R Package Scholar
26,502

viridis: Colorblind-Friendly Color Maps for R

Simon Garnier • Noam Ross • Bob Rudis • Marco Sciaini • Antônio Pedro Camargo • Cédric Scherer •  View description and downloads View dependencies GitHub project

2015 Published
0.6.5 Version
0 Citations
6 Authors
Referenced by ⇅ Year
CIDER: Meta-Clustering for Single-Cell Data Integration and Evaluation (Version 0.99.1)

 		2021
crestr: A Probabilistic Approach to Reconstruct Past Climates Using Palaeoecological Datasets (Version 1.2.1)

 		2021
CSFA: Connectivity Scores with Factor Analysis (Version 1.2.0)

 		2018
ergmclust: ERGM-Based Network Clustering (Version 1.0.0)

 		2021
leri: Access Landscape Evaporative Response Index Raster Data (Version 0.0.1)

 		2019
mobirep: Models Bivariate Dependence and Produces Bivariate Return Periods (Version 0.2.3)

 		2021
simplevis: Wrappers to Simplify Beautiful "ggplot2" and "leaflet" Visualisation (Version 7.1.0)

 		2020
StratifiedSampling: Different Methods for Stratified Sampling (Version 0.4.1)

 		2021
xQTLbiolinks: Integrative Analysis of Quantitative Trait Locus Data of "xQTL" (Version 1.6.2)

 		2022
yaps: Track Estimation using YAPS (Yet Another Positioning Solver) (Version 1.2.5)

 		2021
fCWTr: Fast Continuous Wavelet Transform (Version 0.2.1)

 		2024
eemR: Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data (Version 1.0.1)

 		2015
eesim: Simulate and Evaluate Time Series for Environmental Epidemiology (Version 0.1.0)

 		2017
effectR: Predicts Oomycete Effectors (Version 1.0.2)

 		2018
eiExpand: Utilities for Expanding Functionality of 'eiCompare' (Version 1.0.5)

 		2023
ARPobservation: Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes (Version 1.2.2)

 		2014
BNPdensity: Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures (Version 2023.3.8)

 		2011
BSTZINB: Association Among Disease Counts and Socio-Environmental Factors (Version 1.0.1)

 		0
BiBitR: R Wrapper for Java Implementation of BiBit (Version 0.3.1)

 		2016
BioM2: Biologically Explainable Machine Learning Framework (Version 1.1.0)

 		2023
CAST: 'caret' Applications for Spatial-Temporal Models (Version 1.0.2)

 		2018
CINNA: Deciphering Central Informative Nodes in Network Analysis (Version 1.2.2)

 		2017
CoordinateCleaner: Automated Cleaning of Occurrence Records from Biological Collections (Version 3.0.1)

 		2017
DIGSS: Determination of Intervals Using Georeferenced Survey Simulation (Version 1.0.2)

 		2021
DSjobtracker: What Skills and Qualifications are Required for Data Science Related Jobs? (Version 2.0.0)

 		2020
DataVisualizations: Visualizations of High-Dimensional Data (Version 1.3.2)

 		2018
EHRtemporalVariability: Delineating Temporal Dataset Shifts in Electronic Health Records (Version 1.2.1)

 		2019
ENMTools: Analysis of Niche Evolution using Niche and Distribution Models (Version 1.1.2)

 		2020
FFdownload: Download Data from Kenneth French's Website (Version 1.1.1)

 		2020
FielDHub: A Shiny App for Design of Experiments in Life Sciences (Version 1.4.2)

 		2021
ForestGapR: Tropical Forest Canopy Gaps Analysis (Version 0.1.7)

 		2018
GGUM: Generalized Graded Unfolding Model (Version 0.5)

 		2018
GNAR: Methods for Fitting Network Time Series Models (Version 1.1.4)

 		2018
GeneNMF: Non-Negative Matrix Factorization for Single-Cell Omics (Version 0.6.0)

 		2024
Hmisc: Harrell Miscellaneous (Version 5.1-3)

 		2003
IOHanalyzer: Data Analysis Part of 'IOHprofiler' (Version 0.1.8.10)

 		2019
LDATS: Latent Dirichlet Allocation Coupled with Time Series Analyses (Version 0.3.0)

 		2019
MOSS: Multi-Omic Integration via Sparse Singular Value Decomposition (Version 0.2.2)

 		2021
MRG: Create Non-Confidential Multi-Resolution Grids (Version 0.2.14)

 		2024
MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis (Version 0.10.1)

 		2024
Ostats: O-Stats, or Pairwise Community-Level Niche Overlap Statistics (Version 0.2.0)

 		2021
PERK: Predicting Environmental Concentration and Risk (Version 0.0.9.2)

 		2023
PheVis: Automatic Phenotyping of Electronic Health Record at Visit Resolution (Version 1.0.4)

 		2021
Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)

 		2021
RGAN: Generative Adversarial Nets (GAN) in R (Version 0.1.1)

 		2022
RcmdrPlugin.BiclustGUI: 'Rcmdr' Plug-in GUI for Biclustering (Version 1.1.3.1)

 		2016
RelDists: Estimation for some Reliability Distributions (Version 1.0.0)

 		2022
RprobitB: Bayesian Probit Choice Modeling (Version 1.1.4)

 		2021
SCpubr: Generate Publication Ready Visualizations of Single Cell Transcriptomics Data (Version 2.0.2)

 		2022
SEAHORS: Spatial Exploration of ArcHaeological Objects in R Shiny (Version 1.8.0)

 		2023
SFSI: Sparse Family and Selection Index (Version 1.4.1)

 		2021
SIBER: Stable Isotope Bayesian Ellipses in R (Version 2.1.9)

 		2016
SPARSEMODr: SPAtial Resolution-SEnsitive Models of Outbreak Dynamics (Version 1.2.0)

 		2021
SPUTNIK: Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit (Version 1.4.2)

 		2018
SRTsim: Simulator for Spatially Resolved Transcriptomics (Version 0.99.7)

 		2022
SUMMER: Small-Area-Estimation Unit/Area Models and Methods for Estimation in R (Version 1.4.0)

 		2017
SimSurvey: Test Surveys by Simulating Spatially-Correlated Populations (Version 0.1.6)

 		2020
SleepCycles: Sleep Cycle Detection (Version 1.1.4)

 		2020
TSstudio: Functions for Time Series Analysis and Forecasting (Version 0.1.7)

 		2018
UnalR: Una implementación de funciones de uso interno (Version 1.0.0)

 		2024
VDSM: Visualization of Distribution of Selected Model (Version 0.1.1)

 		2021
WINS: The R WINS Package (Version 1.4.2)

 		2021
WaverideR: Extracting Signals from Wavelet Spectra (Version 0.3.2)

 		2023
aweSOM: Interactive Self-Organizing Maps (Version 1.3)

 		2021
baRulho: Quantifying (Animal) Sound Degradation (Version 2.1.2)

 		2020
bangladesh: Provides Ready to Use Shapefiles for Geographical Map of Bangladesh (Version 1.0.0)

 		2022
bayesmove: Non-Parametric Bayesian Analyses of Animal Movement (Version 0.2.1)

 		2020
bayesvl: Visually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan' (Version 0.8.5)

 		2019
behaviorchange: Tools for Behavior Change Researchers and Professionals (Version 0.5.5)

 		2018
bioRad: Biological Analysis and Visualization of Weather Radar Data (Version 0.8.1)

 		2018
c3: 'C3.js' Chart Library (Version 0.3.0)

 		2018
catmaply: Heatmap for Categorical Data using 'plotly' (Version 0.9.4)

 		2020
cellpypes: Cell Type Pipes for Single-Cell RNA Sequencing Data (Version 0.3.0)

 		2022
chronicle: Grammar for Creating R Markdown Reports (Version 0.3)

 		2021
circlesplot: Visualize Proportions with Circles in a Plot (Version 1.1.0)

 		2024
clusEvol: A Procedure for Cluster Evolution Analytics (Version 1.0.0)

 		2024
clustMD: Model Based Clustering for Mixed Data (Version 1.2.1)

 		2014
clustree: Visualise Clusterings at Different Resolutions (Version 0.5.1)

 		2018
coloc: Colocalisation Tests of Two Genetic Traits (Version 5.2.3)

 		2012
colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes (Version 2.1-1)

 		2005
cophescan: Adaptation of the Coloc Method for PheWAS (Version 1.4.1)

 		2023
corHMM: Hidden Markov Models of Character Evolution (Version 2.8)

 		2013
cosimmr: Fast Fitting of Stable Isotope Mixing Models with Covariates (Version 1.0.12)

 		2024
countland: Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq (Version 0.1.2)

 		2022
countries: Deal with Country Data in an Easy Way (Version 1.2.0)

 		2023
ctpm: Continuous-Time Phylogenetic Modeling (Version 1.0.1)

 		2021
cylcop: Circular-Linear Copulas with Angular Symmetry for Movement Data (Version 0.2.0)

 		2021
cytometree: Automated Cytometry Gating and Annotation (Version 2.0.2)

 		2017
dartR.base: Analysing 'SNP' and 'Silicodart' Data - Basic Functions (Version 0.98)

 		2023
dartR.popgen: Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 1.0.0)

 		2023
dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.7)

 		2017
dendextend: Extending 'dendrogram' Functionality in R (Version 1.18.1)

 		2014
dendroTools: Linear and Nonlinear Methods for Analyzing Daily and Monthly Dendroclimatological Data (Version 1.2.13)

 		2017
diffudist: Diffusion Distance for Complex Networks (Version 1.0.1)

 		2021
dissever: Spatial Downscaling using the Dissever Algorithm (Version 0.2-3)

 		2017
distantia: Assessing Dissimilarity Between Multivariate Time Series (Version 1.0.2)

 		2019
dlim: Distributed Lag Interaction Model (Version 0.1.0)

 		2024
dynaSpec: Dynamic Spectrogram Visualizations (Version 1.0.2)

 		2020
dynamicSDM: Species Distribution and Abundance Modelling at High Spatio-Temporal Resolution (Version 1.3.4)

 		2023
dyngen: A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses (Version 1.0.5)

 		2020
eSDM: Ensemble Tool for Predictions from Species Distribution Models (Version 0.4.4)

 		2019
eclust: Environment Based Clustering for Interpretable Predictive Models in High Dimensional Data (Version 0.1.0)

 		2017
ecorest: Conducts Analyses Informing Ecosystem Restoration Decisions (Version 2.0.0)

 		2020
ecochange: Integrating Ecosystem Remote Sensing Products to Derive EBV Indicators (Version 2.9.3.2)

 		2020
ecr: Evolutionary Computation in R (Version 2.1.1)

 		2016
ecotraj: Ecological Trajectory Analysis (Version 0.1.1)

 		2021
escalation: A Modular Approach to Dose-Finding Clinical Trials (Version 0.1.10)

 		2020
extras: Helper Functions for Bayesian Analyses (Version 0.7.3)

 		2020
fastai: Interface to 'fastai' (Version 2.2.2)

 		2020
fbst: The Full Bayesian Evidence Test, Full Bayesian Significance Test and the e-Value (Version 2.2)

 		2020
fishRman: The Fisheries Scientist's Toolbox (Version 1.2.3)

 		2023
fitODBOD: Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD (Version 1.5.3)

 		2018
fitbitViz: 'Fitbit' Visualizations (Version 1.0.6)

 		2021
foodingraph: Food Network Inference and Visualization (Version 0.1.0)

 		2019
forestr: Ecosystem and Canopy Structural Complexity Metrics from LiDAR (Version 2.0.2)

 		2018
fsbrain: Managing and Visualizing Brain Surface Data (Version 0.5.5)

 		2019
funspace: Creating and Representing Functional Trait Spaces (Version 0.2.2)

 		2023
gamblers.ruin.gameplay: One-Dimensional Random Walks Through Simulation of the Gambler's Ruin Problem (Version 4.0.5)

 		2021
gbm.auto: Automated Boosted Regression Tree Modelling and Mapping Suite (Version 2024.10.01)

 		2021
gbm: Generalized Boosted Regression Models (Version 2.2.2)

 		2003
geocomplexity: Mitigating Spatial Bias Through Geographical Complexity (Version 0.2.0)

 		2024
geocmeans: Implementing Methods for Spatial Fuzzy Unsupervised Classification (Version 0.3.4)

 		2021
geosimilarity: Geographically Optimal Similarity (Version 3.7)

 		2022
geouy: Geographic Information of Uruguay (Version 0.2.8)

 		2020
ggScatRidges: Scatter Plot Combined with Ridgelines in 'ggplot2' (Version 0.1.1)

 		2023
ggblanket: Simplify 'ggplot2' Visualisation (Version 10.0.0)

 		2022
ggcorset: The Corset Plot (Version 0.5.0)

 		2022
ggpointdensity: A Cross Between a 2D Density Plot and a Scatter Plot (Version 0.1.0)

 		2019
ggraph: An Implementation of Grammar of Graphics for Graphs and Networks (Version 2.2.1)

 		2017
ggside: Side Grammar Graphics (Version 0.3.1)

 		2021
glmmfields: Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling (Version 0.1.8)

 		2018
gwpcormapper: Geographically Weighted Partial Correlation Mapper (Version 0.1.3)

 		2021
heatmaply: Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2' (Version 1.5.0)

 		2016
heiscore: Score and Plot the Healthy Eating Index from NHANES Data (Version 0.1.4)

 		2024
hidecan: Create HIDECAN Plots for Visualising Genome-Wide Association Studies and Differential Expression Results (Version 1.1.0)

 		2023
hierarchicalSets: Set Data Visualization Using Hierarchies (Version 1.0.4)

 		2016
himach: High Mach Finds Routes for Supersonic Aircraft (Version 0.3.2)

 		2021
hmer: History Matching and Emulation Package (Version 1.6.0)

 		2022
httk: High-Throughput Toxicokinetics (Version 2.4.0)

 		2015
iNZightPlots: Graphical Tools for Exploring Data with 'iNZight' (Version 2.15.3)

 		2020
idmodelr: Infectious Disease Model Library and Utilities (Version 0.4.0)

 		2019
industRial: Data, Functions and Support Materials from the Book "industRial Data Science" (Version 0.1.0)

 		2021
inferCSN: Inferring Cell-Specific Gene Regulatory Network (Version 1.0.8)

 		2023
intSDM: Reproducible Integrated Species Distribution Models Across Norway using 'INLA' (Version 2.1.0)

 		2022
intensitynet: Intensity Analysis of Spatial Point Patterns on Complex Networks (Version 1.4.0)

 		2022
kpcaIG: Variables Interpretability with Kernel PCA (Version 1.0)

 		2024
lineartestr: Linear Specification Testing (Version 1.0.0)

 		2020
localboot: Local Bootstrap Methods for Various Networks (Version 0.9.2)

 		2023
loewesadditivity: Loewe's Additivity (Version 0.1.0)

 		2020
marqLevAlg: A Parallelized General-Purpose Optimization Based on Marquardt-Levenberg Algorithm (Version 2.0.8)

 		2012
mcMST: A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem (Version 1.1.1)

 		2017
memoria: Quantifying Ecological Memory in Palaeoecological Datasets and Other Long Time-Series (Version 1.0.0)

 		2019
metR: Tools for Easier Analysis of Meteorological Fields (Version 0.16.0)

 		2018
metaGE: Meta-Analysis for Detecting Genotype x Environment Associations (Version 1.1.0)

 		2023
mgcViz: Visualisations for Generalized Additive Models (Version 0.1.11)

 		2018
mlr3torch: Deep Learning with 'mlr3' (Version 0.1.2)

 		2024
mlr3viz: Visualizations for 'mlr3' (Version 0.9.0)

 		2020
moderndive: Tidyverse-Friendly Introductory Linear Regression (Version 0.7.0)

 		2018
movegroup: Visualizing and Quantifying Space Use Data for Groups of Animals (Version 2024.03.05)

 		2024
mpactr: Correction of Preprocessed MS Data (Version 0.1.0)

 		2024
multiplestressR: Additive and Multiplicative Null Models for Multiple Stressor Data (Version 0.1.1)

 		2021
myClim: Microclimatic Data Processing (Version 1.3.0)

 		2023
naniar: Data Structures, Summaries, and Visualisations for Missing Data (Version 1.1.0)

 		2017
nandb: Number and Brightness Image Analysis (Version 2.1.0)

 		2017
neatStats: Neat and Painless Statistical Reporting (Version 1.13.3)

 		2020
nichetools: Complementary Package to 'nicheROVER' and 'SIBER' (Version 0.3.2)

 		2024
noaastormevents: Explore NOAA Storm Events Database (Version 0.2.0)

 		2017
nosoi: A Forward Agent-Based Transmission Chain Simulator (Version 1.1.2)

 		2020
nullabor: Tools for Graphical Inference (Version 0.3.12)

 		2011
occCite: Querying and Managing Large Biodiversity Occurrence Datasets (Version 0.5.8)

 		2020
ohun: Optimizing Acoustic Signal Detection (Version 1.0.2)

 		2022
palr: Colour Palettes for Data (Version 0.4.0)

 		2015
pcvr: Plant Phenotyping and Bayesian Statistics (Version 1.0.0)

 		2024
pdSpecEst: An Analysis Toolbox for Hermitian Positive Definite Matrices (Version 1.2.4)

 		2017
permutes: Permutation Tests for Time Series Data (Version 2.8)

 		2019
platetools: Tools and Plots for Multi-Well Plates (Version 0.1.7)

 		2016
plotdap: Easily Visualize Data from 'ERDDAP' Servers via the 'rerddap' Package (Version 1.0.3)

 		2019
prior3D: 3D Prioritization Algorithm (Version 0.1.1)

 		2024
prioriactions: Multi-Action Conservation Planning (Version 0.5.0)

 		2021
promor: Proteomics Data Analysis and Modeling Tools (Version 0.2.1)

 		2022
qad: Quantification of Asymmetric Dependence (Version 1.0.4)

 		2018
qreport: Statistical Reporting with 'Quarto' (Version 1.0-1)

 		2023
quadcleanR: Cleanup and Visualization of Quadrat Data (Version 1.1.0)

 		2022
rKOMICS: Minicircle Sequence Classes (MSC) Analyses (Version 1.3)

 		2021
rSPDE: Rational Approximations of Fractional Stochastic Partial Differential Equations (Version 2.3.3)

 		2019
rTLsDeep: Post-Hurricane Damage Severity Classification from TLS and AI (Version 0.0.5)

 		2023
rangeMapper: A Platform for the Study of Macro-Ecology of Life History Traits (Version 2.0.3)

 		2010
rankinPlot: Convenient Plotting for the Modified Rankin Scale and Other Ordinal Outcome Data (Version 1.1.0)

 		2022
rasterdiv: Diversity Indices for Numerical Matrices (Version 0.3.5)

 		2020
rayshader: Create Maps and Visualize Data in 2D and 3D (Version 0.37.3)

 		2018
rcontroll: Individual-Based Forest Growth Simulator 'TROLL' (Version 0.1.2)

 		2023
reinsureR: Reinsurance Treaties Application (Version 0.1.0)

 		2018
rfars: Download and Analyze Crash Data (Version 1.2.0)

 		2022
riverconn: Fragmentation and Connectivity Indices for Riverscapes (Version 0.3.31)

 		2022
rliger: Linked Inference of Genomic Experimental Relationships (Version 2.0.1)

 		2021
rmweather: Tools to Conduct Meteorological Normalisation and Counterfactual Modelling for Air Quality Data (Version 0.2.6)

 		2018
roads: Road Network Projection (Version 1.2.0)

 		2022
rwty: R We There Yet? Visualizing MCMC Convergence in Phylogenetics (Version 1.0.2)

 		2016
sampbias: Evaluating Geographic Sampling Bias in Biological Collections (Version 2.0.0)

 		2024
scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing (Version 2.1.2)

 		2022
scUtils: Utility Functions for Single-Cell RNA Sequencing Data (Version 0.1.0)

 		2020
semtree: Recursive Partitioning for Structural Equation Models (Version 0.9.20)

 		2016
simmr: A Stable Isotope Mixing Model (Version 0.5.1.217)

 		2015
skpr: Design of Experiments Suite: Generate and Evaluate Optimal Designs (Version 1.7.1)

 		2017
spatialRF: Easy Spatial Modeling with Random Forest (Version 1.1.4)

 		2021
spatialrisk: Calculating Spatial Risk (Version 0.7.1)

 		2018
spbabel: Convert Spatial Data Using Tidy Tables (Version 0.6.0)

 		2016
spectralAnalysis: Pre-Process, Visualize and Analyse Spectral Data (Version 4.3.3)

 		2018
spectralGraphTopology: Learning Graphs from Data via Spectral Constraints (Version 0.2.3)

 		2019
sptotal: Predicting Totals and Weighted Sums from Spatial Data (Version 1.0.1)

 		2020
stacomiR: Fish Migration Monitoring (Version 0.6.1)

 		2018
stars: Spatiotemporal Arrays, Raster and Vector Data Cubes (Version 0.6-6)

 		2018
starvz: R-Based Visualization Techniques for Task-Based Applications (Version 0.8.2)

 		2020
statebins: Create United States Uniform Cartogram Heatmaps (Version 1.4.0)

 		2014
sugarglider: Create Glyph-Maps of Spatiotemporal Data (Version 1.0.3)

 		2024
sugrrants: Supporting Graphs for Analysing Time Series (Version 0.2.9)

 		2017
surveyvoi: Survey Value of Information (Version 1.0.6)

 		2021
tcpl: ToxCast Data Analysis Pipeline (Version 3.2.0)

 		2018
tectonicr: Analyzing the Orientation of Maximum Horizontal Stress (Version 0.4.0)

 		2023
tidyHeatmap: A Tidy Implementation of Heatmap (Version 1.8.1)

 		2020
tidygate: Interactively Gate Points (Version 1.0.14)

 		2020
tidyjson: Tidy Complex 'JSON' (Version 0.3.2)

 		2015
torchaudio: R Interface to 'pytorch”s 'torchaudio' (Version 0.3.1)

 		2021
trip: Tracking Data (Version 1.10.0)

 		2006
troopdata: Tools for Analyzing Cross-National Military Deployment and Basing Data (Version 1.0.2)

 		2021
tsdataleaks: Exploit Data Leakages in Time Series Forecasting Competitions (Version 2.1.1)

 		2024
ufs: A Collection of Utilities (Version 0.5.12)

 		2018
umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers (Version 1.0.0)

 		2021
virtualPollen: Simulating Pollen Curves from Virtual Taxa with Different Life and Niche Traits (Version 1.0.1)

 		2019
virtualspecies: Generation of Virtual Species Distributions (Version 1.6)

 		2014
wacolors: Colorblind-Friendly Palettes from Washington State (Version 0.3.1)

 		2021
warbleR: Streamline Bioacoustic Analysis (Version 1.1.32)

 		2015
whoa: Evaluation of Genotyping Error in Genotype-by-Sequencing Data (Version 0.0.2)

 		2019
wilson: Web-Based Interactive Omics Visualization (Version 2.4.2)

 		2018
wingen: Continuous Mapping of Genetic Diversity (Version 2.1.2)

 		2024
wqspt: Permutation Test for Weighted Quantile Sum Regression (Version 1.0.1)

 		2023
xadmix: Subsetting and Plotting Optimized for Admixture Data (Version 1.0.0)

 		2022

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