ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

Canonical link: https://rscholar.com/pkg/ade4

Stéphane Dray • Anne-Béatrice Dufour, • Jean Thioulouse • Sandrine Pavoine • Jean R. Lobry • Sébastien Ollier • Daniel Borcard • Pierre Legendre • Stéphanie Bougeard • Aurélie Siberchicot. Based on earlier work by Daniel Chessel. • View description and downloads View dependencies GitHub project

2002 Published

1.7-22 Version

0 Citations

10 Authors

Referenced by ⇅	Year
HierDpart: Partitioning Hierarchical Diversity and Differentiation Across Metrics and Scales, from Genes to Ecosystems (Version 1.5.0)	2018
iSDM: Invasive Species Distribution Modelling (Version 1.0)	2017
mbclusterwise: Clusterwise Multiblock Analyses (Version 1.0)	2016
pamctdp: Principal Axes Methods for Contingency Tables with Partition Structures on Rows and Columns (Version 0.3.2)	2010
qha: Qualitative Harmonic Analysis (Version 0.0.8)	2016
Rarefy: Rarefaction Methods (Version 1.1.1)	2020
subniche: Within Outlying Mean Indexes: Refining the OMI Analysis (Version 1.5)	2016
brainGraph: Graph Theory Analysis of Brain MRI Data (Version 3.1.0)	2015
Autoplotprotein: Development of Visualization Tools for Protein Sequence (Version 1.1)	2017
BalanceCheck: Balance Check for Multiple Covariates in Matched Observational Studies (Version 0.2)	2016
CAESAR.Suite: CAESAR: a Cross-Technology and Cross-Resolution Framework for Spatial Omics Annotation (Version 0.1.0)	2024
DrBats: Data Representation: Bayesian Approach That's Sparse (Version 0.1.6)	2016
FD: Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology (Version 1.0-12.3)	2009
FactoClass: Combination of Factorial Methods and Cluster Analysis (Version 1.2.9)	2008
GDAtools: Geometric Data Analysis (Version 2.1)	2014
GUniFrac: Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis (Version 1.8)	2012
Guerry: Maps, Data and Methods Related to Guerry (1833) "Moral Statistics of France" (Version 1.8.3)	2009
Laterality: Functions to Calculate Common Laterality Statistics in Primatology (Version 0.9.5)	2012
LearnPCA: Functions, Data Sets and Vignettes to Aid in Learning Principal Components Analysis (PCA) (Version 0.3.4)	2022
MiSPU: Microbiome Based Sum of Powered Score (MiSPU) Tests (Version 1.0)	2016
MorphoTools2: Multivariate Morphometric Analysis (Version 1.0.2.1)	2021
OGI: Objective General Index (Version 1.0.0)	2017
PBD: Protracted Birth-Death Model of Diversification (Version 1.4)	2014
PopGenReport: A Simple Framework to Analyse Population and Landscape Genetic Data (Version 3.1)	2012
ProcMod: Informative Procrustean Matrix Correlation (Version 1.0.8)	2019
RVAideMemoire: Testing and Plotting Procedures for Biostatistics (Version 0.9-83-7)	2011
SCGLR: Supervised Component Generalized Linear Regression (Version 3.0)	2013
SPARTAAS: Statistical Pattern Recognition and daTing using Archaeological Artefacts assemblageS (Version 1.2.4)	2021
STEPCAM: ABC-SMC Inference of STEPCAM (Version 1.2)	2014
Select: Determines Species Probabilities Based on Functional Traits (Version 1.4)	2017
Thresher: Threshing and Reaping for Principal Components (Version 1.1.4)	2018
ade4TkGUI: 'ade4' Tcl/Tk Graphical User Interface (Version 0.3-1)	2006
adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data (Version 1.0-21)	2015
adegenet: Exploratory Analysis of Genetic and Genomic Data (Version 2.1.10)	2007
adehabitatHR: Home Range Estimation (Version 0.4.22)	2011
adehabitatHS: Analysis of Habitat Selection by Animals (Version 0.3.18)	2011
adehabitatLT: Analysis of Animal Movements (Version 0.3.28)	2011
adephylo: Exploratory Analyses for the Phylogenetic Comparative Method (Version 1.1-16)	2009
adespatial: Multivariate Multiscale Spatial Analysis (Version 0.3-24)	2016
adiv: Analysis of Diversity (Version 2.2.1)	2017
ads: Spatial Point Patterns Analysis (Version 1.5-10)	2007
berryFunctions: Function Collection Related to Plotting and Hydrology (Version 1.22.5)	2014
bikm1: Co-Clustering Adjusted Rand Index and Bikm1 Procedure for Contingency and Binary Data-Sets (Version 1.1.0)	2019
bioregion: Comparison of Bioregionalisation Methods (Version 1.1.1-1)	2023
cati: Community Assembly by Traits: Individuals and Beyond (Version 0.99.4)	2014
clusterSim: Searching for Optimal Clustering Procedure for a Data Set (Version 0.51-5)	2007
dispRity: Measuring Disparity (Version 1.9)	2018
divent: Entropy Partitioning to Measure Diversity (Version 0.4-4)	2024
ecospat: Spatial Ecology Miscellaneous Methods (Version 4.1.1)	2014
ecostats: Code and Data Accompanying the Eco-Stats Text (Warton 2022) (Version 1.2.1)	2020
entropart: Entropy Partitioning to Measure Diversity (Version 1.6-15)	2013
epimdr: Functions and Data for "Epidemics: Models and Data in R" (Version 0.6-5)	2018
epimdr2: Functions and Data for "Epidemics: Models and Data in R (2nd Edition)" (Version 1.0-9)	2022
explor: Interactive Interfaces for Results Exploration (Version 0.3.10)	2015
factoextra: Extract and Visualize the Results of Multivariate Data Analyses (Version 1.0.7)	2016
funrar: Functional Rarity Indices Computation (Version 1.5.0)	2016
funspace: Creating and Representing Functional Trait Spaces (Version 0.2.2)	2023
gSeg: Graph-Based Change-Point Detection (g-Segmentation) (Version 1.0)	2014
gTests: Graph-Based Two-Sample Tests (Version 0.2)	2016
gTestsMulti: New Graph-Based Multi-Sample Tests (Version 0.1.1)	2022
genoPlotR: Plot Publication-Grade Gene and Genome Maps (Version 0.8.11)	2010
glmmTMB: Generalized Linear Mixed Models using Template Model Builder (Version 1.1.10)	2017
hierfstat: Estimation and Tests of Hierarchical F-Statistics (Version 0.5-11)	2004
hillR: Diversity Through Hill Numbers (Version 0.5.2)	2018
mFD: Compute and Illustrate the Multiple Facets of Functional Diversity (Version 1.0.7)	2021
memgene: Spatial Pattern Detection in Genetic Distance Data Using Moran's Eigenvector Maps (Version 1.0.2)	2014
metaprotr: Metaproteomics Post-Processing Analysis (Version 1.2.2)	2021
multiblock: Multiblock Data Fusion in Statistics and Machine Learning (Version 0.8.8.2)	2021
packMBPLSDA: Multi-Block Partial Least Squares Discriminant Analysis (Version 0.9.0)	2019
pctax: Professional Comprehensive Omics Data Analysis (Version 0.1.3)	2024
pez: Phylogenetics for the Environmental Sciences (Version 1.2-4)	2014
phylobase: Base Package for Phylogenetic Structures and Comparative Data (Version 0.8.12)	2009
plotprotein: Development of Visualization Tools for Protein Sequence (Version 1.0)	2017
polysat: Tools for Polyploid Microsatellite Analysis (Version 1.7-7)	2010
poppr: Genetic Analysis of Populations with Mixed Reproduction (Version 2.9.6)	2013
revtools: Tools to Support Evidence Synthesis (Version 0.4.1)	2018
rgTest: Robust Graph-Based Two-Sample Test (Version 0.1)	2023
seqhandbook: Miscellaneous Tools for Sequence Analysis (Version 0.1.1)	2020
seqinr: Biological Sequences Retrieval and Analysis (Version 4.2-36)	2004
symbolicDA: Analysis of Symbolic Data (Version 0.7-1)	2013
treespace: Statistical Exploration of Landscapes of Phylogenetic Trees (Version 1.1.4.3)	2017
virtualspecies: Generation of Virtual Species Distributions (Version 1.6)	2014
wallace: A Modular Platform for Reproducible Modeling of Species Niches and Distributions (Version 2.1.3)	2017

RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN). Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.