Referenced by ⇅
Year
ACDC : Analysis of Congruent Diversification Classes (Version 1.0.0)
2022
BacArena : Modeling Framework for Cellular Communities in their
Environments (Version 1.8.2)
2016
briskaR : Biological Risk Assessment (Version 1.0.4)
2016
bvpSolve : Solvers for Boundary Value Problems of Differential Equations (Version 1.4.4)
2009
CausalKinetiX : Learning Stable Structures in Kinetic Systems (Version 0.2.1)
2019
deTestSet : Test Set for Differential Equations (Version 1.1.7.4)
2011
epcc : Simulating Populations of Ectotherms under Global Warming (Version 1.4.7)
2021
GPoM.FDLyapu : Lyapunov Exponents and Kaplan-Yorke Dimension (Version 1.0)
2019
microsamplingDesign : Finding Optimal Microsampling Designs for Non-Compartmental
Pharmacokinetic Analysis (Version 1.0.8)
2018
exDE : Extensible Differential Equations for Mosquito-Borne Pathogen
Modeling (Version 1.0.0)
2022
ARGOS : Automatic Regression for Governing Equations (ARGOS) (Version 0.1.1)
2023
ATNr : Run Allometric Trophic Networks Models (Version 1.1.0)
2022
AquaEnv : Integrated Development Toolbox for Aquatic Chemical Model Generation (Version 1.0-4)
2009
AssetPricing : Optimal Pricing of Assets with Fixed Expiry Date (Version 1.0-3)
2012
BioCro : Modular Crop Growth Simulations (Version 3.1.3)
2024
CRABS : Congruent Rate Analyses in Birth-Death Scenarios (Version 1.2.0)
2022
CollocInfer : Collocation Inference for Dynamic Systems (Version 1.0.4)
2010
DAISIE : Dynamical Assembly of Islands by Speciation, Immigration and Extinction (Version 4.4.1)
2015
DAMOCLES : Dynamic Assembly Model of Colonization, Local Extinction and Speciation (Version 2.3)
2014
DDD : Diversity-Dependent Diversification (Version 5.2.2)
2012
DIMORA : Diffusion Models R Analysis (Version 0.3.6)
2018
DSAIDE : Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution) (Version 0.9.6)
2017
DSAIRM : Dynamical Systems Approach to Immune Response Modeling (Version 0.9.6)
2018
DivE : Diversity Estimator (Version 1.3)
2014
EpiDynamics : Dynamic Models in Epidemiology (Version 0.3.1)
2014
EpiModel : Mathematical Modeling of Infectious Disease Dynamics (Version 2.4.0)
2013
EvolutionaryGames : Important Concepts of Evolutionary Game Theory (Version 0.1.2)
2017
FME : A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis (Version 1.3.6.3)
2009
GPoM : Generalized Polynomial Modelling (Version 1.4)
2017
LoopDetectR : Comprehensive Feedback Loop Detection in ODE Models (Version 0.1.2)
2020
MGDrivE2 : Mosquito Gene Drive Explorer 2 (Version 2.1.0)
2020
ODEnetwork : Network of Differential Equations (Version 1.3.2)
2018
ODEsensitivity : Sensitivity Analysis of Ordinary Differential Equations (Version 1.1.2)
2018
PBD : Protracted Birth-Death Model of Diversification (Version 1.4)
2014
PBSmodelling : GUI Tools Made Easy: Interact with Models and Explore Data (Version 2.69.3)
2006
PFIM : Population Fisher Information Matrix (Version 6.0.3)
2022
PopED : Population (and Individual) Optimal Experimental Design (Version 0.6.0)
2014
RLumModel : Solving Ordinary Differential Equations to Understand Luminescence (Version 0.2.10)
2016
RPANDA : Phylogenetic ANalyses of DiversificAtion (Version 2.3)
2014
ReacTran : Reactive Transport Modelling in 1d, 2d and 3d (Version 1.4.3.1)
2009
Sim.DiffProc : Simulation of Diffusion Processes (Version 4.9)
2011
SoilR : Models of Soil Organic Matter Decomposition (Version 1.2.107)
2012
StrathE2E2 : End-to-End Marine Food Web Model (Version 3.3.0)
2020
TDCor : Gene Network Inference from Time-Series Transcriptomic Data (Version 0.1-2)
2015
TESS : Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events (Version 2.1.2)
2012
TIMP : Fitting Separable Nonlinear Models in Spectroscopy and Microscopy (Version 1.13.6)
2007
TrenchR : Tools for Microclimate and Biophysical Ecology (Version 1.1.1)
2022
ZeBook : Working with Dynamic Models for Agriculture and Environment (Version 1.1)
2013
asbio : A Collection of Statistical Tools for Biologists (Version 1.9-7)
2010
asteRisk : Computation of Satellite Position (Version 1.4.3)
2021
biogrowth : Modelling of Population Growth (Version 1.0.3)
2020
bioinactivation : Mathematical Modelling of (Dynamic) Microbial Inactivation (Version 1.2.3)
2015
cOde : Automated C Code Generation for 'deSolve', 'bvpSolve' (Version 1.1.1)
2015
calibrar : Automated Parameter Estimation for Complex Models (Version 0.9.0)
2016
capm : Companion Animal Population Management (Version 0.14.0)
2014
care4cmodel : Carbon-Related Assessment of Silvicultural Concepts (Version 1.0.1)
2023
chouca : A Stochastic Cellular Automaton Engine (Version 0.1.99)
2024
covid19.analytics : Load and Analyze Live Data from the COVID-19 Pandemic (Version 2.1.3.3)
2020
cvasi : Calibration, Validation, and Simulation of TKTD Models (Version 0.10.5)
2024
dMod : Dynamic Modeling and Parameter Estimation in ODE Models (Version 1.0.2)
2015
dde : Solve Delay Differential Equations (Version 1.0.5)
2019
deBInfer : Bayesian Inference for Differential Equations (Version 0.4.4)
2016
deFit : Fitting Differential Equations to Time Series Data (Version 0.2.1)
2023
deBif : Bifurcation Analysis of Ordinary Differential Equation Systems (Version 0.1.8)
2022
diversitree : Comparative 'Phylogenetic' Analyses of Diversification (Version 0.10-0)
2010
doremi : Dynamics of Return to Equilibrium During Multiple Inputs (Version 1.0.0)
2018
dynr : Dynamic Models with Regime-Switching (Version 0.1.16-105)
2016
ecolMod : "A Practical Guide to Ecological Modelling - Using R as a Simulation Platform" (Version 1.2.6.4)
2008
ecosim : Toolbox for Aquatic Ecosystem Modeling (Version 1.3-4)
2013
ecostatscale : Statistical Scaling Functions for Ecological Systems (Version 1.1)
2021
embryogrowth : Tools to Analyze the Thermal Reaction Norm of Embryo Growth (Version 9.1)
2014
epifitter : Analysis and Simulation of Plant Disease Progress Curves (Version 0.3.0)
2020
epimdr : Functions and Data for "Epidemics: Models and Data in R" (Version 0.6-5)
2018
epimdr2 : Functions and Data for "Epidemics: Models and Data in R (2nd Edition)" (Version 1.0-9)
2022
evoper : Evolutionary Parameter Estimation for 'Repast Simphony' Models (Version 0.5.0)
2016
fastbeta : Fast Estimation of Time-Varying Infectious Disease Transmission Rates (Version 0.2.0)
2023
fda : Functional Data Analysis (Version 6.1.8)
2003
fitode : Tools for Ordinary Differential Equations Model Fitting (Version 0.1.1)
2022
flexsurv : Flexible Parametric Survival and Multi-State Models (Version 2.2.2)
2011
gauseR : Lotka-Volterra Models for Gause's 'Struggle for Existence' (Version 1.2)
2020
geiger : Analysis of Evolutionary Diversification (Version 2.0.11)
2007
grandR : Comprehensive Analysis of Nucleotide Conversion Sequencing Data (Version 0.2.5)
2022
greta.dynamics : Modelling Structured Dynamical Systems in 'greta' (Version 0.2.0)
2022
growthrates : Estimate Growth Rates from Experimental Data (Version 0.8.4)
2016
hgm : Holonomic Gradient Method and Gradient Descent (Version 1.23)
2015
hisse : Hidden State Speciation and Extinction (Version 2.1.11)
2015
hmer : History Matching and Emulation Package (Version 1.5.6)
2022
httk : High-Throughput Toxicokinetics (Version 2.3.1)
2015
hypergeo : The Gauss Hypergeometric Function (Version 1.2-13)
2008
idmodelr : Infectious Disease Model Library and Utilities (Version 0.4.0)
2019
idopNetwork : A Network Tool to Dissect Spatial Community Ecology (Version 0.1.2)
2022
isobxr : Stable Isotope Box Modelling in R (Version 2.0.0)
2021
landsepi : Landscape Epidemiology and Evolution (Version 1.4.0)
2018
lemna : Lemna Ecotox Effect Model (Version 1.0.1)
2021
magi : MAnifold-Constrained Gaussian Process Inference (Version 1.2.2)
2021
microPop : Process-Based Modelling of Microbial Populations (Version 1.6)
2017
mistral : Methods in Structural Reliability (Version 2.2.2)
2013
mizer : Dynamic Multi-Species Size Spectrum Modelling (Version 2.5.1)
2013
mkin : Kinetic Evaluation of Chemical Degradation Data (Version 1.2.6)
2010
morse : Modelling Reproduction and Survival Data in Ecotoxicology (Version 3.3.2)
2014
mvDFA : Multivariate Detrended Fluctuation Analysis (Version 0.0.4)
2023
neuRosim : Simulate fMRI Data (Version 0.2-14)
2010
nhm : Non-Homogeneous Markov and Hidden Markov Multistate Models (Version 0.1.1)
2019
odeGUTS : Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using Compiled Code (Version 1.0.2)
2021
odin : ODE Generation and Integration (Version 1.2.5)
2019
pCODE : Estimation of an Ordinary Differential Equation Model by Parameter Cascade Method (Version 0.9.4)
2019
paropt : Parameter Optimizing of ODE-Systems (Version 0.3.3)
2020
phaseR : Phase Plane Analysis of One- And Two-Dimensional Autonomous ODE Systems (Version 2.2.1)
2013
pksensi : Global Sensitivity Analysis in Physiologically Based Kinetic Modeling (Version 1.2.3)
2018
pomp : Statistical Inference for Partially Observed Markov Processes (Version 5.7)
2007
primer : Functions and Data for the Book, a Primer of Ecology with R (Version 1.2.0)
2009
r2sundials : Wrapper for 'SUNDIALS' Solving ODE and Sensitivity Problem (Version 6.5.0-4)
2020
readsdr : Translate Models from System Dynamics Software into 'R' (Version 0.3.0)
2020
rodeo : A Code Generator for ODE-Based Models (Version 0.7.8)
2016
rstpm2 : Smooth Survival Models, Including Generalized Survival Models (Version 1.6.3)
2015
rties : Modeling Interpersonal Dynamics (Version 5.0.0)
2020
scaRabee : Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models (Version 1.1-4)
2010
seeds : Estimate Hidden Inputs using the Dynamic Elastic Net (Version 0.9.1)
2020
sensobol : Computation of Variance-Based Sensitivity Indices (Version 1.1.5)
2019
shinySIR : Interactive Plotting for Mathematical Models of Infectious Disease Spread (Version 0.1.2)
2020
shinytest2 : Testing for Shiny Applications (Version 0.3.1)
2022
simecol : Simulation of Ecological (and Other) Dynamic Systems (Version 0.8-14)
2006
simode : Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching (Version 1.2.2)
2018
smfsb : Stochastic Modelling for Systems Biology (Version 1.5)
2011
snvecR : Calculate Earth’s Obliquity and Precession in the Past (Version 3.9.3)
2023
soilassessment : Assessment Models for Agriculture Soil Conditions and Crop Suitability (Version 0.2.6)
2019
soilfoodwebs : Soil Food Web Analysis (Version 1.0.2)
2023
spdynmod : Spatio-Dynamic Wetland Plant Communities Model (Version 1.1.6)
2014
stagePop : Modelling the Population Dynamics of a Stage-Structured Species in Continuous Time (Version 1.1-2)
2015
streambugs : Parametric Ordinary Differential Equations Model of Growth, Death, and Respiration of Macroinvertebrate and Algae Taxa (Version 1.4)
2017
takos : Analysis of Differential Calorimetry Scans (Version 0.2.0)
2018
tdsa : Time-Dependent Sensitivity Analysis (Version 1.1-0)
2023
tfNeuralODE : Create Neural Ordinary Differential Equations with 'tensorflow' (Version 0.1.0)
2023
tseriesChaos : Analysis of Nonlinear Time Series (Version 0.1-13.1)
2005
ubiquity : PKPD, PBPK, and Systems Pharmacology Modeling Tools (Version 2.0.3)
2019
waydown : Computation of Approximate Potentials for Weakly Non-Gradient Fields (Version 1.1.0)
2021
Showing 1-136 of 136
RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
