R Package Scholar
16,986
Referenced by ⇅ Year
bayesbr: Beta Regression on a Bayesian Model (Version 0.0.1.0)

2020
chickn: "Compressive" Hierarchical Kernel Clustering Toolbox (Version 1.2.3)

2020
diseq: Estimation Methods for Markets in Equilibrium and Disequilibrium (Version 0.4.6)

2020
hdtg: Generate Samples from Multivariate Truncated Normal Distributions (Version 0.2.0)

2022
MapeBay: Multivariate Analysis of Variance Panel, PERMANOVA and Bayesian (Version 0.1.0)

2021
rollRegres: Fast Rolling and Expanding Window Linear Regression (Version 0.1.4)

2018
ProbReco: Score Optimal Probabilistic Forecast Reconciliation (Version 0.1.2)

2020
expertsurv: Incorporate Expert Opinion with Parametric Survival Models (Version 1.3.0)

2023
AovBay: Classic, Nonparametric and Bayesian One-Way Analysis of Variance Panel (Version 0.1.0)

2021
BGVAR: Bayesian Global Vector Autoregressions (Version 2.5.5)

2020
BINtools: Bayesian BIN (Bias, Information, Noise) Model of Forecasting (Version 0.2.0)

2021
BPrinStratTTE: Causal Effects in Principal Strata Defined by Antidrug Antibodies (Version 0.0.7)

2023
BayesGmed: Bayesian Causal Mediation Analysis using 'Stan' (Version 0.0.3)

2023
BayesGrowth: Estimate Fish Growth Using MCMC Analysis (Version 1.0.0)

2023
BayesSenMC: Different Models of Posterior Distributions of Adjusted Odds Ratio (Version 0.1.5)

2019
BayesianPlatformDesignTimeTrend: Simulate and Analyse Bayesian Platform Trial with Time Trend (Version 1.2.3)

2023
BeeGUTS: General Unified Threshold Model of Survival for Bees using Bayesian Inference (Version 1.1.3)

2022
Bernadette: Bayesian Inference and Model Selection for Stochastic Epidemics (Version 1.1.5)

2023
CaseBasedReasoning: Case Based Reasoning (Version 0.3)

2018
DNAtools: Tools for Analysing Forensic Genetic DNA Data (Version 0.2-4)

2011
DatabionicSwarm: Swarm Intelligence for Self-Organized Clustering (Version 1.2.1)

2017
EcoEnsemble: A General Framework for Combining Ecosystem Models (Version 1.0.5)

2022
EloSteepness: Bayesian Dominance Hierarchy Steepness via Elo Rating and David's Scores (Version 0.5.0)

2022
Euclimatch: Euclidean Climatch Algorithm (Version 1.0.1)

2023
FLSSS: Mining Rigs for Problems in the Subset Sum Family (Version 9.1.3)

2014
FlexReg: Regression Models for Bounded Continuous and Discrete Responses (Version 1.3.0)

2020
FuncDiv: Compute Contributional Diversity Metrics (Version 1.0.0)

2023
GMKMcharlie: Unsupervised Gaussian Mixture and Minkowski and Spherical K-Means with Constraints (Version 1.1.5)

2019
GeneralizedUmatrix: Credible Visualization for Two-Dimensional Projections of Data (Version 1.2.6)

2017
GenomeAdmixR: Simulate Admixture of Genomes (Version 2.1.7)

2021
IncDTW: Incremental Calculation of Dynamic Time Warping (Version 1.1.4.4)

2017
LMMELSM: Fit Latent Multivariate Mixed Effects Location Scale Models (Version 0.2.0)

2021
MultiBD: Multivariate Birth-Death Processes (Version 0.2.0)

2016
NNS: Nonlinear Nonparametric Statistics (Version 10.7)

2016
NestedCategBayesImpute: Modeling, Imputing and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations (Version 1.2.1)

2016
OncoBayes2: Bayesian Logistic Regression for Oncology Dose-Escalation Trials (Version 0.8-9)

2019
OpenMx: Extended Structural Equation Modelling (Version 2.21.11)

2015
PINSPlus: Clustering Algorithm for Data Integration and Disease Subtyping (Version 2.0.7)

2018
PosteriorBootstrap: Non-Parametric Sampling with Parallel Monte Carlo (Version 0.1.2)

2019
RBesT: R Bayesian Evidence Synthesis Tools (Version 1.7-3)

2017
Ravages: Rare Variant Analysis and Genetic Simulations (Version 1.1.3)

2020
RcppMeCab: 'rcpp' Wrapper for 'mecab' Library (Version 0.0.1.2)

2018
Rfast: A Collection of Efficient and Extremely Fast R Functions (Version 2.1.0)

2016
Rfast2: A Collection of Efficient and Extremely Fast R Functions II (Version 0.1.5.2)

2019
RoBTT: Robust Bayesian T-Test (Version 1.3.0)

2022
SAR: Smart Adaptive Recommendations (Version 1.0.3)

2019
Scalelink: Create Scale Linkage Scores (Version 1.0)

2019
SpatMCA: Regularized Spatial Maximum Covariance Analysis (Version 1.0.4)

2016
SpatPCA: Regularized Principal Component Analysis for Spatial Data (Version 1.3.5)

2015
StMoSim: Quantile-Quantile Plot with Several Gaussian Simulations (Version 3.1.1)

2010
StanHeaders: C++ Header Files for Stan (Version 2.32.7)

2015
StanMoMo: Bayesian Mortality Modelling with 'Stan' (Version 1.2.0)

2021
TFRE: A Tuning-Free Robust and Efficient Approach to High-Dimensional Regression (Version 0.1.0)

2024
alien: Estimate Invasive and Alien Species (IAS) Introduction Rates (Version 1.0.1)

2024
asteRisk: Computation of Satellite Position (Version 1.4.3)

2021
autocart: Autocorrelation Regression Trees (Version 1.4.5)

2021
bakR: Analyze and Compare Nucleotide Recoding RNA Sequencing Datasets (Version 1.0.1)

2022
baldur: Bayesian Hierarchical Modeling for Label-Free Proteomics (Version 0.0.3)

2023
baseballr: Acquiring and Analyzing Baseball Data (Version 1.6.0)

2022
bayes4psy: User Friendly Bayesian Data Analysis for Psychology (Version 1.2.12)

2019
bayesGAM: Fit Multivariate Response Generalized Additive Models using Hamiltonian Monte Carlo (Version 0.0.2)

2020
bayesforecast: Bayesian Time Series Modeling with Stan (Version 1.0.1)

2021
bayeslm: Efficient Sampling for Gaussian Linear Regression with Arbitrary Priors (Version 1.0.1)

2017
bcf: Causal Inference using Bayesian Causal Forests (Version 2.0.2)

2018
beanz: Bayesian Analysis of Heterogeneous Treatment Effect (Version 3.1)

2016
bennu: Bayesian Estimation of Naloxone Kit Number Under-Reporting (Version 0.3.0)

2023
blavaan: Bayesian Latent Variable Analysis (Version 0.5-4)

2015
bmggum: Bayesian Multidimensional Generalized Graded Unfolding Model (Version 0.1.0)

2021
bmlm: Bayesian Multilevel Mediation (Version 1.3.15)

2016
bootUR: Bootstrap Unit Root Tests (Version 1.0.3)

2020
brms.mmrm: Bayesian MMRMs using 'brms' (Version 0.1.0)

2023
btb: Beyond the Border - Kernel Density Estimation for Urban Geography (Version 0.2.0)

2016
bws: Bayesian Weighted Sums (Version 0.1.0)

2022
catSurv: Computerized Adaptive Testing for Survey Research (Version 1.5.0)

2017
cppRouting: Algorithms for Routing and Solving the Traffic Assignment Problem (Version 3.1)

2019
ctsem: Continuous Time Structural Equation Modelling (Version 3.9.1)

2015
dbmss: Distance-Based Measures of Spatial Structures (Version 2.9-0)

2012
detrendr: Detrend Images (Version 0.6.15)

2017
distops: Usual Operations for Distance Matrices in R (Version 0.1.0)

2024
dodgr: Distances on Directed Graphs (Version 0.2.21)

2017
dtwclust: Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance (Version 5.5.12)

2015
ebTobit: Empirical Bayesian Tobit Matrix Estimation (Version 1.0.1)

2023
fasano.franceschini.test: Fasano-Franceschini Test: A Multivariate Kolmogorov-Smirnov Two-Sample Test (Version 2.2.2)

2021
fastRhockey: Functions to Access Premier Hockey Federation and National Hockey League Play by Play Data (Version 0.4.0)

2021
fastTopics: Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data (Version 0.6-163)

2022
fastglmpca: Fast Algorithms for Generalized Principal Component Analysis (Version 0.1-103)

2024
fcirt: Forced Choice in Item Response Theory (Version 0.1.0)

2022
gaston: Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models (Version 1.6)

2015
geostan: Bayesian Spatial Analysis (Version 0.6.0)

2022
gibasa: An Alternative 'Rcpp' Wrapper of 'MeCab' (Version 1.1.0)

2023
glmmPen: High Dimensional Penalized Generalized Linear Mixed Models (pGLMM) (Version 1.5.4.4)

2022
glmmfields: Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling (Version 0.1.8)

2018
glow: Make Plots that Glow (Version 0.11.0)

2020
greencrab.toolkit: Run 'Stan' Models to Interpret Green Crab Monitoring Assessments (Version 0.2)

2023
hbamr: Hierarchical Bayesian Aldrich-McKelvey Scaling via 'Stan' (Version 2.3.0)

2023
hermiter: Efficient Sequential and Batch Estimation of Univariate and Bivariate Probability Density Functions and Cumulative Distribution Functions along with Quantiles (Univariate) and Nonparametric Correlation (Bivariate) (Version 2.3.1)

2020
historicalborrowlong: Longitudinal Bayesian Historical Borrowing Models (Version 0.0.8)

2022
hoopR: Access Men's Basketball Play by Play Data (Version 2.1.0)

2021
hpa: Distributions Hermite Polynomial Approximation (Version 1.3.3)

2019
hwep: Hardy-Weinberg Equilibrium in Polyploids (Version 2.0.2)

2021
idem: Inference in Randomized Controlled Trials with Death and Missingness (Version 5.2)

2016
jfa: Statistical Methods for Auditing (Version 0.7.1)

2020
junctions: The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages (Version 2.1.0)

2018
lamW: Lambert-W Function (Version 2.2.3)

2015
lessSEM: Non-Smooth Regularization for Structural Equation Models (Version 1.5.5)

2023
lgpr: Longitudinal Gaussian Process Regression (Version 1.2.4)

2021
lingmatch: Linguistic Matching and Accommodation (Version 1.0.6)

2021
mappoly: Genetic Linkage Maps in Autopolyploids (Version 0.4.1)

2020
markets: Estimation Methods for Markets in Equilibrium and Disequilibrium (Version 1.1.5)

2022
markovchain: Easy Handling Discrete Time Markov Chains (Version 0.9.5)

2013
matrixprofiler: Matrix Profile for R (Version 0.1.9)

2021
measr: Bayesian Psychometric Measurement Using 'Stan' (Version 1.0.0)

2023
metaBMA: Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis (Version 0.6.9)

2017
microclass: Methods for Taxonomic Classification of Prokaryotes (Version 1.2)

2016
milr: Multiple-Instance Logistic Regression with LASSO Penalty (Version 0.3.1)

2016
msce: Hazard of Multi-Stage Clonal Expansion Models (Version 1.0.1)

2020
multinma: Bayesian Network Meta-Analysis of Individual and Aggregate Data (Version 0.6.1)

2020
multipleDL: Addressing Detection Limits by Cumulative Probability Models (CPMs) (Version 1.0.0)

2023
nbfar: Negative Binomial Factor Regression Models ('nbfar') (Version 0.1)

2022
networkscaleup: Network Scale-Up Models for Aggregated Relational Data (Version 0.1-2)

2022
oddsapiR: Access Live Sports Odds from the Odds API (Version 0.0.3)

2022
openCR: Open Population Capture-Recapture (Version 2.2.6)

2018
parallelDist: Parallel Distance Matrix Computation using Multiple Threads (Version 0.2.6)

2017
patternplot: Versatile Pie Charts, Ring Charts, Bar Charts and Box Plots using Patterns, Colors and Images (Version 1.0.0)

2016
pema: Penalized Meta-Analysis (Version 0.1.3)

2021
phacking: Sensitivity Analysis for p-Hacking in Meta-Analyses (Version 0.2.1)

2022
prome: Patient-Reported Outcome Data Analysis with Stan (Version 1.9.1.0)

2022
prophet: Automatic Forecasting Procedure (Version 1.0)

2017
psBayesborrow: Bayesian Information Borrowing with Propensity Score Matching (Version 1.1.0)

2024
rNeighborGWAS: Testing Neighbor Effects in Marker-Based Regressions (Version 1.2.4)

2020
rPref: Database Preferences and Skyline Computation (Version 1.4.0)

2014
rTRNG: Advanced and Parallel Random Number Generation via 'TRNG' (Version 4.23.1-2)

2019
rater: Statistical Models of Repeated Categorical Rating Data (Version 1.3.1)

2020
rbiom: Read/Write, Transform, and Summarize 'BIOM' Data (Version 1.0.3)

2020
rbmi: Reference Based Multiple Imputation (Version 1.2.6)

2022
rcbayes: Estimate Rogers-Castro Migration Age Schedules with Bayesian Models (Version 0.2.0)

2021
reservr: Fit Distributions and Neural Networks to Censored and Truncated Data (Version 0.0.2)

2022
rmBayes: Performing Bayesian Inference for Repeated-Measures Designs (Version 0.1.16)

2021
roll: Rolling and Expanding Statistics (Version 1.1.7)

2016
rstan: R Interface to Stan (Version 2.32.6)

2015
rstanbdp: Bayesian Deming Regression for Method Comparison (Version 0.0.2)

2024
rstanarm: Bayesian Applied Regression Modeling via Stan (Version 2.32.1)

2016
rstantools: Tools for Developing R Packages Interfacing with 'Stan' (Version 2.4.0)

2016
rts2: Real-Time Disease Surveillance (Version 0.7.4)

2022
rubias: Bayesian Inference from the Conditional Genetic Stock Identification Model (Version 0.3.4)

2018
rxode2ll: Log-Likelihood Functions for 'rxode2' (Version 2.0.11)

2022
scDHA: Single-Cell Decomposition using Hierarchical Autoencoder (Version 1.2.2)

2021
scistreer: Maximum-Likelihood Perfect Phylogeny Inference at Scale (Version 1.2.0)

2022
secr: Spatially Explicit Capture-Recapture (Version 4.6.6)

2010
secsse: Several Examined and Concealed States-Dependent Speciation and Extinction (Version 3.0.2)

2019
sentometrics: An Integrated Framework for Textual Sentiment Time Series Aggregation and Prediction (Version 1.0.0)

2017
seqtrie: Radix Tree and Trie-Based String Distances (Version 0.2.6)

2023
skm: Selective k-Means (Version 0.1.5.4)

2017
smam: Statistical Modeling of Animal Movements (Version 0.7.2)

2013
ssMousetrack: Bayesian State-Space Modeling of Mouse-Tracking Experiments via Stan (Version 1.1.6)

2018
stan4bart: Bayesian Additive Regression Trees with Stan-Sampled Parametric Extensions (Version 0.0-7)

2021
stringfish: Alt String Implementation (Version 0.16.0)

2020
surveil: Time Series Models for Disease Surveillance (Version 0.2.2)

2021
survstan: Fitting Survival Regression Models via 'Stan' (Version 0.0.7.1)

2023
tglkmeans: Efficient Implementation of K-Means++ Algorithm (Version 0.5.4)

2022
thurstonianIRT: Thurstonian IRT Models (Version 0.12.5)

2019
tipsae: Tools for Handling Indices and Proportions in Small Area Estimation (Version 1.0.1)

2022
truncnormbayes: Estimates Moments for a Truncated Normal Distribution using 'Stan' (Version 0.0.3)

2022
tsmp: Time Series with Matrix Profile (Version 0.4.15)

2018
tsnet: Fitting, Comparing, and Visualizing Networks Based on Time Series Data (Version 0.1.0)

2024
visit: Vaccine Phase I Design with Simultaneous Evaluation of Immunogenicity and Toxicity (Version 2.2)

2019
walker: Bayesian Generalized Linear Models with Time-Varying Coefficients (Version 1.0.8)

2017
wehoop: Access Women's Basketball Play by Play Data (Version 2.0.0)

2021
zoid: Bayesian Zero-and-One Inflated Dirichlet Regression Modelling (Version 1.3.1)

2021

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