Referenced by ⇅
Year
Biopeak : Identification of Impulse-Like Gene Expression Changes in Short
Genomic Series Data (Version 1.0)
2019
bnClustOmics : Bayesian Network-Based Clustering of Multi-Omics Data (Version 1.1.1)
2022
BSBT : The Bayesian Spatial Bradley--Terry Model (Version 1.2.1)
2020
clustcurv : Determining Groups in Multiples Curves (Version 2.0.1)
2019
clustDRM : Clustering Dose-Response Curves and Fitting Appropriate Models
to Them (Version 0.1-0)
2019
dragon : Deep Time Redox Analysis of the Geobiology Ontology Network (Version 1.2.1)
2019
dtwSat : Time-Weighted Dynamic Time Warping for Satellite Image Time
Series Analysis (Version 1.0.0)
2015
dycdtools : Tools for DYRESM-CAEDYM Model Development: Calibration Assistant
and Post-Processing (Version 0.4.3)
2020
dynplot : Visualising Single-Cell Trajectories (Version 1.1.2)
2021
dynsbm : Dynamic Stochastic Block Models (Version 0.7)
2017
elaborator : A "shiny" Application for Exploring Laboratory Data (Version 1.1)
2020
EventStudy : Event Study Analysis (Version 0.39.2)
2017
GeoFIS : Spatial Data Processing for Decision Making (Version 1.0.4)
2021
ggcoverage : Visualize Genome Coverage with Various Annotations (Version 0.7.1)
2022
IntLIM : Integration of Omics Data Using Linear Modeling (Version 2.0.2)
2022
jgcricolors : Manage "JGCRI" Color Palettes (Version 1.0.0)
2021
LDheatmap : Graphical Display of Pairwise Linkage Disequilibria Between SNPs (Version 1.0-6)
2005
liayson : Linking Singe-Cell Transcriptomes Atween Contemporary
Subpopulation Genomes (Version 1.0.5)
2018
linea : Linear Regression Interface (Version 0.1.1)
2022
longCatEDA : Package for Plotting Categorical Longitudinal and Time-Series
Data (Version 0.31)
2013
mapr : Visualize Species Occurrence Data (Version 0.5.2)
2016
maptools : Tools for Handling Spatial Objects (Version 1.1-8)
2003
modchart : A "shiny" Module for Creating Charts of Various Types (Version 0.5)
2020
modelplotr : Plots to Evaluate the Business Performance of Predictive Models (Version 1.1.0)
2019
nCov2019 : Exploring "COVID"-19 Statistics (Version 0.4.6)
2021
paleofire : Analysis of Charcoal Records from the Global Charcoal Database (Version 1.2.4)
2014
plotKML : Visualization of Spatial and Spatio-Temporal Objects in Google
Earth (Version 0.8-3)
2012
ProFound : Photometry Tools (Version 1.14.1)
2017
PWFSLSmoke : Utilities for Working with Air Quality Monitoring Data (Version 1.2.117)
2017
riverplot : Sankey or Ribbon Plots (Version 0.10)
2014
Rlda : Bayesian LDA for Mixed-Membership Clustering Analysis (Version 0.2.6)
2017
satscanMapper : "SaTScan" (TM) Results Mapper (Version 1.0.2)
2017
scImmuneGraph : Visualize the Basic Characteristics of Single-Cell Immune
Repertoire (Version 1.1.3)
2021
SeerMapper : A Quick Way to Map U.S. Rates and Data of U.S. States, Counties,
Census Tracts, or Seer Registries using 2000 and 2010 U.S.
Census Boundaries (Version 1.2.5)
2017
shinyr : Data Insights Through Inbuilt R Shiny App (Version 0.3.0)
2020
SiteAdapt : Site Adaptation of Solar Irradiance Modeled Series (Version 1.1.0)
2020
spectrolab : Class and Methods for Spectral Data (Version 0.0.18)
2017
SPOT : Sequential Parameter Optimization Toolbox (Version 2.11.14)
2010
SPOTMisc : Misc Extensions for the "SPOT" Package (Version 1.19.52)
2021
SPQR : Semi-Parametric Quantile Regression (Version 0.1.0)
2022
tidygate : Add Gate Information to Your Tibble (Version 0.4.9)
2020
TippingPoint : Enhanced Tipping Point Displays the Results of Sensitivity
Analysis for Missing Data (Version 1.2.0)
2016
treetop : A Shiny-Based Application for Extracting Forest Information from
LiDAR Data (Version 0.0.5)
2021
uwo4419 : UWO POLSCI 4419/9715 (Version 0.3.0)
2020
zonator : Utilities for Zonation Spatial Conservation Prioritization
Software (Version 0.6.0)
2017
tRophicPosition : Bayesian Trophic Position Estimation with Stable Isotopes (Version 0.8.0)
2017
cryptoTax : Report Crypto Taxes (Canada Only) (Version 0.0.4)
2023
eiCompare : Compares Different Ecological Inference Methods (Version 3.0.4)
2016
piglet : Program for Inferring Ig Allele Similarity Clusters and
Genotypes (Version 1.0.1)
2023
ggRandomForests : Visually Exploring Random Forests (Version 2.2.1)
2014
ggVennDiagram : A 'ggplot2' Implement of Venn Diagram (Version 1.5.2)
2019
ggfocus : Scales that Focus Specific Levels in your ggplot() (Version 1.0.0)
2018
ggiraphExtra : Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph' (Version 0.3.0)
2016
ggmuller : Create Muller Plots of Evolutionary Dynamics (Version 0.5.6)
2017
ggparallel : Variations of Parallel Coordinate Plots for Categorical Data (Version 0.4.0)
2013
ggpie : Pie, Donut and Rose Pie Plots (Version 0.2.5)
2022
ggplot2 : Create Elegant Data Visualisations Using the Grammar of Graphics (Version 3.5.0)
2007
ggplotgui : Create Ggplots via a Graphical User Interface (Version 1.0.0)
2017
ggpubr : 'ggplot2' Based Publication Ready Plots (Version 0.6.0)
2016
mlearning : Machine Learning Algorithms with Unified Interface and Confusion Matrices (Version 1.2.1)
2013
mlergm : Multilevel Exponential-Family Random Graph Models (Version 0.8)
2018
AMPLE : Shiny Apps to Support Capacity Building on Harvest Control Rules (Version 1.0.2)
2019
ASMap : Linkage Map Construction using the MSTmap Algorithm (Version 1.0-7)
2014
ActivePathways : Integrative Pathway Enrichment Analysis of Multivariate Omics Data (Version 2.0.3)
2019
AgroR : Experimental Statistics and Graphics for Agricultural Sciences (Version 1.3.5)
2021
AlphaPart : Partition/Decomposition of Breeding Values by Paths of Information (Version 0.9.8)
2019
Anaconda : Targeted Differential and Global Enrichment Analysis of Taxonomic Rank by Shared Asvs (Version 0.1.5)
2022
Anthropometry : Statistical Methods for Anthropometric Data (Version 1.19)
2014
AutoPipe : Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis (Version 0.1.6)
2019
BAMBI : Bivariate Angular Mixture Models (Version 2.3.5)
2017
BCEA : Bayesian Cost Effectiveness Analysis (Version 2.4.6)
2012
BayesNetBP : Bayesian Network Belief Propagation (Version 1.6.1)
2017
BayesianPlatformDesignTimeTrend : Simulate and Analyse Bayesian Platform Trial with Time Trend (Version 1.2.3)
2023
BioCircos : Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js' (Version 0.3.4)
2017
BioInsight : Filter and Plot RNA Biotypes (Version 0.3.1)
2020
C443 : See a Forest for the Trees (Version 3.4.0)
2018
CARBayes : Spatial Generalised Linear Mixed Models for Areal Unit Data (Version 6.1.1)
2012
CAST : 'caret' Applications for Spatial-Temporal Models (Version 1.0.0)
2018
CIS.DGLM : Covariates, Interaction, and Selection for DGLM (Version 0.1.0)
2022
CSTools : Assessing Skill of Climate Forecasts on Seasonal-to-Decadal Timescales (Version 5.2.0)
2019
CTD : A Method for 'Connecting The Dots' in Weighted Graphs (Version 1.2)
2020
ChaosGame : Chaos Game (Version 1.4)
2016
ChemoSpec : Exploratory Chemometrics for Spectroscopy (Version 6.1.10)
2011
ChemoSpecUtils : Functions Supporting Packages ChemoSpec and ChemoSpec2D (Version 1.0.4)
2018
Ckmeans.1d.dp : Optimal, Fast, and Reproducible Univariate Clustering (Version 4.3.5)
2010
ColorNameR : Give Colors a Name (Version 0.1.0)
2021
CommKern : Network-Based Communities and Kernel Machine Methods (Version 1.0.1)
2022
Countr : Flexible Univariate Count Models Based on Renewal Processes (Version 3.5.8)
2016
D3partitionR : Interactive Charts of Nested and Hierarchical Data with 'D3.js' (Version 0.5.0)
2016
DClusterm : Model-Based Detection of Disease Clusters (Version 1.0-1)
2017
DIscBIO : A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics (Version 1.2.2)
2020
DR.SC : Joint Dimension Reduction and Spatial Clustering (Version 3.4)
2021
DTAT : Dose Titration Algorithm Tuning (Version 0.3-6)
2019
DTSg : A Class for Working with Time Series Data Based on 'data.table' and 'R6' with Largely Optional Reference Semantics (Version 1.1.3)
2019
DiagrammeR : Graph/Network Visualization (Version 1.0.11)
2015
DoE.base : Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages (Version 1.2-4)
2009
Durga : Effect Size Estimation and Visualisation (Version 2.0)
2023
EGAnet : Exploratory Graph Analysis – a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics (Version 2.0.5)
2019
EHRtemporalVariability : Delineating Temporal Dataset Shifts in Electronic Health Records (Version 1.2.1)
2019
EMCluster : EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution (Version 0.2-15)
2012
EMbC : Expectation-Maximization Binary Clustering (Version 2.0.4)
2015
ENMeval : Automated Tuning and Evaluations of Ecological Niche Models (Version 2.0.4)
2014
ERPM : Exponential Random Partition Models (Version 0.2.0)
2024
ERSA : Exploratory Regression 'Shiny' App (Version 0.1.4)
2018
EdSurvey : Analysis of NCES Education Survey and Assessment Data (Version 4.0.4)
2017
EpiCurve : Plot an Epidemic Curve (Version 2.4-2)
2017
EpiModel : Mathematical Modeling of Infectious Disease Dynamics (Version 2.4.0)
2013
Euclimatch : Euclidean Climatch Algorithm (Version 1.0.1)
2023
FAIRmaterials : Make Materials Data FAIR (Version 0.4.1)
2021
FAST.R : Analyze and Visualize FAST-Generated Data (Version 0.2.1)
2023
FIESTAutils : Utility Functions for Forest Inventory Estimation and Analysis (Version 1.2.2)
2022
FMM : Rhythmic Patterns Modeling by FMM Models (Version 0.3.1)
2021
FRESA.CAD : Feature Selection Algorithms for Computer Aided Diagnosis (Version 3.4.7)
2014
FateID : Quantification of Fate Bias in Multipotent Progenitors (Version 0.2.2)
2017
ForIT : Functions to Estimate Tree Volume and Phytomass in the Italian Forest Inventory 2005 (Version 2.4.0)
2014
ForecastTB : Test Bench for the Comparison of Forecast Methods (Version 1.0.1)
2020
FunCC : Functional Cheng and Church Bi-Clustering (Version 1.0)
2020
GALLO : Genomic Annotation in Livestock for Positional Candidate LOci (Version 1.4)
2020
GGally : Extension to 'ggplot2' (Version 2.2.1)
2010
GGoutlieR : Identify Individuals with Unusual Geo-Genetic Patterns (Version 1.0.2)
2023
GIFT : Access to the Global Inventory of Floras and Traits (GIFT) (Version 1.3.2)
2023
GLMMRR : Generalized Linear Mixed Model (GLMM) for Binary Randomized Response Data (Version 0.5.0)
2016
GMCM : Fast Estimation of Gaussian Mixture Copula Models (Version 1.4)
2014
GOplot : Visualization of Functional Analysis Data (Version 1.0.2)
2015
GWmodel : Geographically-Weighted Models (Version 2.3-2)
2013
GeneSelectR : 'GeneSelectR' - Comprehensive Feature Selection Workflow for Bulk RNAseq Datasets (Version 1.0.1)
2023
GimmeMyPlot : Graphical Utilities for Visualizing and Exploring Data (Version 0.1.0)
2023
GseaVis : Implement for 'GSEA' Enrichment Visualization (Version 0.0.5)
2022
Guerry : Maps, Data and Methods Related to Guerry (1833) "Moral Statistics of France" (Version 1.8.3)
2009
HDXBoxeR : Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data (Version 0.0.1)
2024
HH : Statistical Analysis and Data Display: Heiberger and Holland (Version 3.1-52)
2006
HiveR : 2D and 3D Hive Plots for R (Version 0.3.63)
2011
HodgesTools : Common Use Tools for Genomic Analysis (Version 1.0.0)
2022
ICAMS : In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS') (Version 2.3.12)
2019
IDEAFilter : Agnostic, Idiomatic Data Filter Module for Shiny (Version 0.2.0)
2022
IOHanalyzer : Data Analysis Part of 'IOHprofiler' (Version 0.1.8.10)
2019
ITNr : Analysis of the International Trade Network (Version 0.7.0)
2018
InflectSSP : Melt Curve Fitting and Melt Shift Analysis (Version 1.6)
2021
LBSPR : Length-Based Spawning Potential Ratio (Version 0.1.6)
2016
LDAShiny : User-Friendly Interface for Review of Scientific Literature (Version 0.9.3)
2021
LDLcalc : Calculate and Predict the Low Density Lipoprotein Values (Version 2.1)
2021
LEGIT : Latent Environmental & Genetic InTeraction (LEGIT) Model (Version 1.4.1)
2017
LSRS : Land Surface Remote Sensing (Version 0.2.0)
2017
LambertW : Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data (Version 0.6.9-1)
2009
Linkage : Clustering Communication Networks Using the Stochastic Topic Block Model Through Linkage.fr (Version 0.9)
2022
LinkageMapView : Plot Linkage Group Maps with Quantitative Trait Loci (Version 2.1.2)
2017
LipidomicsR : Elegant Tools for Processing and Visualization of Lipidomics Data (Version 0.1.6)
2024
LoBrA : Generalized Spline Mixed Effect Models for Longitudinal Breath Data (Version 1.0)
2022
LocalControl : Nonparametric Methods for Generating High Quality Comparative Effectiveness Evidence (Version 1.1.3)
2017
MAPA : Multiple Aggregation Prediction Algorithm (Version 2.0.7)
2014
MBNMAdose : Dose-Response MBNMA Models (Version 0.4.2)
2019
MBNMAtime : Run Time-Course Model-Based Network Meta-Analysis (MBNMA) Models (Version 0.2.4)
2019
MCDA : Support for the Multicriteria Decision Aiding Process (Version 0.1.0)
2013
MDSGUI : A GUI for interactive MDS in R (Version 0.1.6)
2013
MDplot : Visualising Molecular Dynamics Analyses (Version 1.0.1)
2016
MIMSunit : Algorithm to Compute Monitor Independent Movement Summary Unit (MIMS-Unit) (Version 0.11.2)
2020
MKmisc : Miscellaneous Functions from M. Kohl (Version 1.9)
2008
MKomics : Omics Data Analysis (Version 0.7)
2020
MSG : Data and Functions for the Book Modern Statistical Graphics (Version 0.8)
2011
MSmix : Finite Mixtures of Mallows Models with Spearman Distance for Full and Partial Rankings (Version 1.0.1)
2024
MantaID : A Machine-Learning Based Tool to Automate the Identification of Biological Database IDs (Version 1.0.2)
2022
MassWateR : Quality Control and Analysis of Massachusetts Water Quality Data (Version 2.1.4)
2023
MetChem : Chemical Structural Similarity Analysis (Version 0.4)
2022
MetaNet : Network Analysis for Omics Data (Version 0.1.2)
2024
MixSIAR : Bayesian Mixing Models in R (Version 3.1.12)
2016
MixfMRI : Mixture fMRI Clustering Analysis (Version 0.1-3)
2018
MoBPS : Modular Breeding Program Simulator (Version 1.6.64)
2020
Mondrian : A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events (Version 1.1-1)
2016
Momocs : Morphometrics using R (Version 1.4.1)
2012
MonoPhy : Explore Monophyly of Taxonomic Groups in a Phylogeny (Version 1.3)
2015
MullerPlot : Generates Muller Plot from Population/Abundance/Frequency Dynamics Data (Version 0.1.3)
2016
MultIS : Reconstruction of Clones from Integration Site Readouts and Visualization (Version 0.6.2)
2021
MultiPhen : A Package to Test for Multi-Trait Association (Version 2.0.3)
2011
NIMAA : Nominal Data Mining Analysis (Version 0.2.1)
2021
NMF : Algorithms and Framework for Nonnegative Matrix Factorization (NMF) (Version 0.27)
2009
NetRep : Permutation Testing Network Module Preservation Across Datasets (Version 1.2.7)
2016
NetworkChange : Bayesian Package for Network Changepoint Analysis (Version 0.8)
2017
NipponMap : Japanese Map Data and Functions (Version 0.2)
2017
OTclust : Mean Partition, Uncertainty Assessment, Cluster Validation and Visualization Selection for Cluster Analysis (Version 1.0.6)
2019
OUwie : Analysis of Evolutionary Rates in an OU Framework (Version 2.10)
2011
OpenRepGrid.ic : Interpretive Clustering for Repertory Grids (Version 0.6.2)
2020
PAFit : Generative Mechanism Estimation in Temporal Complex Networks (Version 1.2.10)
2015
PAMhm : Generate Heatmaps Based on Partitioning Around Medoids (PAM) (Version 0.1.2)
2021
PPforest : Projection Pursuit Classification Forest (Version 0.1.3)
2017
PPtreeregViz : Projection Pursuit Regression Tree Visualization (Version 2.0.5)
2022
PROreg : Patient Reported Outcomes Regression Analysis (Version 1.3)
2017
PST : Probabilistic Suffix Trees and Variable Length Markov Chains (Version 0.94.1)
2012
PTXQC : Quality Report Generation for MaxQuant and mzTab Results (Version 1.1.1)
2016
PWEXP : Piecewise Exponential Distribution Prediction Model (Version 0.5.0)
2023
PairViz : Visualization using Graph Traversal (Version 1.3.6)
2008
PerformanceAnalytics : Econometric Tools for Performance and Risk Analysis (Version 2.0.4)
2007
Plasmidprofiler : Visualization of Plasmid Profile Results (Version 0.1.6)
2017
PointedSDMs : Fit Models Derived from Point Processes to Species Distributions using 'inlabru' (Version 1.3.2)
2022
Polychrome : Qualitative Palettes with Many Colors (Version 1.5.1)
2017
PubMedWordcloud : 'Pubmed' Word Clouds (Version 0.3.6)
2013
QGameTheory : Quantum Game Theory Simulator (Version 0.1.2)
2020
QurvE : Robust and User-Friendly Analysis of Growth and Fluorescence Curves (Version 1.1.1)
2023
RFLPtools : Tools to Analyse RFLP Data (Version 2.0)
2010
RIbench : Benchmark Suite for Indirect Methods for RI Estimation (Version 1.0.2)
2022
RMaCzek : Czekanowski's Diagrams (Version 1.5.1)
2019
RNAseqQC : Quality Control for RNA-Seq Data (Version 0.1.4)
2022
RNCEP : Obtain, Organize, and Visualize NCEP Weather Data (Version 1.0.10)
2011
RPANDA : Phylogenetic ANalyses of DiversificAtion (Version 2.3)
2014
RRF : Regularized Random Forest (Version 1.9.4)
2011
RRphylo : Phylogenetic Ridge Regression Methods for Comparative Studies (Version 2.8.0)
2018
RSA : Response Surface Analysis (Version 0.10.6)
2013
RZooRoH : Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes (Version 0.3.2.1)
2018
RaceID : Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.5)
2018
Radviz : Project Multidimensional Data in 2D Space (Version 0.9.3)
2016
RawHummus : Raw Data Quality Control Tool for LC-MS System (Version 0.3.3)
2021
RcmdrPlugin.KMggplot2 : R Commander Plug-in for Data Visualization with 'ggplot2' (Version 0.2-6)
2012
RcmdrPlugin.temis : Graphical Integrated Text Mining Solution (Version 0.7.10)
2013
Rediscover : Identify Mutually Exclusive Mutations (Version 0.3.2)
2021
RestoreNet : Random-Effects Stochastic Reaction Networks (Version 1.0.1)
2022
RgoogleMaps : Overlays on Static Maps (Version 1.5.1)
2009
RobLox : Optimally Robust Influence Curves and Estimators for Location and Scale (Version 1.2.1)
2007
RobLoxBioC : Infinitesimally Robust Estimators for Preprocessing -Omics Data (Version 1.2.2)
2010
RobMixReg : Robust Mixture Regression (Version 1.1.0)
2020
SANple : Fitting Shared Atoms Nested Models via Markov Chains Monte Carlo (Version 0.1.0)
2023
SANvi : Fitting Shared Atoms Nested Models via Variational Bayes (Version 0.1.0)
2023
SCORPIUS : Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data (Version 1.0.9)
2018
SCpubr : Generate Publication Ready Visualizations of Single Cell Transcriptomics Data (Version 2.0.2)
2022
SHAPforxgboost : SHAP Plots for 'XGBoost' (Version 0.1.3)
2019
SISIR : Select Intervals Suited for Functional Regression (Version 0.2.2)
2020
SMDIC : Identification of Somatic Mutation-Driven Immune Cells (Version 0.1.5)
2020
SPLICE : Synthetic Paid Loss and Incurred Cost Experience (SPLICE) Simulator (Version 1.1.2)
2021
SSIMmap : The Structural Similarity Index Measure for Maps (Version 0.1.1)
2023
STMotif : Discovery of Motifs in Spatial-Time Series (Version 2.0.2)
2018
SUMMER : Small-Area-Estimation Unit/Area Models and Methods for Estimation in R (Version 1.4.0)
2017
SWMPr : Retrieving, Organizing, and Analyzing Estuary Monitoring Data (Version 2.5.0)
2015
SWMPrExtension : Functions for Analyzing and Plotting Estuary Monitoring Data (Version 2.2.5.1)
2018
SeaVal : Validation of Seasonal Weather Forecasts (Version 1.1.1)
2023
Seurat : Tools for Single Cell Genomics (Version 5.0.3)
2017
ShapleyOutlier : Multivariate Outlier Explanations using Shapley Values and Mahalanobis Distances (Version 0.1.1)
2022
SigTree : Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree (Version 1.10.6)
2013
SignacX : Cell Type Identification and Discovery from Single Cell Gene Expression Data (Version 2.2.5)
2021
SimBIID : Simulation-Based Inference Methods for Infectious Disease Models (Version 0.2.1)
2019
SpaDES.core : Core Utilities for Developing and Running Spatially Explicit Discrete Event Models (Version 2.0.5)
2017
SpatMCA : Regularized Spatial Maximum Covariance Analysis (Version 1.0.4)
2016
SpatPCA : Regularized Principal Component Analysis for Spatial Data (Version 1.3.5)
2015
SqueakR : An Experiment Interface for 'DeepSqueak' Bioacoustics Research (Version 1.3.0)
2022
StMoMo : Stochastic Mortality Modelling (Version 0.4.1)
2015
SynthETIC : Synthetic Experience Tracking Insurance Claims (Version 1.1.0)
2020
Sysrecon : Systematical Metabolic Reconstruction (Version 0.1.3)
2022
TCIU : Spacekime Analytics, Time Complexity and Inferential Uncertainty (Version 1.2.5)
2020
TELP : Social Representation Theory Application: The Free Evocation of Words Technique (Version 1.0.2)
2016
TOmicsVis : Transcriptome Visualization Process Scheme (Version 2.0.0)
2023
TPMplt : Tool-Kit for Dynamic Materials Model and Thermal Processing Maps (Version 0.1.4)
2018
TSstudio : Functions for Time Series Analysis and Forecasting (Version 0.1.7)
2018
TextForecast : Regression Analysis and Forecasting Using Textual Data from a Time-Varying Dictionary (Version 0.1.3)
2019
TextMiningGUI : Text Mining GUI Interface (Version 0.3)
2020
TraMineR : Trajectory Miner: a Sequence Analysis Toolkit (Version 2.2-9)
2008
TraMineRextras : TraMineR Extension (Version 0.6.7)
2013
TrackReconstruction : Reconstruct Animal Tracks from Magnetometer, Accelerometer, Depth and Optional Speed Data (Version 1.3)
2014
TreeDimensionTest : Trajectory Presence and Heterogeneity in Multivariate Data (Version 0.0.2)
2022
UBayFS : A User-Guided Bayesian Framework for Ensemble Feature Selection (Version 1.0)
2023
UCSCXenaShiny : Interactive Analysis of UCSC Xena Data (Version 2.0.0)
2019
VOSONDash : User Interface for Collecting and Analysing Social Networks (Version 0.5.7)
2019
WRTDStidal : Weighted Regression for Water Quality Evaluation in Tidal Waters (Version 1.1.4)
2016
Wats : Wrap Around Time Series Graphics (Version 1.0.1)
2013
WaverideR : Extracting Signals from Wavelet Spectra (Version 0.3.2)
2023
WeightedCluster : Clustering of Weighted Data (Version 1.6-4)
2013
WrightMap : IRT Item-Person Map with 'ConQuest' Integration (Version 1.3)
2014
ZetaSuite : Analyze High-Dimensional High-Throughput Dataset and Quality Control Single-Cell RNA-Seq (Version 1.0.1)
2022
abtest : Bayesian A/B Testing (Version 1.0.1)
2019
actxps : Create Actuarial Experience Studies: Prepare Data, Summarize Results, and Create Reports (Version 1.4.0)
2022
add2ggplot : Add to 'ggplot2' (Version 0.3.0)
2020
adegraphics : An S4 Lattice-Based Package for the Representation of Multivariate Data (Version 1.0-21)
2015
airt : Evaluation of Algorithm Collections Using Item Response Theory (Version 0.2.2)
2020
animbook : Visualizing Changes in Performance Measures and Demographic Affiliations using Animation (Version 1.0.0)
2023
animint2 : Animated Interactive Grammar of Graphics (Version 2024.1.24)
2019
anipaths : Animation of Multiple Trajectories with Uncertainty (Version 0.10.3)
2017
aplotExtra : Creating Composite Plots using 'aplot' (Version 0.0.2)
2023
aqp : Algorithms for Quantitative Pedology (Version 2.0.2)
2010
aroma.affymetrix : Analysis of Large Affymetrix Microarray Data Sets (Version 3.2.2)
2009
aroma.core : Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework (Version 3.3.1)
2009
asremlPlus : Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction Differences (Version 4.4.32)
2015
asymmetry : Multidimensional Scaling of Asymmetric Proximities (Version 2.0.4)
2016
atime : Asymptotic Timing (Version 2024.4.12)
2022
autoGO : Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations (Version 0.9.1)
2023
autohrf : Automated Generation of Data-Informed GLM Models in Task-Based fMRI Data Analysis (Version 1.1.3)
2022
avidaR : A Computational Biologist’s Toolkit To Get Data From 'avidaDB' (Version 1.2.0)
2022
aweSOM : Interactive Self-Organizing Maps (Version 1.3)
2021
bReeze : Functions for Wind Resource Assessment (Version 0.4-4)
2012
basket : Basket Trial Analysis (Version 0.10.11)
2019
bayesplot : Plotting for Bayesian Models (Version 1.11.1)
2016
bbl : Boltzmann Bayes Learner (Version 1.0.0)
2019
beast : Bayesian Estimation of Change-Points in the Slope of Multivariate Time-Series (Version 1.1)
2017
berryFunctions : Function Collection Related to Plotting and Hydrology (Version 1.22.5)
2014
bigDM : Scalable Bayesian Disease Mapping Models for High-Dimensional Data (Version 0.5.3)
2022
bigMap : Big Data Mapping (Version 2.3.1)
2019
billboarder : Create Interactive Chart with the JavaScript 'Billboard' Library (Version 0.4.1)
2017
bipartiteD3 : Interactive Bipartite Graphs (Version 0.3.0)
2018
bispdep : Statistical Tools for Bivariate Spatial Dependence Analysis (Version 1.0-0)
2024
bliss : Bayesian Functional Linear Regression with Sparse Step Functions (Version 1.0.4)
2019
bmstdr : Bayesian Modeling of Spatio-Temporal Data with R (Version 0.7.9)
2022
bnmonitor : An Implementation of Sensitivity Analysis in Bayesian Networks (Version 0.1.4)
2021
bnpsd : Simulate Genotypes from the BN-PSD Admixture Model (Version 1.3.13)
2018
bodenmiller : Profiling of Peripheral Blood Mononuclear Cells using CyTOF (Version 0.1.1)
2015
brinton : A Graphical EDA Tool (Version 0.2.7)
2019
bulkAnalyseR : Interactive Shiny App for Bulk Sequencing Data (Version 1.1.0)
2022
c3 : 'C3.js' Chart Library (Version 0.3.0)
2018
caROC : Continuous Biomarker Evaluation with Adjustment of Covariates (Version 0.1.5)
2021
caRecall : Government of Canada Vehicle Recalls Database API Wrapper (Version 0.1.0)
2021
canadianmaps : Effortlessly Create Stunning Canadian Maps (Version 2.0.0)
2022
cape : Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice (Version 3.1.2)
2013
catdap : Categorical Data Analysis Program Package (Version 1.3.7)
2016
causalDisco : Tools for Causal Discovery on Observational Data (Version 0.9.1)
2022
ceRtainty : Certainty Equivalent (Version 1.0.0)
2019
cholera : Amend, Augment and Aid Analysis of John Snow's Cholera Map (Version 0.8.0)
2017
ciftiTools : Tools for Reading, Writing, Viewing and Manipulating CIFTI Files (Version 0.14.0)
2020
cinaR : A Computational Pipeline for Bulk 'ATAC-Seq' Profiles (Version 0.2.3)
2020
circumplex : Analysis and Visualization of Circular Data (Version 0.3.10)
2018
citrus : Customer Intelligence Tool for Rapid Understandable Segmentation (Version 1.0.2)
2021
clifro : Easily Download and Visualise Climate Data from CliFlo (Version 3.2-5)
2015
clustMixType : k-Prototypes Clustering for Mixed Variable-Type Data (Version 0.3-14)
2016
clusterCons : Consensus Clustering using Multiple Algorithms and Parameters (Version 1.2)
2010
cmsafvis : Tools to Visualize CM SAF NetCDF Data (Version 1.2.3)
2020
coca : Cluster-of-Clusters Analysis (Version 1.1.0)
2020
collapsibleTree : Interactive Collapsible Tree Diagrams using 'D3.js' (Version 0.1.8)
2017
colorist : Coloring Wildlife Distributions in Space-Time (Version 0.1.2)
2020
colorspace : A Toolbox for Manipulating and Assessing Colors and Palettes (Version 2.1-0)
2005
communication : Feature Extraction and Model Estimation for Audio of Human Speech (Version 0.1)
2021
comradesOO : Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data (Version 0.1.1)
2023
condvis2 : Interactive Conditional Visualization for Supervised and Unsupervised Models in Shiny (Version 0.1.2)
2019
condvis : Conditional Visualization for Statistical Models (Version 0.5-1)
2016
contourPlot : Plots x,y,z Co-Ordinates in a Contour Map (Version 0.2.0)
2020
convdistr : Convolute Probabilistic Distributions (Version 1.6.1)
2021
cophescan : Adaptation of the Coloc Method for PheWAS (Version 1.4.0)
2023
corkscrew : Preprocessor for Data Modeling (Version 1.1)
2015
cornet : Elastic Net with Dichotomised Outcomes (Version 0.0.9)
2019
corporaexplorer : A 'Shiny' App for Exploration of Text Collections (Version 0.8.6)
2019
corrplot : Visualization of a Correlation Matrix (Version 0.92)
2010
curvir : Specify Reserve Demand Curves (Version 0.1.1)
2023
cvCovEst : Cross-Validated Covariance Matrix Estimation (Version 1.2.2)
2021
cytofan : Plot Fan Plots for Cytometry Data using 'ggplot2' (Version 0.1.0)
2018
dartR.base : Analysing 'SNP' and 'Silicodart' Data - Basic Functions (Version 0.65)
2023
dartR : Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis (Version 2.9.7)
2017
datacleanr : Interactive and Reproducible Data Cleaning (Version 1.0.3)
2020
ddsPLS : Data-Driven Sparse Partial Least Squares (Version 1.2.1)
2018
deBInfer : Bayesian Inference for Differential Equations (Version 0.4.4)
2016
deTS : Tissue-Specific Enrichment Analysis (Version 1.0)
2019
deckgl : An R Interface to 'deck.gl' (Version 0.3.0)
2018
dendroNetwork : Create Networks of Dendrochronological Series using Pairwise Similarity (Version 0.5.4)
2024
dendsort : Modular Leaf Ordering Methods for Dendrogram Nodes (Version 0.3.4)
2014
densityClust : Clustering by Fast Search and Find of Density Peaks (Version 0.3.3)
2014
diceR : Diverse Cluster Ensemble in R (Version 2.2.0)
2017
diffudist : Diffusion Distance for Complex Networks (Version 1.0.1)
2021
directlabels : Direct Labels for Multicolor Plots (Version 2024.1.21)
2010
disaggR : Two-Steps Benchmarks for Time Series Disaggregation (Version 1.0.5.2)
2020
distantia : Assessing Dissimilarity Between Multivariate Time Series (Version 1.0.2)
2019
diversityForest : Innovative Complex Split Procedures in Random Forests Through Candidate Split Sampling (Version 0.4.0)
2020
dlstats : Download Stats of R Packages (Version 0.1.7)
2016
dotCall64 : Enhanced Foreign Function Interface Supporting Long Vectors (Version 1.1-1)
2016
dowser : B Cell Receptor Phylogenetics Toolkit (Version 2.1.0)
2021
dplR : Dendrochronology Program Library in R (Version 1.7.6)
2007
dualScale : Dual Scaling Analysis of Data (Version 1.0.0)
2014
dynRB : Dynamic Range Boxes (Version 0.18)
2015
eSDM : Ensemble Tool for Predictions from Species Distribution Models (Version 0.4.1)
2019
easyalluvial : Generate Alluvial Plots with a Single Line of Code (Version 0.3.2)
2018
easylabel : Interactive Scatter Plot and Volcano Plot Labels (Version 0.2.8)
2021
ebirdst : Access and Analyze eBird Status and Trends Data Products (Version 3.2022.3)
2019
ecoCopula : Graphical Modelling and Ordination using Copulas (Version 1.0.2)
2020
ecocomDP : Tools to Create, Use, and Convert ecocomDP Data (Version 1.3.1)
2021
ecopower : Power Estimates and Equivalence Testing for Multivariate Data (Version 0.2.0)
2021
ecoregime : Analysis of Ecological Dynamic Regimes (Version 0.1.3)
2023
ecotraj : Ecological Trajectory Analysis (Version 0.1.1)
2021
einet : Effective Information and Causal Emergence (Version 0.1.0)
2020
enviGCMS : GC/LC-MS Data Analysis for Environmental Science (Version 0.7.1)
2016
epiR : Tools for the Analysis of Epidemiological Data (Version 2.0.73)
2008
ergm.ego : Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data (Version 1.1.0)
2016
escalation : A Modular Approach to Dose-Finding Clinical Trials (Version 0.1.8)
2020
explor : Interactive Interfaces for Results Exploration (Version 0.3.10)
2015
expm : Matrix Exponential, Log, 'etc' (Version 0.999-9)
2010
expowo : Data Mining of Plant Diversity and Distribution (Version 2.0)
2023
extremeStat : Extreme Value Statistics and Quantile Estimation (Version 1.5.9)
2016
fabMix : Overfitting Bayesian Mixtures of Factor Analyzers with Parsimonious Covariance and Unknown Number of Components (Version 5.1)
2018
factorstochvol : Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models (Version 1.1.0)
2016
fdaSP : Sparse Functional Data Analysis Methods (Version 1.1.1)
2023
figuRes2 : Support for a Variety of Figure Production Tasks (Version 1.0.0)
2022
finnsurveytext : Analyse Open-Ended Survey Responses in Finnish (Version 1.0.0)
2024
fnets : Factor-Adjusted Network Estimation and Forecasting for High-Dimensional Time Series (Version 0.1.6)
2023
fsbrain : Managing and Visualizing Brain Surface Data (Version 0.5.5)
2019
funModeling : Exploratory Data Analysis and Data Preparation Tool-Box (Version 1.9.5)
2016
funkyheatmap : Generating Funky Heatmaps for Data Frames (Version 0.5.0)
2022
gapmap : Drawing Gapped Cluster Heatmaps with 'ggplot2' (Version 1.0.0)
2014
gdalUtilities : Wrappers for 'GDAL' Utilities Executables (Version 1.2.5)
2019
genBaRcode : Analysis and Visualization Tools for Genetic Barcode Data (Version 1.2.7)
2017
geocmeans : Implementing Methods for Spatial Fuzzy Unsupervised Classification (Version 0.3.4)
2021
geojsonio : Convert Data from and to 'GeoJSON' or 'TopoJSON' (Version 0.11.3)
2015
getspres : SPRE Statistics for Exploring Heterogeneity in Meta-Analysis (Version 0.2.0)
2019
ggalt : Extra Coordinate Systems, 'Geoms', Statistical Transformations, Scales and Fonts for 'ggplot2' (Version 0.4.0)
2016
glottospace : Language Mapping and Geospatial Analysis of Linguistic and Cultural Data (Version 0.0.112)
2022
gmGeostats : Geostatistics for Compositional Analysis (Version 0.11.3)
2020
gnn : Generative Neural Networks (Version 0.0-4)
2019
grandR : Comprehensive Analysis of Nucleotide Conversion Sequencing Data (Version 0.2.5)
2022
granovaGG : Graphical Analysis of Variance Using ggplot2 (Version 1.4.1)
2011
grapesAgri1 : Collection of Shiny Apps for Agricultural Research Data Analysis (Version 1.1.0)
2021
gravitas : Explore Probability Distributions for Bivariate Temporal Granularities (Version 0.1.3)
2019
growthPheno : Functional Analysis of Phenotypic Growth Data to Smooth and Extract Traits (Version 2.1.24)
2019
gsbm : Estimate Parameters in the Generalized SBM (Version 0.2.2)
2020
gt : Easily Create Presentation-Ready Display Tables (Version 0.10.1)
2020
gwaRs : Manhattan, Q-Q, and PCA Plots using 'ggplot2' (Version 0.3.0)
2021
hbamr : Hierarchical Bayesian Aldrich-McKelvey Scaling via 'Stan' (Version 2.3.0)
2023
hdrcde : Highest Density Regions and Conditional Density Estimation (Version 3.4)
2005
heatmapFlex : Tools to Generate Flexible Heatmaps (Version 0.1.2)
2021
heatmaply : Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2' (Version 1.5.0)
2016
heiscore : Score and Plot the Healthy Eating Index from NHANES Data (Version 0.0.1)
2024
hfr : Estimate Hierarchical Feature Regression Models (Version 0.7.1)
2022
hierarchicalSets : Set Data Visualization Using Hierarchies (Version 1.0.4)
2016
hilldiv : Integral Analysis of Diversity Based on Hill Numbers (Version 1.5.1)
2019
hockeystick : Download and Visualize Essential Climate Change Data (Version 0.8.4)
2021
httk : High-Throughput Toxicokinetics (Version 2.3.1)
2015
hurricaneexposure : Explore and Map County-Level Hurricane Exposure in the United States (Version 0.1.1)
2017
iCellR : Analyzing High-Throughput Single Cell Sequencing Data (Version 1.6.7)
2019
iNZightPlots : Graphical Tools for Exploring Data with 'iNZight' (Version 2.15.3)
2020
idendr0 : Interactive Dendrograms (Version 1.5.3)
2015
iheatmapr : Interactive, Complex Heatmaps (Version 0.7.1)
2017
imageData : Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer (Version 0.1-62)
2016
immuneSIM : Tunable Simulation of B- And T-Cell Receptor Repertoires (Version 0.8.7)
2019
imsig : Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours (Version 1.1.3)
2018
injurytools : A Toolkit for Sports Injury Data Analysis (Version 1.0.3)
2023
inlabru : Bayesian Latent Gaussian Modelling using INLA and Extensions (Version 2.10.1)
2017
inpdfr : Analyse Text Documents Using Ecological Tools (Version 0.1.12)
2016
intSDM : Reproducible Integrated Species Distribution Models Across Norway using 'INLA' (Version 2.0.2)
2022
interflex : Multiplicative Interaction Models Diagnostics and Visualization (Version 1.2.6)
2017
interpretCI : Estimate the Confidence Interval and Interpret Step by Step (Version 0.1.1)
2022
ipsRdbs : Introduction to Probability, Statistics and R for Data-Based Sciences (Version 1.0.0)
2023
itol.toolkit : Helper Functions for 'Interactive Tree Of Life' (Version 1.1.7)
2023
ixplorer : Easy DataOps for R Users (Version 0.2.2)
2022
jcext : Extended Classification of Weather Types (Version 0.1.1)
2018
jmvcore : Dependencies for the 'jamovi' Framework (Version 2.4.7)
2017
jsmodule : 'RStudio' Addins and 'Shiny' Modules for Medical Research (Version 1.5.3)
2019
jtools : Analysis and Presentation of Social Scientific Data (Version 2.2.2)
2017
kcpRS : Kernel Change Point Detection on the Running Statistics (Version 1.1.1)
2019
kitagawa : Spectral Response of Water Wells to Harmonic Strain and Pressure Signals (Version 3.1.2)
2012
klic : Kernel Learning Integrative Clustering (Version 1.0.4)
2020
kyotil : Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies (Version 2024.1-30)
2013
latticeExtra : Extra Graphical Utilities Based on Lattice (Version 0.6-30)
2004
ldaPrototype : Prototype of Multiple Latent Dirichlet Allocation Runs (Version 0.3.1)
2020
lddmm : Longitudinal Drift-Diffusion Mixed Models (LDDMM) (Version 0.4.2)
2021
leaflet : Create Interactive Web Maps with the JavaScript 'Leaflet' Library (Version 2.2.2)
2015
leiden : R Implementation of Leiden Clustering Algorithm (Version 0.4.3.1)
2019
lemna : Lemna Ecotox Effect Model (Version 1.0.1)
2021
linkcomm : Tools for Generating, Visualizing, and Analysing Link Communities in Networks (Version 1.0-14)
2011
loa : Lattice Options and Add-Ins (Version 0.2.48.3)
2014
longreadvqs : Viral Quasispecies Comparison from Long-Read Sequencing Data (Version 0.1.2)
2024
loon : Interactive Statistical Data Visualization (Version 1.4.1)
2017
lulcc : Land Use Change Modelling in R (Version 1.0.4)
2015
lvplot : Letter Value 'Boxplots' (Version 0.2.1)
2006
mHMMbayes : Multilevel Hidden Markov Models Using Bayesian Estimation (Version 1.1.0)
2019
makeFlow : Visualizing Sequential Classifications (Version 1.0.2)
2016
mandelbrot : Generates Views on the Mandelbrot Set (Version 0.2.0)
2017
mapStats : Geographic Display of Survey Data Statistics (Version 3.1)
2014
mapchina : China Administrative Divisions Geospatial Shapefile Data (Version 0.1.0)
2020
mapmisc : Utilities for Producing Maps (Version 2.1.0)
2013
marcher : Migration and Range Change Estimation in R (Version 0.0-2)
2017
mau : Decision Models with Multi Attribute Utility Theory (Version 0.1.2)
2017
mboost : Model-Based Boosting (Version 2.9-9)
2006
mccca : Visualizing Class Specific Heterogeneous Tendencies in Categorical Data (Version 1.1.0.1)
2022
mem : The Moving Epidemic Method (Version 2.18)
2010
memapp : The Moving Epidemic Method Web Application (Version 2.16)
2017
metafolio : Metapopulation Simulations for Conserving Salmon Through Portfolio Optimization (Version 0.1.2)
2014
metamicrobiomeR : Microbiome Data Analysis & Meta-Analysis with GAMLSS-BEZI & Random Effects (Version 1.2)
2019
metanetwork : Handling and Representing Trophic Networks in Space and Time (Version 0.7.0)
2022
metaviz : Forest Plots, Funnel Plots, and Visual Funnel Plot Inference for Meta-Analysis (Version 0.3.1)
2017
metricsgraphics : Create Interactive Charts with the JavaScript 'MetricsGraphics' Library (Version 0.9.0)
2015
microeco : Microbial Community Ecology Data Analysis (Version 1.6.0)
2020
micromap : Linked Micromap Plots (Version 1.9.8)
2012
micromapST : Linked Micromap Plots for U. S. and Other Geographic Areas (Version 3.0.2)
2013
mixgb : Multiple Imputation Through 'XGBoost' (Version 1.0.2)
2022
moreparty : A Toolbox for Conditional Inference Trees and Random Forests (Version 0.4)
2020
mosum : Moving Sum Based Procedures for Changes in the Mean (Version 1.2.7)
2018
motifr : Motif Analysis in Multi-Level Networks (Version 1.0.0)
2020
mousetrap : Process and Analyze Mouse-Tracking Data (Version 3.2.3)
2016
mstate : Data Preparation, Estimation and Prediction in Multi-State Models (Version 0.3.2)
2009
mstherm : Analyze MS/MS Protein Melting Data (Version 0.4.7)
2017
multiDimBio : Multivariate Analysis and Visualization for Biological Data (Version 1.2.2)
2013
multinet : Analysis and mining of multilayer social networks (Version 4.1.2)
2017
multinomialLogitMix : Clustering Multinomial Count Data under the Presence of Covariates (Version 1.1)
2022
multiview : Cooperative Learning for Multi-View Analysis (Version 0.8)
2022
mvtsplot : Multivariate Time Series Plot (Version 1.0-4)
2012
myTAI : Evolutionary Transcriptomics (Version 0.9.3)
2014
naijR : Operations to Ease Data Analyses Specific to Nigeria (Version 0.6.0)
2020
nbTransmission : Naive Bayes Transmission Analysis (Version 1.1.4)
2020
networkABC : Network Reverse Engineering with Approximate Bayesian Computation (Version 0.8-1)
2019
networktools : Tools for Identifying Important Nodes in Networks (Version 1.5.2)
2017
nlcv : Nested Loop Cross Validation (Version 0.3.5)
2017
noaastormevents : Explore NOAA Storm Events Database (Version 0.2.0)
2017
nodiv : Compares the Distribution of Sister Clades Through a Phylogeny (Version 1.4.2)
2014
noisemodel : Noise Models for Classification Datasets (Version 1.0.2)
2022
noisySBM : Noisy Stochastic Block Mode: Graph Inference by Multiple Testing (Version 0.1.4)
2020
noisysbmGGM : Noisy Stochastic Block Model for GGM Inference (Version 0.1.2.3)
2024
nuts : Convert European Regional Data (Version 1.0.0)
2024
nvmix : Multivariate Normal Variance Mixtures (Version 0.1-1)
2018
oaColors : OpenAnalytics Colors Package (Version 0.0.4)
2015
oaPlots : OpenAnalytics Plots Package (Version 0.0.25)
2015
occCite : Querying and Managing Large Biodiversity Occurrence Datasets (Version 0.5.6)
2020
oddstream : Outlier Detection in Data Streams (Version 0.5.0)
2019
ogrdbstats : Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics (Version 0.5.0)
2023
onemap : Construction of Genetic Maps in Experimental Crosses (Version 3.0.0)
2008
ontophylo : Ontology-Informed Phylogenetic Comparative Analyses (Version 1.1.3)
2023
opera : Online Prediction by Expert Aggregation (Version 1.2.0)
2016
ordinalLBM : Co-Clustering of Ordinal Data via Latent Continuous Random Variables (Version 1.0)
2019
pathwayTMB : Pathway Based Tumor Mutational Burden (Version 0.1.3)
2021
pctax : Professional Comprehensive Omics Data Analysis (Version 0.1.1)
2024
pcutils : Some Useful Functions for Statistics and Visualization (Version 0.2.5)
2023
pems.utils : Portable Emissions (and Other Mobile) Measurement System Utilities (Version 0.2.29.1)
2016
petersenlab : A Collection of R Functions by the Petersen Lab (Version 1.0.0)
2024
phase1PRMD : Personalized Repeated Measurement Design for Phase I Clinical Trials (Version 1.0.2)
2019
phdcocktail : Enhance the Ease of R Experience as an Emerging Researcher (Version 0.1.0)
2023
pheatmap : Pretty Heatmaps (Version 1.0.12)
2010
phenmod : Auxiliary Functions for Phenological Data Processing, Modelling and Result Handling (Version 1.2-7)
2013
phylosamp : Sample Size Calculations for Molecular and Phylogenetic Studies (Version 1.0.1)
2021
phytools : Phylogenetic Tools for Comparative Biology (and Other Things) (Version 2.1-1)
2011
pkggraph : A Consistent and Intuitive Platform to Explore the Dependencies of Packages on the Comprehensive R Archive Network Like Repositories (Version 0.2.3)
2017
platetools : Tools and Plots for Multi-Well Plates (Version 0.1.7)
2016
pleiotest : Fast Sequential Pleiotropy Test (Version 1.0.0)
2021
plfMA : A GUI to View, Design and Export Various Graphs of Data (Version 2.0)
2015
plotluck : 'ggplot2' Version of "I'm Feeling Lucky!" (Version 1.1.1)
2016
plotly : Create Interactive Web Graphics via 'plotly.js' (Version 4.10.4)
2015
plutor : Useful Functions for Visualization (Version 0.1.0)
2023
pmartR : Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data (Version 2.4.4)
2023
pmd : Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted Analysis and Reactomics Analysis (Version 0.2.1)
2018
polymapR : Linkage Analysis in Outcrossing Polyploids (Version 1.1.5)
2017
polyqtlR : QTL Analysis in Autopolyploid Bi-Parental F1 Populations (Version 0.1.1)
2020
poolABC : Approximate Bayesian Computation with Pooled Sequencing Data (Version 1.0.0)
2023
popkin : Estimate Kinship and FST under Arbitrary Population Structure (Version 1.3.23)
2018
pqantimalarials : web tool for estimating under-five deaths caused by poor-quality antimalarials in sub-Saharan Africa (Version 0.2)
2014
prettyglm : Pretty Summaries of Generalized Linear Model Coefficients (Version 1.0.1)
2021
processanimateR : Process Map Token Replay Animation (Version 1.0.5)
2018
profExtrema : Compute and Visualize Profile Extrema Functions (Version 0.2.1)
2018
profileR : Profile Analysis of Multivariate Data in R (Version 0.3-5)
2013
protag : Search Tagged Peptides & Draw Highlighted Mass Spectra (Version 1.0.0)
2019
psd : Adaptive, Sine-Multitaper Power Spectral Density and Cross Spectrum Estimation (Version 2.1.1)
2013
ptable : Generation of Perturbation Tables for the Cell-Key Method (Version 1.0.0)
2023
pvLRT : Likelihood Ratio Test-Based Approaches to Pharmacovigilance (Version 0.5.1)
2021
qdap : Bridging the Gap Between Qualitative Data and Quantitative Analysis (Version 2.4.6)
2013
qrmtools : Tools for Quantitative Risk Management (Version 0.0-17)
2015
qtl2ggplot : Data Visualization for QTL Experiments (Version 1.2.4)
2021
quanteda.textplots : Plots for the Quantitative Analysis of Textual Data (Version 0.94.4)
2020
quantregForest : Quantile Regression Forests (Version 1.3-7)
2006
quickPlot : A System of Plotting Optimized for Speed and Modularity (Version 1.0.2)
2017
rKIN : (Kernel) Isotope Niche Estimation (Version 1.0.2)
2017
rSpectral : Spectral Modularity Clustering (Version 1.0.0.10)
2022
rTPC : Fitting and Analysing Thermal Performance Curves (Version 1.0.4)
2023
rafalib : Convenience Functions for Routine Data Exploration (Version 1.0.0)
2015
ragtop : Pricing Equity Derivatives with Extensions of Black-Scholes (Version 1.1.1)
2016
randomForest : Breiman and Cutler's Random Forests for Classification and Regression (Version 4.7-1.1)
2002
raptr : Representative and Adequate Prioritization Toolkit in R (Version 1.0.1)
2016
rasterVis : Visualization Methods for Raster Data (Version 0.51.6)
2011
rasterdiv : Diversity Indices for Numerical Matrices (Version 0.3.4)
2020
rattle : Graphical User Interface for Data Science in R (Version 5.5.1)
2013
raw : R Actuarial Workshops (Version 0.1.8)
2016
ref.ICAR : Objective Bayes Intrinsic Conditional Autoregressive Model for Areal Data (Version 2.0.1)
2018
refreg : Conditional Multivariate Reference Regions (Version 0.1.1)
2021
refund : Regression with Functional Data (Version 0.1-35)
2010
rfm : Recency, Frequency and Monetary Value Analysis (Version 0.3.0)
2018
rlc : Create Interactive Linked Charts with Minimal Code (Version 0.5.0)
2019
rliger : Linked Inference of Genomic Experimental Relationships (Version 2.0.1)
2021
rmcorr : Repeated Measures Correlation (Version 0.6.0)
2016
rnaCrosslinkOO : Analysis of RNA Crosslinking Data (Version 0.1.2)
2024
rnpn : Interface to the National 'Phenology' Network 'API' (Version 1.2.8.0)
2016
robber : Using Block Model to Estimate the Robustness of Ecological Network (Version 0.2.4)
2021
robustbase : Basic Robust Statistics (Version 0.99-2)
2006
robustlmm : Robust Linear Mixed Effects Models (Version 3.3-1)
2013
rtsplot : Time Series Plot (Version 0.1.5)
2018
rworldmap : Mapping Global Data (Version 1.3-8)
2010
safetyCharts : Charts for Monitoring Clinical Trial Safety (Version 0.3.0)
2021
scDiffCom : Differential Analysis of Intercellular Communication from scRNA-Seq Data (Version 1.0.0)
2021
scITD : Single-Cell Interpretable Tensor Decomposition (Version 1.0.4)
2021
scales : Scale Functions for Visualization (Version 1.3.0)
2011
segclust2d : Bivariate Segmentation/Clustering Methods and Tools (Version 0.3.1)
2018
sentopics : Tools for Joint Sentiment and Topic Analysis of Textual Data (Version 0.7.3)
2022
separationplot : Separation Plots (Version 1.4)
2012
seqhandbook : Miscellaneous Tools for Sequence Analysis (Version 0.1.1)
2020
sfcr : Simulate Stock-Flow Consistent Models (Version 0.2.1)
2021
sharpshootR : A Soil Survey Toolkit (Version 2.3)
2014
shiny.fluent : Microsoft Fluent UI for Shiny Apps (Version 0.3.0)
2023
shiny.telemetry : 'Shiny' App Usage Telemetry (Version 0.2.0)
2023
shinyExprPortal : A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data (Version 1.1.0)
2023
shinyMolBio : Molecular Biology Visualization Tools for 'Shiny' Apps (Version 0.2)
2019
sigminer : Extract, Analyze and Visualize Mutational Signatures for Genomic Variations (Version 2.3.0)
2019
simaerep : Find Clinical Trial Sites Under-Reporting Adverse Events (Version 0.5.0)
2023
simfam : Simulate and Model Family Pedigrees with Structured Founders (Version 1.1.6)
2021
sinaplot : An Enhanced Chart for Simple and Truthful Representation of Single Observations over Multiple Classes (Version 1.1.0)
2015
sits : Satellite Image Time Series Analysis for Earth Observation Data Cubes (Version 1.4.2-1)
2022
skyscapeR : Data Analysis and Visualization for Skyscape Archaeology (Version 1.0.0)
2017
smoof : Single and Multi-Objective Optimization Test Functions (Version 1.6.0.3)
2015
smurf : Sparse Multi-Type Regularized Feature Modeling (Version 1.1.5)
2018
soc.ca : Specific Correspondence Analysis for the Social Sciences (Version 0.8.0)
2014
solaR : Radiation and Photovoltaic Systems (Version 0.46)
2010
sorvi : Functions for Finnish Open Data (Version 0.8.21)
2013
sp : Classes and Methods for Spatial Data (Version 2.1-3)
2005
spNetwork : Spatial Analysis on Network (Version 0.4.3.8)
2021
spacetime : Classes and Methods for Spatio-Temporal Data (Version 1.3-1)
2010
spatialTIME : Spatial Analysis of Vectra Immunoflourescent Data (Version 1.3.4-3)
2021
spatsurv : Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models (Version 2.0-1)
2014
spdep : Spatial Dependence: Weighting Schemes, Statistics (Version 1.3-3)
2002
spectacles : Storing, Manipulating and Analysis Spectroscopy and Associated Data (Version 0.5-4)
2017
spectralAnalysis : Pre-Process, Visualize and Analyse Spectral Data (Version 4.3.3)
2018
sperich : Auxiliary Functions to Estimate Centers of Biodiversity (Version 1.5-9)
2011
spind : Spatial Methods and Indices (Version 2.2.1)
2017
spmoran : Fast Spatial Regression using Moran Eigenvectors (Version 0.2.3)
2017
ssMutPA : Single-Sample Mutation-Based Pathway Analysis (Version 0.1.0)
2024
sta : Seasonal Trend Analysis for Time Series Imagery in R (Version 0.1.7)
2021
stacomiR : Fish Migration Monitoring (Version 0.6.1)
2018
starvz : R-Based Visualization Techniques for Task-Based Applications (Version 0.8.0)
2020
statVisual : Statistical Visualization Tools (Version 1.2.1)
2019
statebins : Create United States Uniform Cartogram Heatmaps (Version 1.4.0)
2014
statnetWeb : A Graphical User Interface for Network Modeling with 'Statnet' (Version 0.5.6)
2015
stfit : Spatio-Temporal Functional Imputation Tool (Version 0.99.9)
2020
stockR : Identifying Stocks in Genetic Data (Version 1.0.76)
2018
stocks : Stock Market Analysis (Version 1.1.4)
2015
streamDAG : Analytical Methods for Stream DAGs (Version 1.5)
2023
stxplore : Exploration of Spatio-Temporal Data (Version 0.1.0)
2023
superheat : A Graphical Tool for Exploring Complex Datasets Using Heatmaps (Version 0.1.0)
2017
survSNP : Power Calculations for SNP Studies with Censored Outcomes (Version 0.26)
2012
symphony : Efficient and Precise Single-Cell Reference Atlas Mapping (Version 0.1.1)
2021
tRigon : Toolbox for Integrative Pathomics Analysis (Version 0.3.2)
2023
tableHTML : A Tool to Create HTML Tables (Version 2.1.2)
2016
tactile : New and Extended Plots, Methods, and Panel Functions for 'lattice' (Version 0.2.1)
2017
tagcloud : Tag Clouds (Version 0.6)
2013
tashu : Analysis and Prediction of Bicycle Rental Amount (Version 0.1.1)
2019
tastypie : Easy Pie Charts (Version 0.1.1)
2021
tcpl : ToxCast Data Analysis Pipeline (Version 3.1.0)
2018
tcplfit2 : Concentration-Response Modeling of HTS or Transcriptomics Data (Version 0.1.6)
2021
tdr : Target Diagram (Version 0.13)
2015
tectonicr : Analyzing the Orientation of Maximum Horizontal Stress (Version 0.2.95)
2023
tensorEVD : A Fast Algorithm to Factorize High-Dimensional Tensor Product Matrices (Version 0.1.1)
2023
tidyHeatmap : A Tidy Implementation of Heatmap (Version 1.8.1)
2020
tidybayes : Tidy Data and 'Geoms' for Bayesian Models (Version 3.0.6)
2018
tidyheatmaps : Heatmaps from Tidy Data (Version 0.2.1)
2024
tidyjson : Tidy Complex 'JSON' (Version 0.3.2)
2015
tmap : Thematic Maps (Version 3.3-4)
2014
tmaptools : Thematic Map Tools (Version 3.1-1)
2017
tmod : Feature Set Enrichment Analysis for Metabolomics and Transcriptomics (Version 0.50.13)
2015
tongfen : Make Data Based on Different Geographies Comparable (Version 0.3.5)
2021
topoDistance : Calculating Topographic Paths and Distances (Version 1.0.2)
2019
tosca : Tools for Statistical Content Analysis (Version 0.3-2)
2018
toxEval : Exploring Biological Relevance of Environmental Chemistry Observations (Version 1.3.2)
2019
treemap : Treemap Visualization (Version 2.4-4)
2010
treespace : Statistical Exploration of Landscapes of Phylogenetic Trees (Version 1.1.4.3)
2017
tsutils : Time Series Exploration, Modelling and Forecasting (Version 0.9.4)
2019
ursa : Non-Interactive Spatial Tools for Raster Processing and Visualization (Version 3.10.4)
2018
vfinputs : Visual Filter Inputs for Shiny (Version 0.1.0)
2020
vici : Vaccine Induced Cellular Immunogenicity with Bivariate Modeling (Version 0.7.3)
2019
viking : State-Space Models Inference by Kalman or Viking (Version 1.0.2)
2022
vioplot : Violin Plot (Version 0.4.0)
2004
visa : Vegetation Imaging Spectroscopy Analyzer (Version 0.1.0)
2021
vistime : Pretty Timelines in R (Version 1.2.4)
2017
visxhclust : A Shiny App for Visual Exploration of Hierarchical Clustering (Version 1.1.0)
2021
vivid : Variable Importance and Variable Interaction Displays (Version 0.2.8)
2021
vvshiny : Create Complex Shiny Apps More Easily (Version 0.1.1)
2023
waffle : Create Waffle Chart Visualizations (Version 1.0.2)
2015
wallace : A Modular Platform for Reproducible Modeling of Species Niches and Distributions (Version 2.1.2)
2017
wavemulcor : Wavelet Routines for Global and Local Multiple Regression and Correlation (Version 3.1.2)
2012
wheatmap : Incrementally Build Complex Plots using Natural Semantics (Version 0.2.0)
2018
whomds : Calculate Results from WHO Model Disability Survey Data (Version 1.1.1)
2021
wilson : Web-Based Interactive Omics Visualization (Version 2.4.2)
2018
wordcloud : Word Clouds (Version 2.6)
2011
wrGraph : Graphics in the Context of Analyzing High-Throughput Data (Version 1.3.7)
2020
wrProteo : Proteomics Data Analysis Functions (Version 1.11.0.1)
2020
wrTopDownFrag : Internal Fragment Identification from Top-Down Mass Spectrometry (Version 1.0.2)
2020
wrMisc : Analyze Experimental High-Throughput (Omics) Data (Version 1.14.2)
2019
zonebuilder : Create and Explore Geographic Zoning Systems (Version 0.0.2)
2021
ztable : Zebra-Striped Tables in LaTeX and HTML Formats (Version 0.2.3)
2014
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RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
