msm: Multi-State Markov and Hidden Markov Models in Continuous Time

Canonical link: https://rscholar.com/pkg/msm

Christopher Jackson • View description and downloads View dependencies GitHub project

2002 Published

92 Citations

1 Authors

59 Revisions

1.8.2 Version

GPL-2 License

Referenced by ⇅	Year
BSTZINB: Association Among Disease Counts and Socio-Environmental Factors (Version 2.0.0)	2024
EMC2: Bayesian Hierarchical Analysis of Cognitive Models of Choice (Version 3.0.0)	2024
EventPredInCure: Event Prediction Including Cured Population (Version 1.0)	2024
PRIMEplus: Study Design for Immunotherapy Clinical Trials (Version 1.0.16)	2024
drugdevelopR: Utility-Based Optimal Phase II/III Drug Development Planning (Version 1.0.2)	2024
icmstate: Interval Censored Multi-State Models (Version 0.1.1)	2024
scDECO: Estimating Dynamic Correlation (Version 0.1.0)	2024
FLORAL: Fit Log-Ratio Lasso Regression for Compositional Data (Version 0.4.0)	2023
Petersen: Estimators for Two-Sample Capture-Recapture Studies (Version 2025.3.1)	2023
hmsr: Multipopulation Evolutionary Strategy HMS (Version 1.0.1)	2023
wxgenR: A Stochastic Weather Generator with Seasonality (Version 1.4.2)	2023
Families: Kinship Ties in (Virtual) Multi-Generation Populations (Version 2.0.2)	2022
TrenchR: Tools for Microclimate and Biophysical Ecology (Version 1.1.1)	2022
VirtualPop: Simulation of Populations by Sampling Waiting-Time Distributions (Version 2.0.2)	2022
ammiBayes: Bayesian Ammi Model for Continuous Data (Version 1.0-2)	2022
biodosetools: An R Shiny Application for Biological Dosimetry (Version 3.6.1)	2022
extrafrail: Estimation and Additional Tools for Alternative Shared Frailty Models (Version 1.12)	2022
interactionRCS: Calculate Estimates in Models with Interaction (Version 0.1.1)	2022
riAFTBART: A Flexible Approach for Causal Inference with Multiple Treatments and Clustered Survival Outcomes (Version 0.3.3)	2022
stochLAB: Stochastic Collision Risk Model (Version 1.1.2)	2022
BayesRGMM: Bayesian Robust Generalized Mixed Models for Longitudinal Data (Version 2.2)	2021
OneSampleMR: One Sample Mendelian Randomization and Instrumental Variable Analyses (Version 0.1.5)	2021
cfda: Categorical Functional Data Analysis (Version 0.12.1)	2021
eatRep: Educational Assessment Tools for Replication Methods (Version 0.15.1)	2021
grmsem: Genetic-Relationship-Matrix Structural Equation Modelling (GRMSEM) (Version 1.1.0)	2021
semmcmc: Bayesian Structural Equation Modeling in Multiple Omics Data Integration (Version 0.0.6)	2021
tradepolicy: Replication of 'An Advanced Guide To Trade Policy Analysis' (Version 0.7.0)	2021
ARDL: ARDL, ECM and Bounds-Test for Cointegration (Version 0.2.4)	2020
endoSwitch: Endogenous Switching Regression Models (Version 1.0.0)	2020
horseshoenlm: Nonlinear Regression using Horseshoe Prior (Version 0.0.6)	2020
interactionR: Full Reporting of Interaction Analyses (Version 0.1.7)	2020
pexm: Loading a JAGS Module for the Piecewise Exponential Distribution (Version 1.1.3)	2020
varTestnlme: Variance Components Testing for Linear and Nonlinear Mixed Effects Models (Version 1.3.5)	2020
PanCanVarSel: Pan-Cancer Variable Selection (Version 0.0.3)	2019
SPAS: Stratified-Petersen Analysis System (Version 2025.2.1)	2019
ccostr: Estimation of Mean Costs in Censored Data (Version 0.1.0)	2019
ccrs: Correct and Cluster Response Style Biased Data (Version 0.1.0)	2019
fic: Focused Information Criteria for Model Comparison (Version 1.0.0)	2019
nhm: Non-Homogeneous Markov and Hidden Markov Multistate Models (Version 0.1.1)	2019
simExam: Generate Simulated Data for IRT-Enabled Exams (Version 1.0.0)	2019
spBFA: Spatial Bayesian Factor Analysis (Version 1.3)	2019
stUPscales: Spatio-Temporal Uncertainty Propagation Across Multiple Scales (Version 1.0.3.5)	2018
CopCTS: Copula-Based Semiparametric Analysis for Time Series Data with Detection Limits (Version 1.0.0)	2018
ICcalib: Cox Model with Interval-Censored Starting Time of a Covariate (Version 1.0.8)	2018
cosa: Bound Constrained Optimal Sample Size Allocation (Version 2.1.0)	2018
elect: Estimation of Life Expectancies Using Multi-State Models (Version 1.2)	2018
epiphy: Analysis of Plant Disease Epidemics (Version 0.5.0)	2018
spCP: Spatially Varying Change Points (Version 1.3)	2018
BayesianTools: General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics (Version 0.1.8)	2017
EAinference: Estimator Augmentation and Simulation-Based Inference (Version 0.2.3)	2017
fitteR: Fit Hundreds of Theoretical Distributions to Empirical Data (Version 0.2.0)	2017
frailtyEM: Fitting Frailty Models with the EM Algorithm (Version 1.0.1)	2017
hesim: Health Economic Simulation Modeling and Decision Analysis (Version 0.5.5)	2017
pder: Panel Data Econometrics with R (Version 1.0-2)	2017
womblR: Spatiotemporal Boundary Detection Model for Areal Unit Data (Version 1.0.5)	2017
WPC: Weighted Predictiveness Curve (Version 1.0)	2016
msmtools: Building Augmented Data to Run Multi-State Models with 'msm' Package (Version 2.0.1)	2016
ARCensReg: Fitting Univariate Censored Linear Regression Model with Autoregressive Errors (Version 3.0.1)	2016
CensSpatial: Censored Spatial Models (Version 3.6)	2016
SizeEstimation: Estimating the Sizes of Populations at Risk of HIV Infection from Multiple Data Sources Using a Bayesian Hierarchical Model (Version 1.1.1)	2016
TropFishR: Tropical Fisheries Analysis (Version 1.6.5)	2016
bsam: Bayesian State-Space Models for Animal Movement (Version 1.1.3)	2016
difNLR: DIF and DDF Detection by Non-Linear Regression Models (Version 1.5.1-1)	2016
ei: Ecological Inference (Version 1.3-3)	2016
surrosurv: Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses (Version 1.1.26)	2016
CEoptim: Cross-Entropy R Package for Optimization (Version 1.3)	2015
decisionSupport: Quantitative Support of Decision Making under Uncertainty (Version 1.114)	2015
gmnl: Multinomial Logit Models with Random Parameters (Version 1.1-3.2)	2015
httk: High-Throughput Toxicokinetics (Version 2.5.0)	2015
qte: Quantile Treatment Effects (Version 1.3.1)	2015
score: A Package to Score Behavioral Questionnaires (Version 1.0.2)	2015
sparsereg: Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data (Version 1.2)	2015
iBATCGH: Integrative Bayesian Analysis of Transcriptomic and CGH Data (Version 1.3.1)	2014
DFIT: Differential Functioning of Items and Tests (Version 1.1)	2014
Rchoice: Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters (Version 0.3-6)	2014
breakpoint: An R Package for Multiple Break-Point Detection via the Cross-Entropy Method (Version 1.2)	2014
clustMD: Model Based Clustering for Mixed Data (Version 1.2.1)	2014
rtdists: Response Time Distributions (Version 0.11-5)	2014
gems: Generalized Multistate Simulation Model (Version 1.1.1)	2013
hysteresis: Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses (Version 2.7.2)	2013
markovchain: Easy Handling Discrete Time Markov Chains (Version 0.10.0)	2013
SightabilityModel: Wildlife Sightability Modeling (Version 1.5.5)	2012
oro.pet: Rigorous - Positron Emission Tomography (Version 0.2.7)	2012
parfm: Parametric Frailty Models (Version 2.7.7)	2012
rriskDistributions: Fitting Distributions to Given Data or Known Quantiles (Version 2.1.2)	2012
RMark: R Code for Mark Analysis (Version 3.0.0)	2011
flexsurv: Flexible Parametric Survival and Multi-State Models (Version 2.3.2)	2011
MCMCglmm: MCMC Generalised Linear Mixed Models (Version 2.36)	2009
optBiomarker: Estimation of Optimal Number of Biomarkers for Two-Group Microarray Based Classifications at a Given Error Tolerance Level for Various Classification Rules (Version 1.0-28)	2009
eiPack: Ecological Inference and Higher-Dimension Data Management (Version 0.2-2)	2006
ltm: Latent Trait Models under IRT (Version 1.2-0)	2005
surveillance: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena (Version 1.24.1)	2005

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