ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

Canonical link: https://scholar.rpkg.net/pkg/ade4

Stéphane Dray, Anne-Béatrice Dufour, and Jean Thioulouse, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, Daniel Borcard, Pierre Legendre, Stéphanie Bougeard and Aurélie Siberchicot • View description and downloads View dependencies GitHub project

2002 Published

1.7-22 Version

0 Citations

1 Authors

Referenced by ⇅	Year
HierDpart: Partitioning Hierarchical Diversity and Differentiation Across Metrics and Scales, from Genes to Ecosystems (Version 1.5.0)	2018
iSDM: Invasive Species Distribution Modelling (Version 1.0)	2017
mbclusterwise: Clusterwise Multiblock Analyses (Version 1.0)	2016
pamctdp: Principal Axes Methods for Contingency Tables with Partition Structures on Rows and Columns (Version 0.3.2)	2010
qha: Qualitative Harmonic Analysis (Version 0.0.8)	2016
Rarefy: Rarefaction Methods (Version 1.1.1)	2020
subniche: Within Outlying Mean Indexes: Refining the OMI Analysis (Version 1.5)	2016
Autoplotprotein: Development of Visualization Tools for Protein Sequence (Version 1.1)	2017
BalanceCheck: Balance Check for Multiple Covariates in Matched Observational Studies (Version 0.2)	2016
DrBats: Data Representation: Bayesian Approach That's Sparse (Version 0.1.6)	2016
FD: Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology (Version 1.0-12.3)	2009
FactoClass: Combination of Factorial Methods and Cluster Analysis (Version 1.2.9)	2008
GDAtools: Geometric Data Analysis (Version 2.1)	2014
GUniFrac: Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis (Version 1.8)	2012
Guerry: Maps, Data and Methods Related to Guerry (1833) "Moral Statistics of France" (Version 1.8.3)	2009
Laterality: Functions to Calculate Common Laterality Statistics in Primatology (Version 0.9.4)	2012
LearnPCA: Functions, Data Sets and Vignettes to Aid in Learning Principal Components Analysis (PCA) (Version 0.2.0)	2022
MiSPU: Microbiome Based Sum of Powered Score (MiSPU) Tests (Version 1.0)	2016
MorphoTools2: Multivariate Morphometric Analysis (Version 1.0.1.1)	2021
OGI: Objective General Index (Version 1.0.0)	2017
PBD: Protracted Birth-Death Model of Diversification (Version 1.4)	2014
PopGenReport: A Simple Framework to Analyse Population and Landscape Genetic Data (Version 3.1)	2012
ProcMod: Informative Procrustean Matrix Correlation (Version 1.0.8)	2019
RVAideMemoire: Testing and Plotting Procedures for Biostatistics (Version 0.9-83-7)	2011
SCGLR: Supervised Component Generalized Linear Regression (Version 3.0)	2013
SPARTAAS: Statistical Pattern Recognition and daTing using Archaeological Artefacts assemblageS (Version 1.2.1)	2021
STEPCAM: ABC-SMC Inference of STEPCAM (Version 1.2)	2014
Select: Determines Species Probabilities Based on Functional Traits (Version 1.4)	2017
Thresher: Threshing and Reaping for Principal Components (Version 1.1.3)	2018
ade4TkGUI: 'ade4' Tcl/Tk Graphical User Interface (Version 0.3-1)	2006
adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data (Version 1.0-21)	2015
adegenet: Exploratory Analysis of Genetic and Genomic Data (Version 2.1.10)	2007
adehabitatHR: Home Range Estimation (Version 0.4.21)	2011
adehabitatHS: Analysis of Habitat Selection by Animals (Version 0.3.17)	2011
adehabitatLT: Analysis of Animal Movements (Version 0.3.27)	2011
adephylo: Exploratory Analyses for the Phylogenetic Comparative Method (Version 1.1-16)	2009
adespatial: Multivariate Multiscale Spatial Analysis (Version 0.3-23)	2016
adiv: Analysis of Diversity (Version 2.2.1)	2017
ads: Spatial Point Patterns Analysis (Version 1.5-10)	2007
berryFunctions: Function Collection Related to Plotting and Hydrology (Version 1.22.5)	2014
bikm1: Co-Clustering Adjusted Rand Index and Bikm1 Procedure for Contingency and Binary Data-Sets (Version 1.1.0)	2019
bioregion: Comparison of Bioregionalisation Methods (Version 1.1.0)	2023
brainGraph: Graph Theory Analysis of Brain MRI Data (Version 3.1.0)	2015
cati: Community Assembly by Traits: Individuals and Beyond (Version 0.99.4)	2014
clusterSim: Searching for Optimal Clustering Procedure for a Data Set (Version 0.51-3)	2007
dispRity: Measuring Disparity (Version 1.8)	2018
ecospat: Spatial Ecology Miscellaneous Methods (Version 4.0.0)	2014
ecostats: Code and Data Accompanying the Eco-Stats Text (Warton 2022) (Version 1.1.11)	2020
entropart: Entropy Partitioning to Measure Diversity (Version 1.6-13)	2013
epimdr: Functions and Data for "Epidemics: Models and Data in R" (Version 0.6-5)	2018
epimdr2: Functions and Data for "Epidemics: Models and Data in R (2nd Edition)" (Version 1.0-9)	2022
explor: Interactive Interfaces for Results Exploration (Version 0.3.10)	2015
factoextra: Extract and Visualize the Results of Multivariate Data Analyses (Version 1.0.7)	2016
funrar: Functional Rarity Indices Computation (Version 1.5.0)	2016
funspace: Creating and Representing Functional Trait Spaces (Version 0.2.1)	2023
gSeg: Graph-Based Change-Point Detection (g-Segmentation) (Version 1.0)	2014
gTests: Graph-Based Two-Sample Tests (Version 0.2)	2016
gTestsMulti: New Graph-Based Multi-Sample Tests (Version 0.1.1)	2022
genoPlotR: Plot Publication-Grade Gene and Genome Maps (Version 0.8.11)	2010
hierfstat: Estimation and Tests of Hierarchical F-Statistics (Version 0.5-11)	2004
hillR: Diversity Through Hill Numbers (Version 0.5.2)	2018
mFD: Compute and Illustrate the Multiple Facets of Functional Diversity (Version 1.0.7)	2021
memgene: Spatial Pattern Detection in Genetic Distance Data Using Moran's Eigenvector Maps (Version 1.0.2)	2014
metaprotr: Metaproteomics Post-Processing Analysis (Version 1.2.2)	2021
multiblock: Multiblock Data Fusion in Statistics and Machine Learning (Version 0.8.8.1)	2021
packMBPLSDA: Multi-Block Partial Least Squares Discriminant Analysis (Version 0.9.0)	2019
pctax: Professional Comprehensive Omics Data Analysis (Version 0.1.1)	2024
pez: Phylogenetics for the Environmental Sciences (Version 1.2-4)	2014
phylobase: Base Package for Phylogenetic Structures and Comparative Data (Version 0.8.12)	2009
plotprotein: Development of Visualization Tools for Protein Sequence (Version 1.0)	2017
polysat: Tools for Polyploid Microsatellite Analysis (Version 1.7-7)	2010
poppr: Genetic Analysis of Populations with Mixed Reproduction (Version 2.9.6)	2013
revtools: Tools to Support Evidence Synthesis (Version 0.4.1)	2018
rgTest: Robust Graph-Based Two-Sample Test (Version 0.1)	2023
seqhandbook: Miscellaneous Tools for Sequence Analysis (Version 0.1.1)	2020
seqinr: Biological Sequences Retrieval and Analysis (Version 4.2-36)	2014
symbolicDA: Analysis of Symbolic Data (Version 0.7-1)	2013
treespace: Statistical Exploration of Landscapes of Phylogenetic Trees (Version 1.1.4.3)	2017
virtualspecies: Generation of Virtual Species Distributions (Version 1.6)	2014
wallace: A Modular Platform for Reproducible Modeling of Species Niches and Distributions (Version 2.1.2)	2017

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