : Enrichment Analysis Utilizing Active Subnetworks (Version 2.4.1)
2018
pbo : Probability of Backtest Overfitting (Version 1.3.5)
2014
pchc : Bayesian Network Learning with the PCHC and Related Algorithms (Version 1.3)
2020
pdp : Partial Dependence Plots (Version 0.8.2)
2016
pemultinom : L1-Penalized Multinomial Regression with Statistical Inference (Version 0.1.0)
2023
pencal : Penalized Regression Calibration (PRC) for the Dynamic Prediction of Survival (Version 2.2.2)
2020
pencopulaCond : Estimating Non-Simplified Vine Copulas Using Penalized Splines (Version 0.2)
2017
perms : Fast Permutation Computation (Version 1.14)
2023
permutes : Permutation Tests for Time Series Data (Version 2.8)
2018
perspectev : Permutation of Species During Turnover Events (Version 1.1)
2015
pheble : Classifying High-Dimensional Phenotypes with Ensemble Learning (Version 0.1.0)
2023
phenomap : Projecting Satellite-Derived Phenology in Space (Version 2.0.1)
2017
phenopix : Process Digital Images of a Vegetation Cover (Version 2.4.4)
2017
phers : Calculate Phenotype Risk Scores (Version 1.0.2)
2022
phytools : Phylogenetic Tools for Comparative Biology (and Other Things) (Version 2.3-0)
2011
pksensi : Global Sensitivity Analysis in Physiologically Based Kinetic Modeling (Version 1.2.3)
2018
plasso : Cross-Validated (Post-) Lasso (Version 0.1.2)
2023
plyr : Tools for Splitting, Applying and Combining Data (Version 1.8.9)
2008
pmartR : Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data (Version 2.4.6)
2023
pmparser : Create and Maintain a Relational Database of Data from PubMed/MEDLINE (Version 1.0.20)
2022
poems : Pattern-Oriented Ensemble Modeling System (Version 1.3.1)
2021
polymapR : Linkage Analysis in Outcrossing Polyploids (Version 1.1.6)
2017
polypharmacy : Calculate Several Polypharmacy Indicators (Version 1.0.0)
2021
polyqtlR : QTL Analysis in Autopolyploid Bi-Parental F1 Populations (Version 0.1.1)
2020
pomdp : Infrastructure for Partially Observable Markov Decision Processes (POMDP) (Version 1.2.4)
2018
poolABC : Approximate Bayesian Computation with Pooled Sequencing Data (Version 1.0.0)
2023
poolfstat : Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data (Version 3.0.0)
2018
potential : Implementation of the Potential Model (Version 0.2.0)
2020
pre : Prediction Rule Ensembles (Version 1.0.7)
2016
predhy.GUI : Genomic Prediction of Hybrid Performance with Graphical User Interface (Version 2.0.1)
2023
predhy : Genomic Prediction of Hybrid Performance (Version 2.1.1)
2019
productivity : Indices of Productivity Using Data Envelopment Analysis (DEA) (Version 1.1.0)
2016
projpred : Projection Predictive Feature Selection (Version 2.8.0)
2018
protr : Generating Various Numerical Representation Schemes for Protein Sequences (Version 1.7-4)
2012
psborrow : Bayesian Dynamic Borrowing with Propensity Score (Version 0.2.1)
2021
psgp : Projected Spatial Gaussian Process Methods (Version 0.3-21)
2009
qcluster : Clustering via Quadratic Scoring (Version 1.2)
2024
qfa : Quantile-Frequency Analysis (QFA) of Time Series (Version 3.1)
2013
qgam : Smooth Additive Quantile Regression Models (Version 1.3.4)
2017
qtlpoly : Random-Effect Multiple QTL Mapping in Autopolyploids (Version 0.2.4)
2021
quickNmix : Asymptotic N-Mixture Model Fitting (Version 1.1.1)
2021
rENA : Epistemic Network Analysis (Version 0.2.7)
2017
rSHAPE : Simulated Haploid Asexual Population Evolution (Version 0.3.2)
2019
rSPDE : Rational Approximations of Fractional Stochastic Partial Differential Equations (Version 2.4.0)
2019
ramsvm : Reinforced Angle-Based Multicategory Support Vector Machines (Version 2.3)
2016
randomGLM : Random General Linear Model Prediction (Version 1.10-1)
2013
randomLCA : Random Effects Latent Class Analysis (Version 1.1-4)
2008
randomUniformForest : Random Uniform Forests for Classification, Regression and Unsupervised Learning (Version 1.1.6)
2014
rapidsplithalf : A Fast Split-Half Reliability Algorithm (Version 0.3)
2024
rassta : Raster-Based Spatial Stratification Algorithms (Version 1.0.6)
2021
rasterdiv : Diversity Indices for Numerical Matrices (Version 0.3.6)
2020
rayshader : Create Maps and Visualize Data in 2D and 3D (Version 0.37.3)
2018
rcontroll : Individual-Based Forest Growth Simulator 'TROLL' (Version 0.1.2)
2023
recmap : Compute the Rectangular Statistical Cartogram (Version 1.0.17)
2016
reddPrec : Reconstruction of Daily Data - Precipitation (Version 2.0.3)
2016
redistmetrics : Redistricting Metrics (Version 1.0.7)
2021
redist : Simulation Methods for Legislative Redistricting (Version 4.2.0)
2015
refreg : Conditional Multivariate Reference Regions (Version 0.1.1)
2021
regda : Regularised Discriminant Analysis (Version 1.0)
2023
regRSM : Random Subspace Method (RSM) for Linear Regression (Version 0.5)
2014
rem : Relational Event Models (REM) (Version 1.3.1)
2016
remotePARTS : Spatiotemporal Autoregression Analyses for Large Data Sets (Version 1.0.4)
2023
representr : Create Representative Records After Entity Resolution (Version 0.1.5)
2020
resemble : Memory-Based Learning in Spectral Chemometrics (Version 2.2.3)
2014
resilience : Predictors of Resilience to a Stressor in a Single-Arm Study (Version 2024.1.2)
2023
rgenius : Get 'Genius' API Lyrics (Version 0.1.0)
2020
riAFTBART : A Flexible Approach for Causal Inference with Multiple Treatments and Clustered Survival Outcomes (Version 0.3.3)
2022
riskRegression : Risk Regression Models and Prediction Scores for Survival Analysis with Competing Risks (Version 2023.12.21)
2011
riskscores : Optimized Integer Risk Score Models (Version 1.1.1)
2023
riverconn : Fragmentation and Connectivity Indices for Riverscapes (Version 0.3.31)
2022
rlfsm : Simulations and Statistical Inference for Linear Fractional Stable Motions (Version 1.1.2)
2018
rmfanova : Repeated Measures Functional Analysis of Variance (Version 0.1.0)
2023
rnaCrosslinkOO : Analysis of RNA Crosslinking Data (Version 0.1.4)
2024
robmixglm : Robust Generalized Linear Models (GLM) using Mixtures (Version 1.2-4)
2018
robust2sls : Outlier Robust Two-Stage Least Squares Inference and Testing (Version 0.2.2)
2021
robustBLME : Robust Bayesian Linear Mixed-Effects Models using ABC (Version 0.1.3)
2017
robustbase : Basic Robust Statistics (Version 0.99-4-1)
2006
robustrao : An Extended Rao-Stirling Diversity Index to Handle Missing Data (Version 1.0-5)
2016
rsides : SIDES-Based Subgroup Search Algorithms (Version 0.1)
2024
rsppfp : R's Shortest Path Problem with Forbidden Subpaths (Version 1.0.4)
2018
runexp : Softball Run Expectancy using Markov Chains and Simulation (Version 0.2.1)
2021
sRDA : Sparse Redundancy Analysis (Version 1.0.0)
2017
sae.projection : Small Area Estimation Using Model-Assisted Projection Method (Version 0.1.0)
2024
santaR : Short Asynchronous Time-Series Analysis (Version 1.2.4)
2018
sars : Fit and Compare Species-Area Relationship Models Using Multimodel Inference (Version 1.3.7)
2018
scDHA : Single-Cell Decomposition using Hierarchical Autoencoder (Version 1.2.2)
2021
scanstatistics : Space-Time Anomaly Detection using Scan Statistics (Version 1.1.1)
2016
scoper : Spectral Clustering-Based Method for Identifying B Cell Clones (Version 1.3.0)
2018
scorecard : Credit Risk Scorecard (Version 0.4.4)
2017
sdPrior : Scale-Dependent Hyperpriors in Structured Additive Distributional Regression (Version 1.0-0)
2015
seeker : Simplified Fetching and Processing of Microarray and RNA-Seq Data (Version 1.1.6)
2022
segMGarch : Multiple Change-Point Detection for High-Dimensional GARCH Processes (Version 1.2)
2018
segmentr : Segment Data With Maximum Likelihood (Version 0.2.0)
2019
semsfa : Semiparametric Estimation of Stochastic Frontier Models (Version 1.1)
2015
sensitivity : Global Sensitivity Analysis of Model Outputs and Importance Measures (Version 1.30.1)
2006
sephora : Statistical Estimation of Phenological Parameters (Version 0.1.31)
2024
sentometrics : An Integrated Framework for Textual Sentiment Time Series Aggregation and Prediction (Version 1.0.0)
2017
seriation : Infrastructure for Ordering Objects Using Seriation (Version 1.5.7)
2007
sgsR : Structurally Guided Sampling (Version 1.4.5)
2022
shazam : Immunoglobulin Somatic Hypermutation Analysis (Version 1.2.0)
2016
simMP : Simulate Somatic Mutations in Cancer Genomes from Mutational Processes (Version 0.17.3)
2017
simPop : Simulation of Complex Synthetic Data Information (Version 2.1.3)
2014
simdata : Generate Simulated Datasets (Version 0.4.1)
2024
simsalapar : Tools for Simulation Studies in Parallel (Version 1.0-12)
2013
singleRcapture : Single-Source Capture-Recapture Models (Version 0.2.1.3)
2023
sivs : Stable Iterative Variable Selection (Version 0.2.10)
2020
skewMLRM : Estimation for Scale-Shape Mixtures of Skew-Normal Distributions (Version 1.6)
2021
skipTrack : A Bayesian Hierarchical Model that Controls for Non-Adherence in Mobile Menstrual Cycle Tracking (Version 0.1.0)
2024
skpr : Design of Experiments Suite: Generate and Evaluate Optimal Designs (Version 1.7.1)
2017
skyscapeR : Data Analysis and Visualization for Skyscape Archaeology (Version 1.0.0)
2017
smacof : Multidimensional Scaling (Version 2.1-7)
2008
smam : Statistical Modeling of Animal Movements (Version 0.7.2)
2013
smooth : Forecasting Using State Space Models (Version 4.1.0)
2016
sms : Spatial Microsimulation (Version 2.3.1)
2012
snpAIMeR : Assess the Diagnostic Power of Genomic Marker Combinations (Version 2.1.1)
2023
soundgen : Sound Synthesis and Acoustic Analysis (Version 2.7.1)
2017
spAbundance : Univariate and Multivariate Spatial Modeling of Species Abundance (Version 0.2.1)
2023
spBPS : Bayesian Predictive Stacking for Scalable Geospatial Transfer Learning (Version 0.0-4)
2024
spOccupancy : Single-Species, Multi-Species, and Integrated Spatial Occupancy Models (Version 0.8.0)
2021
spant : MR Spectroscopy Analysis Tools (Version 3.1.0)
2017
sparr : Spatial and Spatiotemporal Relative Risk (Version 2.3-15)
2010
sparsevar : Sparse VAR/VECM Models Estimation (Version 0.1.0)
2016
spatPomp : Inference for Spatiotemporal Partially Observed Markov Processes (Version 1.0.0)
2021
spatialRF : Easy Spatial Modeling with Random Forest (Version 1.1.4)
2021
spectr : Calculate the Periodogram of a Time-Course (Version 1.0.1)
2022
splitSelect : Best Split Selection Modeling for Low-Dimensional Data (Version 1.0.3)
2020
spmoran : Fast Spatial and Spatio-Temporal Regression using Moran Eigenvectors (Version 0.3.3)
2017
ss3sim : Fisheries Stock Assessment Simulation Testing with Stock Synthesis (Version 1.0.3)
2014
ssMRCD : Spatially Smoothed MRCD Estimator (Version 1.1.0)
2023
stR : Seasonal Trend Decomposition Using Regression (Version 0.7)
2016
sta : Seasonal Trend Analysis for Time Series Imagery in R (Version 0.1.7)
2021
staRdom : PARAFAC Analysis of EEMs from DOM (Version 1.1.28)
2018
statGraph : Statistical Methods for Graphs (Version 1.0.6)
2017
stfit : Spatio-Temporal Functional Imputation Tool (Version 0.99.9)
2020
stgam : Spatially and Temporally Varying Coefficient Models Using Generalized Additive Models (Version 0.0.1.2)
2024
sts : Estimation of the Structural Topic and Sentiment-Discourse Model for Text Analysis (Version 1.2)
2024
sureLDA : A Novel Multi-Disease Automated Phenotyping Method for the EHR (Version 0.1.0-1)
2020
surveyvoi : Survey Value of Information (Version 1.0.6)
2021
survidm : Inference and Prediction in an Illness-Death Model (Version 1.3.2)
2017
swag : Sparse Wrapper Algorithm (Version 0.1.0)
2020
tclust : Robust Trimmed Clustering (Version 2.0-5)
2010
templateICAr : Estimate Brain Networks and Connectivity with ICA and Empirical Priors (Version 0.9.1)
2022
text2map : R Tools for Text Matrices, Embeddings, and Networks (Version 0.2.0)
2021
tidysdm : Species Distribution Models with Tidymodels (Version 0.9.5)
2023
tigger : Infers Novel Immunoglobulin Alleles from Sequencing Data (Version 1.1.0)
2016
tip : Bayesian Clustering Using the Table Invitation Prior (TIP) (Version 0.1.0)
2022
track2KBA : Identifying Important Areas from Animal Tracking Data (Version 1.1.2)
2021
transfR : Transfer of Hydrograph from Gauged to Ungauged Catchments (Version 1.0.11)
2021
treesliceR : To Slice Phylogenetic Trees and Infer Evolutionary Patterns Over Time (Version 1.0.2)
2023
truh : Two-Sample Nonparametric Testing Under Heterogeneity (Version 1.0.0)
2021
tsensembler : Dynamic Ensembles for Time Series Forecasting (Version 0.1.0)
2017
turboEM : A Suite of Convergence Acceleration Schemes for EM, MM and Other Fixed-Point Algorithms (Version 2021.1)
2011
twc : Terrestrial Water Cycle (Version 0.0.1)
2024
twosigma : DE Analysis for Single-Cell RNA-Sequencing Data (Version 1.0.2)
2021
ubiquity : PKPD, PBPK, and Systems Pharmacology Modeling Tools (Version 2.0.3)
2019
ukbtools : Manipulate and Explore UK Biobank Data (Version 0.11.3)
2017
unsystation : Stationarity Test Based on Unsystematic Sub-Sampling (Version 0.2.0)
2016
varTestnlme : Variance Components Testing for Linear and Nonlinear Mixed Effects Models (Version 1.3.5)
2020
varclust : Variables Clustering (Version 0.9.4)
2019
varitas : Variant Calling in Targeted Analysis Sequencing Data (Version 0.0.2)
2020
vip : Variable Importance Plots (Version 0.4.1)
2018
viscomplexr : Phase Portraits of Functions in the Complex Number Plane (Version 1.1.2)
2020
voiceR : Voice Analytics for Social Scientists (Version 0.1.0)
2023
weightQuant : Weights for Incomplete Longitudinal Data and Quantile Regression (Version 1.0.1)
2018
worldmet : Import Surface Meteorological Data from NOAA Integrated Surface Database (ISD) (Version 0.9.8)
2017
wxgenR : A Stochastic Weather Generator with Seasonality (Version 1.4.2)
2023
xrnet : Hierarchical Regularized Regression (Version 1.0.0)
2020
yaConsensus : Consensus Clustering of Omic Data (Version 1.0)
2021
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