Referenced by ⇅
Year
bcp : Bayesian Analysis of Change Point Problems (Version 4.0.3)
2006
biogeo : Point Data Quality Assessment and Coordinate Conversion (Version 1.0)
2016
biosurvey : Tools for Biological Survey Planning (Version 0.1.1)
2021
cassandRa : Finds Missing Links and Metric Confidence Intervals in
Ecological Bipartite Networks (Version 0.1.0)
2019
CommEcol : Community Ecology Analyses (Version 1.7.1)
2016
dave : Functions for "Data Analysis in Vegetation Ecology" (Version 2.0)
2013
DiversityOccupancy : Building Diversity Models from Multiple Species Occupancy Models (Version 1.0.6)
2016
fieldRS : Remote Sensing Field Work Tools (Version 0.2.3)
2018
HierDpart : Partitioning Hierarchical Diversity and Differentiation Across
Metrics and Scales, from Genes to Ecosystems (Version 1.5.0)
2018
liayson : Linking Singe-Cell Transcriptomes Atween Contemporary
Subpopulation Genomes (Version 1.0.5)
2018
MapeBay : Multivariate Analysis of Variance Panel, PERMANOVA and Bayesian (Version 0.1.0)
2021
MEDITS : Analysis of MEDITS-Like Survey Data (Version 0.1.7)
2019
netcom : NETwork COMparison Inference (Version 2.1.6)
2017
propr : Calculating Proportionality Between Vectors of Compositional
Data (Version 4.2.6)
2016
Rarefy : Rarefaction Methods (Version 1.1.1)
2020
rich : Computes and Compares Species Richnesses (Version 1.0.1)
2011
Rtapas : Random Tanglegram Partitions (Version 1.1)
2022
DivInsight : Diversity Index Calculation & Visualisation for Taxa and
Location (Version 0.1.0)
2023
BioTIMEr : Tools to Use and Explore the "BioTIME" Database (Version 0.2.2)
2024
AICcPermanova : Model Selection of PERMANOVA Models Using AICc (Version 0.0.2)
2023
AlleleShift : Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change (Version 1.1-2)
2021
Arothron : Geometric Morphometric Methods and Virtual Anthropology Tools (Version 2.0.5)
2018
BAT : Biodiversity Assessment Tools (Version 2.9.6)
2014
BBI : Benthic Biotic Indices Calculation from Composition Data (Version 0.3.0)
2018
BiodiversityR : Package for Community Ecology and Suitability Analysis (Version 2.16-1)
2007
CNVRG : Dirichlet Multinomial Modeling of Relative Abundance Data (Version 1.0.0)
2020
CoreMicrobiomeR : Identification of Core Microbiome (Version 0.1.0)
2024
DIscBIO : A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics (Version 1.2.2)
2020
DarkDiv : Estimating Dark Diversity and Site-Specific Species Pools (Version 0.3.0)
2019
EcoIndR : Ecological Indicators (Version 2.0)
2017
EcotoneFinder : Characterising and Locating Ecotones and Communities (Version 0.2.3)
2020
EvaluateCore : Quality Evaluation of Core Collections (Version 0.1.3)
2020
FD : Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology (Version 1.0-12.3)
2009
FreeSortR : Free Sorting Data Analysis (Version 1.3)
2014
GABB : Facilitation of Data Preparation and Plotting Procedures for RDA and PCA Analyses (Version 0.3.8)
2023
GCalignR : Simple Peak Alignment for Gas-Chromatography Data (Version 1.0.6)
2017
GOCompare : Comprehensive GO Terms Comparison Between Species (Version 1.0.2.1)
2021
GRNNs : General Regression Neural Networks Package (Version 0.1.0)
2021
GUniFrac : Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis (Version 1.8)
2012
HMP : Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP (Version 2.0.1)
2011
HTSSIP : High Throughput Sequencing of Stable Isotope Probing Data Analysis (Version 1.4.1)
2016
HybridMicrobiomes : Analysis of Host-Associated Microbiomes from Hybrid Organisms (Version 0.1.1)
2023
KnowBR : Discriminating Well Surveyed Spatial Units from Exhaustive Biodiversity Databases (Version 2.2)
2017
LDM : Testing Hypotheses About the Microbiome using the Linear Decomposition Model (Version 6.0.1)
2023
MEclustnet : Fit the Mixture of Experts Latent Position Cluster Model to Network Data (Version 1.2.2)
2016
MetaNet : Network Analysis for Omics Data (Version 0.1.2)
2024
MiRKAT : Microbiome Regression-Based Kernel Association Tests (Version 1.2.3)
2018
MiSPU : Microbiome Based Sum of Powered Score (MiSPU) Tests (Version 1.0)
2016
MiscMetabar : Miscellaneous Functions for Metabarcoding Analysis (Version 0.7.10)
2024
Momocs : Morphometrics using R (Version 1.4.1)
2012
MorphoTools2 : Multivariate Morphometric Analysis (Version 1.0.1.1)
2021
NADA2 : Data Analysis for Censored Environmental Data (Version 1.1.6)
2021
NST : Normalized Stochasticity Ratio (Version 3.1.10)
2019
NicheBarcoding : Niche-model-Based Species Identification (Version 1.0)
2021
PCPS : Principal Coordinates of Phylogenetic Structure (Version 1.0.7)
2014
Platypus : Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.5.0)
2021
PolicyPortfolios : Tools for Managing, Measuring and Visualizing Policy Portfolios (Version 0.3)
2021
PopGenReport : A Simple Framework to Analyse Population and Landscape Genetic Data (Version 3.1)
2012
ProcMod : Informative Procrustean Matrix Correlation (Version 1.0.8)
2019
ProjectionBasedClustering : Projection Based Clustering (Version 1.2.1)
2017
QFASA : Quantitative Fatty Acid Signature Analysis (Version 1.2.0)
2016
RPANDA : Phylogenetic ANalyses of DiversificAtion (Version 2.3)
2014
RRphylo : Phylogenetic Ridge Regression Methods for Comparative Studies (Version 2.8.0)
2018
RTCC : Detecting Trait Clustering in Environmental Gradients (Version 0.1.1)
2020
RVAideMemoire : Testing and Plotting Procedures for Biostatistics (Version 0.9-83-7)
2011
RVenn : Set Operations for Many Sets (Version 1.1.0)
2019
RaceID : Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.5)
2018
ReporterScore : Generalized Reporter Score-Based Enrichment Analysis for Omics Data (Version 0.1.4)
2024
Rraven : Connecting R and 'Raven' Sound Analysis Software (Version 1.0.13)
2017
SQMtools : Analyze Results Generated by the 'SqueezeMeta' Pipeline (Version 1.6.3)
2023
SRS : Scaling with Ranked Subsampling (Version 0.2.3)
2020
SSP : Simulated Sampling Procedure for Community Ecology (Version 1.0.1)
2020
SYNCSA : Analysis of Functional and Phylogenetic Patterns in Metacommunities (Version 1.3.4)
2011
SigTree : Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree (Version 1.10.6)
2013
SoundShape : Sound Waves Onto Morphometric Data (Version 1.3.0)
2020
SparseLPM : The Sparse Latent Position Model for Nonnegative Interaction Data (Version 1.0)
2018
TOmicsVis : Transcriptome Visualization Process Scheme (Version 2.0.0)
2023
TaxaNorm : Feature-Wise Normalization for Microbiome Sequencing Data (Version 2.4)
2023
Toothnroll : Dental Tissues Landmarking Measuring and Mapping (Version 1.11)
2024
TraMineR : Trajectory Miner: a Sequence Analysis Toolkit (Version 2.2-9)
2008
WeightedCluster : Clustering of Weighted Data (Version 1.6-4)
2013
Xplortext : Statistical Analysis of Textual Data (Version 1.5.3)
2017
aIc : Testing for Compositional Pathologies in Datasets (Version 1.0)
2022
aPCoA : Covariate Adjusted PCoA Plot (Version 1.3)
2020
abdiv : Alpha and Beta Diversity Measures (Version 0.2.0)
2020
adegenet : Exploratory Analysis of Genetic and Genomic Data (Version 2.1.10)
2007
adespatial : Multivariate Multiscale Spatial Analysis (Version 0.3-23)
2016
analogue : Analogue and Weighted Averaging Methods for Palaeoecology (Version 0.17-6)
2006
ausplotsR : TERN AusPlots Australian Ecosystem Monitoring Data (Version 2.0.5)
2020
betaper : Taxonomic Uncertainty on Multivariate Analyses of Ecological Data (Version 1.1-2)
2008
betapart : Partitioning Beta Diversity into Turnover and Nestedness Components (Version 1.6)
2012
bingat : Binary Graph Analysis Tools (Version 1.3)
2014
biosampleR : Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation (Version 1.0.4)
2023
bipartite : Visualising Bipartite Networks and Calculating Some (Ecological) Indices (Version 2.19)
2007
bipartiteD3 : Interactive Bipartite Graphs (Version 0.3.0)
2018
blender : Analyze biotic homogenization of landscapes (Version 0.1.2)
2010
canaper : Categorical Analysis of Neo- And Paleo-Endemism (Version 1.0.1)
2022
cati : Community Assembly by Traits: Individuals and Beyond (Version 0.99.4)
2014
chemodiv : Analysing Chemodiversity of Phytochemical Data (Version 0.3.0)
2022
cml : Conditional Manifold Learning (Version 0.2.2)
2021
cocorresp : Co-Correspondence Analysis Methods (Version 0.4-4)
2005
codyn : Community Dynamics Metrics (Version 2.0.5)
2015
comsimitv : Flexible Framework for Simulating Community Assembly (Version 0.1.5)
2020
dartR.spatial : Applying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data (Version 0.78)
2023
dartR : Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.7)
2017
diathor : Calculate Ecological Information and Diatom Based Indices (Version 0.1.0)
2020
dilp : Reconstruct Paleoclimate and Paleoecology with Leaf Physiognomy (Version 1.1.0)
2024
dimRed : A Framework for Dimensionality Reduction (Version 0.2.6)
2017
dispRity : Measuring Disparity (Version 1.8)
2018
dissCqN : Multiple Assemblage Dissimilarity for Orders q = 0-N (Version 0.1.0)
2021
divDyn : Diversity Dynamics using Fossil Sampling Data (Version 0.8.2)
2018
divvy : Spatial Subsampling of Biodiversity Occurrence Data (Version 1.0.0)
2023
dynRB : Dynamic Range Boxes (Version 0.18)
2015
eHOF : Extended HOF (Huisman-Olff-Fresco) Models (Version 1.15)
2013
easyCODA : Compositional Data Analysis in Practice (Version 0.34.3)
2018
ecan : Ecological Analysis and Visualization (Version 0.2.1)
2023
ecocbo : Calculating Optimum Sampling Effort in Community Ecology (Version 0.10.2)
2023
ecolottery : Coalescent-Based Simulation of Ecological Communities (Version 1.0.0)
2017
ecoregime : Analysis of Ecological Dynamic Regimes (Version 0.2.0)
2023
ecospace : Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks (Version 1.4.2)
2015
ecospat : Spatial Ecology Miscellaneous Methods (Version 4.0.0)
2014
ecostats : Code and Data Accompanying the Eco-Stats Text (Warton 2022) (Version 1.1.11)
2020
ecotraj : Ecological Trajectory Analysis (Version 0.1.1)
2021
edmcr : Euclidean Distance Matrix Completion Tools (Version 0.2.0)
2017
enmpa : Ecological Niche Modeling using Presence-Absence Data (Version 0.1.5)
2023
entropart : Entropy Partitioning to Measure Diversity (Version 1.6-13)
2013
enveomics.R : Various Utilities for Microbial Genomics and Metagenomics (Version 1.9.1)
2016
epiphy : Analysis of Plant Disease Epidemics (Version 0.5.0)
2018
evolqg : Evolutionary Quantitative Genetics (Version 0.3-4)
2015
forams : Foraminifera and Community Ecology Analyses (Version 2.0-6)
2011
fundiversity : Easy Computation of Functional Diversity Indices (Version 1.1.1)
2021
funspace : Creating and Representing Functional Trait Spaces (Version 0.2.1)
2023
gdm : Generalized Dissimilarity Modeling (Version 1.5.0-9.1)
2015
ggordiplots : Make 'ggplot2' Versions of Vegan's Ordiplots (Version 0.4.3)
2023
glmm.hp : Hierarchical Partitioning of Marginal R2 for Generalized Mixed-Effect Models (Version 0.1-2)
2022
glottospace : Language Mapping and Geospatial Analysis of Linguistic and Cultural Data (Version 0.0.112)
2022
goeveg : Functions for Community Data and Ordinations (Version 0.7.4)
2016
graph4lg : Build Graphs for Landscape Genetics Analysis (Version 1.8.0)
2019
grapherator : A Modular Multi-Step Graph Generator (Version 1.0.0)
2017
hagis : Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity (Version 3.1.11)
2019
hilldiv : Integral Analysis of Diversity Based on Hill Numbers (Version 1.5.1)
2019
iCAMP : Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis (Version 1.5.12)
2020
idar : Individual Diversity-Area Relationships (Version 1.5)
2017
isopam : Clustering of Sites with Species Data (Version 2.0)
2010
labdsv : Ordination and Multivariate Analysis for Ecology (Version 2.1-0)
2005
loe : Local Ordinal Embedding (Version 1.1)
2014
mFD : Compute and Illustrate the Multiple Facets of Functional Diversity (Version 1.0.7)
2021
mcMST : A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem (Version 1.1.1)
2017
mefa : Multivariate Data Handling in Ecology and Biogeography (Version 3.2-8)
2007
memgene : Spatial Pattern Detection in Genetic Distance Data Using Moran's Eigenvector Maps (Version 1.0.2)
2014
metacoder : Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data (Version 0.3.7)
2016
metacom : Analysis of the 'Elements of Metacommunity Structure' (Version 1.5.3)
2013
metrix : Water Quality Metrics Calculator (Version 1.1.0)
2022
microbial : Do 16s Data Analysis and Generate Figures (Version 0.0.20)
2020
microeco : Microbial Community Ecology Data Analysis (Version 1.6.0)
2020
mirt : Multidimensional Item Response Theory (Version 1.41)
2011
mixKernel : Omics Data Integration Using Kernel Methods (Version 0.9-1)
2017
mobsim : Spatial Simulation and Scale-Dependent Analysis of Biodiversity Changes (Version 0.3.1)
2017
mpmcorrelogram : Multivariate Partial Mantel Correlogram (Version 0.1-4)
2010
naturaList : Classify Occurrences by Confidence Levels in the Species ID (Version 0.5.2)
2021
neonPlantEcology : Process NEON Plant Data for Ecological Analysis (Version 1.5.0)
2024
netassoc : Inference of Species Associations from Co-Occurrence Data (Version 0.7.0)
2015
node2vec : Algorithmic Framework for Representational Learning on Graphs (Version 0.1.0)
2021
nodiv : Compares the Distribution of Sister Clades Through a Phylogeny (Version 1.4.2)
2014
ordiBreadth : Ordinated Diet Breadth (Version 1.0)
2015
ordr : A 'tidyverse' Extension for Ordinations and Biplots (Version 0.1.1)
2022
paco : Procrustes Application to Cophylogenetic Analysis (Version 0.4.2)
2015
palaeoSig : Significance Tests for Palaeoenvironmental Reconstructions (Version 2.1-3)
2011
patternize : Quantification of Color Pattern Variation (Version 0.0.5)
2017
pctax : Professional Comprehensive Omics Data Analysis (Version 0.1.1)
2024
pcutils : Some Useful Functions for Statistics and Visualization (Version 0.2.5)
2023
permute : Functions for Generating Restricted Permutations of Data (Version 0.9-7)
2011
pez : Phylogenetics for the Environmental Sciences (Version 1.2-4)
2014
phyloregion : Biogeographic Regionalization and Macroecology (Version 1.0.8)
2020
phylotools : Phylogenetic Tools for Eco-Phylogenetics (Version 0.2.2)
2010
picante : Integrating Phylogenies and Ecology (Version 1.8.2)
2008
poppr : Genetic Analysis of Populations with Mixed Reproduction (Version 2.9.6)
2013
primer : Functions and Data for the Book, a Primer of Ecology with R (Version 1.2.0)
2009
rareNMtests : Ecological and Biogeographical Null Model Tests for Comparing Rarefaction Curves (Version 1.2)
2014
raptr : Representative and Adequate Prioritization Toolkit in R (Version 1.0.1)
2016
rdacca.hp : Hierarchical and Variation Partitioning for Canonical Analysis (Version 1.1-0)
2020
recluster : Ordination Methods for the Analysis of Beta-Diversity Indices (Version 2.9)
2013
restoptr : Ecological Restoration Planning (Version 1.0.6)
2022
rioja : Analysis of Quaternary Science Data (Version 1.0-6)
2009
sads : Maximum Likelihood Models for Species Abundance Distributions (Version 0.6.3)
2014
segRDA : Modeling Non-Continuous Linear Responses of Ecological Data (Version 1.0.2)
2019
seriation : Infrastructure for Ordering Objects Using Seriation (Version 1.5.5)
2007
shapeR : Collection and Analysis of Otolith Shape Data (Version 1.0-1)
2015
sharpshootR : A Soil Survey Toolkit (Version 2.3)
2014
shipunov : Miscellaneous Functions from Alexey Shipunov (Version 1.17.1)
2019
smacofx : Flexible Multidimensional Scaling and 'smacof' Extensions (Version 0.6-6)
2023
smartsnp : Fast Multivariate Analyses of Big Genomic Data (Version 1.1.0)
2021
soundecology : Soundscape Ecology (Version 1.3.3)
2013
spaa : SPecies Association Analysis (Version 0.2.2)
2010
spaceNet : Latent Space Models for Multidimensional Networks (Version 1.2)
2018
spmoran : Fast Spatial Regression using Moran Eigenvectors (Version 0.2.3)
2017
stops : Structure Optimized Proximity Scaling (Version 1.0-1)
2023
supportR : Support Functions for Wrangling and Visualization (Version 1.3.0)
2023
surveyvoi : Survey Value of Information (Version 1.0.6)
2021
tapnet : Trait Matching and Abundance for Predicting Bipartite Networks (Version 0.3)
2021
taxize : Taxonomic Information from Around the Web (Version 0.9.100)
2012
tidypaleo : Tidy Tools for Paleoenvironmental Archives (Version 0.1.3)
2021
tspmeta : Instance Feature Calculation and Evolutionary Instance Generation for the Traveling Salesman Problem (Version 1.2)
2013
ulrb : Unsupervised Learning Based Definition of Microbial Rare Biosphere (Version 0.1.3)
2023
vcfR : Manipulate and Visualize VCF Data (Version 1.15.0)
2016
vegan3d : Static and Dynamic 3D and Editable Interactive Plots for the 'vegan' Package (Version 1.3-0)
2014
vegclust : Fuzzy Clustering of Vegetation Data (Version 2.0.2)
2012
vegdata : Access Vegetation Databases and Treat Taxonomy (Version 0.9.12)
2009
vegtable : Handling Vegetation Data Sets (Version 0.1.8)
2017
visvow : Visible Vowels: Visualization of Vowel Variation (Version 1.3.11)
2018
yaImpute : Nearest Neighbor Observation Imputation and Evaluation Tools (Version 1.0-34)
2007
zetadiv : Functions to Compute Compositional Turnover Using Zeta Diversity (Version 1.2.1)
2015
Showing 1-212 of 212
RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
