R Package Scholar
27,072

viridis: Colorblind-Friendly Color Maps for R

Simon Garnier  Noam Ross  Bob Rudis  Marco Sciaini  Antônio Pedro Camargo  Cédric Scherer   View description and downloadsView dependenciesGitHub project

2015 Published
0.6.5 Version
0 Citations
6 Authors
Referenced by ⇅ Year
CIDER: Meta-Clustering for Single-Cell Data Integration and Evaluation (Version 0.99.1)

2021
crestr: A Probabilistic Approach to Reconstruct Past Climates Using Palaeoecological Datasets (Version 1.2.1)

2021
CSFA: Connectivity Scores with Factor Analysis (Version 1.2.0)

2018
ergmclust: ERGM-Based Network Clustering (Version 1.0.0)

2021
leri: Access Landscape Evaporative Response Index Raster Data (Version 0.0.1)

2019
mobirep: Models Bivariate Dependence and Produces Bivariate Return Periods (Version 0.2.3)

2021
simplevis: Wrappers to Simplify Beautiful "ggplot2" and "leaflet" Visualisation (Version 7.1.0)

2020
StratifiedSampling: Different Methods for Stratified Sampling (Version 0.4.1)

2021
xQTLbiolinks: Integrative Analysis of Quantitative Trait Locus Data of "xQTL" (Version 1.6.2)

2022
yaps: Track Estimation using YAPS (Yet Another Positioning Solver) (Version 1.2.5)

2021
fCWTr: Fast Continuous Wavelet Transform (Version 0.2.1)

2024
MOSS: Multi-Omic Integration via Sparse Singular Value Decomposition (Version 0.2.2)

2021
idmodelr: Infectious Disease Model Library and Utilities (Version 0.4.0)

2019
qad: Quantification of Asymmetric Dependence (Version 1.0.4)

2018
ARPobservation: Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes (Version 1.2.2)

2014
BNPdensity: Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures (Version 2023.3.8)

2011
BSTZINB: Association Among Disease Counts and Socio-Environmental Factors (Version 1.0.1)

2024
BiBitR: R Wrapper for Java Implementation of BiBit (Version 0.3.1)

2016
BioM2: Biologically Explainable Machine Learning Framework (Version 1.1.0)

2023
CAST: 'caret' Applications for Spatial-Temporal Models (Version 1.0.2)

2018
CINNA: Deciphering Central Informative Nodes in Network Analysis (Version 1.2.2)

2017
CoordinateCleaner: Automated Cleaning of Occurrence Records from Biological Collections (Version 3.0.1)

2017
DIGSS: Determination of Intervals Using Georeferenced Survey Simulation (Version 1.0.2)

2021
DSjobtracker: What Skills and Qualifications are Required for Data Science Related Jobs? (Version 2.0.0)

2020
DataVisualizations: Visualizations of High-Dimensional Data (Version 1.3.2)

2018
EHRtemporalVariability: Delineating Temporal Dataset Shifts in Electronic Health Records (Version 1.2.1)

2019
ENMTools: Analysis of Niche Evolution using Niche and Distribution Models (Version 1.1.2)

2020
FFdownload: Download Data from Kenneth French's Website (Version 1.1.1)

2020
FielDHub: A Shiny App for Design of Experiments in Life Sciences (Version 1.4.2)

2021
ForestGapR: Tropical Forest Canopy Gaps Analysis (Version 0.1.7)

2018
GGUM: Generalized Graded Unfolding Model (Version 0.5)

2018
GNAR: Methods for Fitting Network Time Series Models (Version 1.1.4)

2018
GeneNMF: Non-Negative Matrix Factorization for Single-Cell Omics (Version 0.6.0)

2024
Hmisc: Harrell Miscellaneous (Version 5.2-0)

2003
IOHanalyzer: Data Analysis Part of 'IOHprofiler' (Version 0.1.8.10)

2019
LDATS: Latent Dirichlet Allocation Coupled with Time Series Analyses (Version 0.3.0)

2019
MRG: Create Non-Confidential Multi-Resolution Grids (Version 0.3.1)

2024
MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis (Version 0.10.1)

2024
Ostats: O-Stats, or Pairwise Community-Level Niche Overlap Statistics (Version 0.2.0)

2021
PERK: Predicting Environmental Concentration and Risk (Version 0.0.9.2)

2023
PheVis: Automatic Phenotyping of Electronic Health Record at Visit Resolution (Version 1.0.4)

2021
Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)

2021
RGAN: Generative Adversarial Nets (GAN) in R (Version 0.1.1)

2022
RcmdrPlugin.BiclustGUI: 'Rcmdr' Plug-in GUI for Biclustering (Version 1.1.3.1)

2016
RelDists: Estimation for some Reliability Distributions (Version 1.0.0)

2022
RprobitB: Bayesian Probit Choice Modeling (Version 1.1.4)

2021
SCpubr: Generate Publication Ready Visualizations of Single Cell Transcriptomics Data (Version 2.0.2)

2022
SEAHORS: Spatial Exploration of ArcHaeological Objects in R Shiny (Version 1.8.0)

2023
SFSI: Sparse Family and Selection Index (Version 1.4.1)

2021
SIBER: Stable Isotope Bayesian Ellipses in R (Version 2.1.9)

2015
SPARSEMODr: SPAtial Resolution-SEnsitive Models of Outbreak Dynamics (Version 1.2.0)

2020
SPUTNIK: Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit (Version 1.4.2)

2018
SRTsim: Simulator for Spatially Resolved Transcriptomics (Version 0.99.7)

2022
SUMMER: Small-Area-Estimation Unit/Area Models and Methods for Estimation in R (Version 1.4.0)

2017
SimSurvey: Test Surveys by Simulating Spatially-Correlated Populations (Version 0.1.6)

2020
SleepCycles: Sleep Cycle Detection (Version 1.1.4)

2020
TSstudio: Functions for Time Series Analysis and Forecasting (Version 0.1.7)

2018
UnalR: Una implementación de funciones de uso interno (Version 1.0.0)

2024
VDSM: Visualization of Distribution of Selected Model (Version 0.1.1)

2021
WINS: The R WINS Package (Version 1.4.2)

2021
WaverideR: Extracting Signals from Wavelet Spectra (Version 0.3.2)

2023
aweSOM: Interactive Self-Organizing Maps (Version 1.3)

2021
baRulho: Quantifying (Animal) Sound Degradation (Version 2.1.2)

2020
bangladesh: Provides Ready to Use Shapefiles for Geographical Map of Bangladesh (Version 1.0.0)

2022
bayesmove: Non-Parametric Bayesian Analyses of Animal Movement (Version 0.2.1)

2020
bayesvl: Visually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan' (Version 0.8.5)

2019
behaviorchange: Tools for Behavior Change Researchers and Professionals (Version 0.5.5)

2018
bioRad: Biological Analysis and Visualization of Weather Radar Data (Version 0.8.1)

2018
c3: 'C3.js' Chart Library (Version 0.3.0)

2018
catmaply: Heatmap for Categorical Data using 'plotly' (Version 0.9.4)

2020
cellpypes: Cell Type Pipes for Single-Cell RNA Sequencing Data (Version 0.3.0)

2022
chronicle: Grammar for Creating R Markdown Reports (Version 0.3)

2021
circlesplot: Visualize Proportions with Circles in a Plot (Version 1.1.0)

2024
clusEvol: A Procedure for Cluster Evolution Analytics (Version 1.0.0)

2024
clustMD: Model Based Clustering for Mixed Data (Version 1.2.1)

2014
clustree: Visualise Clusterings at Different Resolutions (Version 0.5.1)

2018
coloc: Colocalisation Tests of Two Genetic Traits (Version 5.2.3)

2012
colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes (Version 2.1-1)

2005
cophescan: Adaptation of the Coloc Method for PheWAS (Version 1.4.1)

2023
corHMM: Hidden Markov Models of Character Evolution (Version 2.8)

2013
cosimmr: Fast Fitting of Stable Isotope Mixing Models with Covariates (Version 1.0.12)

2024
countland: Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq (Version 0.1.2)

2022
countries: Deal with Country Data in an Easy Way (Version 1.2.0)

2023
ctpm: Continuous-Time Phylogenetic Modeling (Version 1.0.1)

2021
cylcop: Circular-Linear Copulas with Angular Symmetry for Movement Data (Version 0.2.0)

2021
cytometree: Automated Cytometry Gating and Annotation (Version 2.0.2)

2017
dartR.base: Analysing 'SNP' and 'Silicodart' Data - Basic Functions (Version 0.98)

2023
dartR.popgen: Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 1.0.0)

2023
dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.7)

2017
dendextend: Extending 'dendrogram' Functionality in R (Version 1.18.1)

2014
dendroTools: Linear and Nonlinear Methods for Analyzing Daily and Monthly Dendroclimatological Data (Version 1.2.13)

2017
diffudist: Diffusion Distance for Complex Networks (Version 1.0.1)

2021
dissever: Spatial Downscaling using the Dissever Algorithm (Version 0.2-3)

2017
distantia: Assessing Dissimilarity Between Multivariate Time Series (Version 1.0.2)

2019
dlim: Distributed Lag Interaction Model (Version 0.1.0)

2024
dynaSpec: Dynamic Spectrogram Visualizations (Version 1.0.2)

2020
dynamicSDM: Species Distribution and Abundance Modelling at High Spatio-Temporal Resolution (Version 1.3.4)

2023
dyngen: A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses (Version 1.0.5)

2020
eSDM: Ensemble Tool for Predictions from Species Distribution Models (Version 0.4.4)

2019
eclust: Environment Based Clustering for Interpretable Predictive Models in High Dimensional Data (Version 0.1.0)

2017
ecochange: Integrating Ecosystem Remote Sensing Products to Derive EBV Indicators (Version 2.9.3.2)

2020
ecorest: Conducts Analyses Informing Ecosystem Restoration Decisions (Version 2.0.0)

2020
ecotraj: Ecological Trajectory Analysis (Version 0.1.1)

2021
ecr: Evolutionary Computation in R (Version 2.1.1)

2016
eemR: Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data (Version 1.0.1)

2015
eesim: Simulate and Evaluate Time Series for Environmental Epidemiology (Version 0.1.0)

2017
effectR: Predicts Oomycete Effectors (Version 1.0.2)

2018
eiExpand: Utilities for Expanding Functionality of 'eiCompare' (Version 1.0.5)

2023
escalation: A Modular Approach to Dose-Finding Clinical Trials (Version 0.1.10)

2020
extras: Helper Functions for Bayesian Analyses (Version 0.7.3)

2020
fastai: Interface to 'fastai' (Version 2.2.2)

2020
fbst: The Full Bayesian Evidence Test, Full Bayesian Significance Test and the e-Value (Version 2.2)

2020
fishRman: The Fisheries Scientist's Toolbox (Version 1.2.3)

2023
fitODBOD: Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD (Version 1.5.3)

2018
fitbitViz: 'Fitbit' Visualizations (Version 1.0.6)

2021
foodingraph: Food Network Inference and Visualization (Version 0.1.0)

2019
forestr: Ecosystem and Canopy Structural Complexity Metrics from LiDAR (Version 2.0.2)

2018
fsbrain: Managing and Visualizing Brain Surface Data (Version 0.5.5)

2019
funspace: Creating and Representing Functional Trait Spaces (Version 0.2.2)

2023
gamblers.ruin.gameplay: One-Dimensional Random Walks Through Simulation of the Gambler's Ruin Problem (Version 4.0.5)

2021
gbm.auto: Automated Boosted Regression Tree Modelling and Mapping Suite (Version 2024.10.01)

2021
gbm: Generalized Boosted Regression Models (Version 2.2.2)

2003
geocomplexity: Mitigating Spatial Bias Through Geographical Complexity (Version 0.2.0)

2024
geocmeans: Implementing Methods for Spatial Fuzzy Unsupervised Classification (Version 0.3.4)

2021
geosimilarity: Geographically Optimal Similarity (Version 3.7)

2022
geouy: Geographic Information of Uruguay (Version 0.2.8)

2020
ggScatRidges: Scatter Plot Combined with Ridgelines in 'ggplot2' (Version 0.1.1)

2023
ggblanket: Simplify 'ggplot2' Visualisation (Version 10.0.0)

2022
ggcorset: The Corset Plot (Version 0.5.0)

2022
ggpointdensity: A Cross Between a 2D Density Plot and a Scatter Plot (Version 0.1.0)

2019
ggraph: An Implementation of Grammar of Graphics for Graphs and Networks (Version 2.2.1)

2017
ggside: Side Grammar Graphics (Version 0.3.1)

2021
glmmfields: Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling (Version 0.1.8)

2018
gwpcormapper: Geographically Weighted Partial Correlation Mapper (Version 0.1.3)

2021
heatmaply: Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2' (Version 1.5.0)

2016
heiscore: Score and Plot the Healthy Eating Index from NHANES Data (Version 0.1.4)

2024
hidecan: Create HIDECAN Plots for Visualising Genome-Wide Association Studies and Differential Expression Results (Version 1.1.0)

2023
hierarchicalSets: Set Data Visualization Using Hierarchies (Version 1.0.4)

2016
himach: High Mach Finds Routes for Supersonic Aircraft (Version 0.3.2)

2021
hmer: History Matching and Emulation Package (Version 1.6.0)

2022
httk: High-Throughput Toxicokinetics (Version 2.4.0)

2015
iNZightPlots: Graphical Tools for Exploring Data with 'iNZight' (Version 2.15.3)

2020
industRial: Data, Functions and Support Materials from the Book "industRial Data Science" (Version 0.1.0)

2021
inferCSN: Inferring Cell-Specific Gene Regulatory Network (Version 1.0.8)

2023
intSDM: Reproducible Integrated Species Distribution Models Across Norway using 'INLA' (Version 2.1.0)

2022
intensitynet: Intensity Analysis of Spatial Point Patterns on Complex Networks (Version 1.4.0)

2022
kpcaIG: Variables Interpretability with Kernel PCA (Version 1.0)

2024
lineartestr: Linear Specification Testing (Version 1.0.0)

2020
localboot: Local Bootstrap Methods for Various Networks (Version 0.9.2)

2023
loewesadditivity: Loewe's Additivity (Version 0.1.0)

2020
marqLevAlg: A Parallelized General-Purpose Optimization Based on Marquardt-Levenberg Algorithm (Version 2.0.8)

2012
mcMST: A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem (Version 1.1.1)

2017
memoria: Quantifying Ecological Memory in Palaeoecological Datasets and Other Long Time-Series (Version 1.0.0)

2019
metR: Tools for Easier Analysis of Meteorological Fields (Version 0.16.0)

2018
metaGE: Meta-Analysis for Detecting Genotype x Environment Associations (Version 1.1.0)

2023
mgcViz: Visualisations for Generalized Additive Models (Version 0.1.11)

2018
mlr3torch: Deep Learning with 'mlr3' (Version 0.1.2)

2024
mlr3viz: Visualizations for 'mlr3' (Version 0.10.0)

2020
moderndive: Tidyverse-Friendly Introductory Linear Regression (Version 0.7.0)

2018
movegroup: Visualizing and Quantifying Space Use Data for Groups of Animals (Version 2024.03.05)

2024
mpactr: Correction of Preprocessed MS Data (Version 0.1.0)

2024
multiplestressR: Additive and Multiplicative Null Models for Multiple Stressor Data (Version 0.1.1)

2021
myClim: Microclimatic Data Processing (Version 1.3.0)

2023
nandb: Number and Brightness Image Analysis (Version 2.1.0)

2017
naniar: Data Structures, Summaries, and Visualisations for Missing Data (Version 1.1.0)

2017
neatStats: Neat and Painless Statistical Reporting (Version 1.13.3)

2020
nichetools: Complementary Package to 'nicheROVER' and 'SIBER' (Version 0.3.2)

2024
noaastormevents: Explore NOAA Storm Events Database (Version 0.2.0)

2017
nosoi: A Forward Agent-Based Transmission Chain Simulator (Version 1.1.2)

2020
nullabor: Tools for Graphical Inference (Version 0.3.12)

2011
occCite: Querying and Managing Large Biodiversity Occurrence Datasets (Version 0.5.9)

2020
ohun: Optimizing Acoustic Signal Detection (Version 1.0.2)

2022
palr: Colour Palettes for Data (Version 0.4.0)

2015
pcvr: Plant Phenotyping and Bayesian Statistics (Version 1.1.1.0)

2024
pdSpecEst: An Analysis Toolbox for Hermitian Positive Definite Matrices (Version 1.2.4)

2017
permutes: Permutation Tests for Time Series Data (Version 2.8)

2018
platetools: Tools and Plots for Multi-Well Plates (Version 0.1.7)

2016
plotdap: Easily Visualize Data from 'ERDDAP' Servers via the 'rerddap' Package (Version 1.0.3)

2019
prior3D: 3D Prioritization Algorithm (Version 0.1.2)

2024
prioriactions: Multi-Action Conservation Planning (Version 0.5.0)

2021
promor: Proteomics Data Analysis and Modeling Tools (Version 0.2.1)

2022
qreport: Statistical Reporting with 'Quarto' (Version 1.0-1)

2023
quadcleanR: Cleanup and Visualization of Quadrat Data (Version 1.1.0)

2022
rKOMICS: Minicircle Sequence Classes (MSC) Analyses (Version 1.3)

2021
rSPDE: Rational Approximations of Fractional Stochastic Partial Differential Equations (Version 2.3.3)

2019
rTLsDeep: Post-Hurricane Damage Severity Classification from TLS and AI (Version 0.0.5)

2023
rangeMapper: A Platform for the Study of Macro-Ecology of Life History Traits (Version 2.0.3)

2010
rankinPlot: Convenient Plotting for the Modified Rankin Scale and Other Ordinal Outcome Data (Version 1.1.0)

2022
rasterdiv: Diversity Indices for Numerical Matrices (Version 0.3.6)

2020
ratlas: ATLAS Formatting Functions and Templates (Version 0.1.0)

2024
rayshader: Create Maps and Visualize Data in 2D and 3D (Version 0.37.3)

2018
rcontroll: Individual-Based Forest Growth Simulator 'TROLL' (Version 0.1.2)

2023
reinsureR: Reinsurance Treaties Application (Version 0.1.0)

2018
rfars: Download and Analyze Crash Data (Version 1.2.0)

2022
riverconn: Fragmentation and Connectivity Indices for Riverscapes (Version 0.3.31)

2022
rliger: Linked Inference of Genomic Experimental Relationships (Version 2.1.0)

2021
rmweather: Tools to Conduct Meteorological Normalisation and Counterfactual Modelling for Air Quality Data (Version 0.2.6)

2018
rnnmf: Regularized Non-Negative Matrix Factorization (Version 0.3.0)

2024
roads: Road Network Projection (Version 1.2.0)

2022
rwty: R We There Yet? Visualizing MCMC Convergence in Phylogenetics (Version 1.0.2)

2016
sampbias: Evaluating Geographic Sampling Bias in Biological Collections (Version 2.0.0)

2024
scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing (Version 2.1.2)

2022
scUtils: Utility Functions for Single-Cell RNA Sequencing Data (Version 0.1.0)

2020
semtree: Recursive Partitioning for Structural Equation Models (Version 0.9.20)

2016
simmr: A Stable Isotope Mixing Model (Version 0.5.1.217)

2015
skpr: Design of Experiments Suite: Generate and Evaluate Optimal Designs (Version 1.7.1)

2017
spatialRF: Easy Spatial Modeling with Random Forest (Version 1.1.4)

2021
spatialrisk: Calculating Spatial Risk (Version 0.7.1)

2018
spbabel: Convert Spatial Data Using Tidy Tables (Version 0.6.0)

2016
spectralAnalysis: Pre-Process, Visualize and Analyse Spectral Data (Version 4.3.3)

2018
spectralGraphTopology: Learning Graphs from Data via Spectral Constraints (Version 0.2.3)

2019
sptotal: Predicting Totals and Weighted Sums from Spatial Data (Version 1.0.1)

2020
stacomiR: Fish Migration Monitoring (Version 0.6.1)

2017
stars: Spatiotemporal Arrays, Raster and Vector Data Cubes (Version 0.6-7)

2018
starvz: R-Based Visualization Techniques for Task-Based Applications (Version 0.8.2)

2020
statebins: Create United States Uniform Cartogram Heatmaps (Version 1.4.0)

2014
sugarglider: Create Glyph-Maps of Spatiotemporal Data (Version 1.0.3)

2024
sugrrants: Supporting Graphs for Analysing Time Series (Version 0.2.9)

2017
surveyvoi: Survey Value of Information (Version 1.0.6)

2021
tcpl: ToxCast Data Analysis Pipeline (Version 3.2.0)

2016
tectonicr: Analyzing the Orientation of Maximum Horizontal Stress (Version 0.4.0)

2023
tidyHeatmap: A Tidy Implementation of Heatmap (Version 1.8.1)

2020
tidygate: Interactively Gate Points (Version 1.0.14)

2020
tidyjson: Tidy Complex 'JSON' (Version 0.3.2)

2015
torchaudio: R Interface to 'pytorch”s 'torchaudio' (Version 0.3.1)

2021
trip: Tracking Data (Version 1.10.0)

2006
troopdata: Tools for Analyzing Cross-National Military Deployment and Basing Data (Version 1.0.2)

2021
tsdataleaks: Exploit Data Leakages in Time Series Forecasting Competitions (Version 2.1.1)

2024
ufs: A Collection of Utilities (Version 0.5.12)

2018
umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers (Version 1.0.0)

2021
virtualPollen: Simulating Pollen Curves from Virtual Taxa with Different Life and Niche Traits (Version 1.0.1)

2019
virtualspecies: Generation of Virtual Species Distributions (Version 1.6)

2014
wacolors: Colorblind-Friendly Palettes from Washington State (Version 0.3.1)

2021
warbleR: Streamline Bioacoustic Analysis (Version 1.1.32)

2015
whoa: Evaluation of Genotyping Error in Genotype-by-Sequencing Data (Version 0.0.2)

2019
wilson: Web-Based Interactive Omics Visualization (Version 2.4.2)

2018
wingen: Continuous Mapping of Genetic Diversity (Version 2.1.2)

2024
wqspt: Permutation Test for Weighted Quantile Sum Regression (Version 1.0.1)

2023
xadmix: Subsetting and Plotting Optimized for Admixture Data (Version 1.0.0)

2022

RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN). Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.

rpkg.net © 2022 - 2024 Obi Obianom