Referenced by ⇅
Year
agroclim : Climatic Indices for Agriculture (Version 0.3.0)
2020
PALMO : Identify Intra and Inter-Donor Variations in Bulk or Single Cell
Longitudinal Dataset (Version 0.1.2)
2022
sandwichr : Spatial Interpolation Based on Spatial Stratified Heterogeneity (Version 1.0.4)
2022
SiteAdapt : Site Adaptation of Solar Irradiance Modeled Series (Version 1.1.0)
2020
mcmcabn : Flexible Implementation of a Structural MCMC Sampler for DAGs (Version 0.6)
2019
DBERlibR : Automated Assessment Data Analysis for Discipline-Based
Education Research (Version 0.1.3)
2022
PDXpower : Time to Event Outcome in Experimental Designs of Pre-Clinical
Studies (Version 1.0.0)
2024
viruslearner : Ensemble Learning for HIV-Related Metrics (Version 0.0.2)
2024
expertsurv : Incorporate Expert Opinion with Parametric Survival Models (Version 1.3.0)
2023
gfoRmula : Parametric G-Formula (Version 1.0.4)
2019
ggESDA : Exploratory Symbolic Data Analysis with 'ggplot2' (Version 0.2.0)
2022
ggScatRidges : Scatter Plot Combined with Ridgelines in 'ggplot2' (Version 0.1.1)
2023
ggheatmap : Plot Heatmap (Version 2.2)
2021
ggquickeda : Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary Tables (Version 0.3.1)
2018
mlexperiments : Machine Learning Experiments (Version 0.0.3)
2023
mlr : Machine Learning in R (Version 2.19.1)
2013
APCI : A New Age-Period-Cohort Model for Describing and Investigating Inter-Cohort Differences and Life Course Dynamics (Version 1.0.7)
2021
APCtools : Routines for Descriptive and Model-Based APC Analysis (Version 1.0.4)
2022
AnanseSeurat : Construct ANANSE GRN-Analysis Seurat (Version 1.2.0)
2023
AnnoProbe : Annotate the Gene Symbols for Probes in Expression Array (Version 0.1.7)
2021
BNPmix : Bayesian Nonparametric Mixture Models (Version 1.0.2)
2019
BOSO : Bilevel Optimization Selector Operator (Version 1.0.4)
2021
BREADR : Estimates Degrees of Relatedness (Up to the Second Degree) for Extreme Low-Coverage Data (Version 1.0.1)
2023
BayesMultiMode : Bayesian Mode Inference (Version 0.7.1)
2022
BayesianPlatformDesignTimeTrend : Simulate and Analyse Bayesian Platform Trial with Time Trend (Version 1.2.3)
2023
BinMat : Processes Binary Data Obtained from Fragment Analysis (Such as AFLPs, ISSRs, and RFLPs) (Version 0.1.5)
2020
CRMetrics : Cell Ranger Output Filtering and Metrics Visualization (Version 0.3.0)
2022
ClusROC : ROC Analysis in Three-Class Classification Problems for Clustered Data (Version 1.0.2)
2022
CohortCharacteristics : Summarise and Visualise Characteristics of Patients in the OMOP CDM (Version 0.1.0)
2024
CompAREdesign : Statistical Functions for the Design of Studies with Composite Endpoints (Version 2.3.1)
2020
CovidMutations : Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019) (Version 0.1.3)
2020
Coxmos : Cox MultiBlock Survival (Version 1.0.2)
2024
DEGRE : Inferring Differentially Expressed Genes using Generalized Linear Mixed Models (Version 0.2.0)
2022
EEAaq : Handle Air Quality Data from the European Environment Agency Data Portal (Version 0.0.3)
2023
EGAnet : Exploratory Graph Analysis – a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics (Version 2.0.5)
2019
ENMTools : Analysis of Niche Evolution using Niche and Distribution Models (Version 1.1.2)
2020
EpiInvert : Variational Techniques in Epidemiology (Version 0.3.1)
2022
FRK : Fixed Rank Kriging (Version 2.2.3)
2017
FuncNN : Functional Neural Networks (Version 1.0)
2020
GABB : Facilitation of Data Preparation and Plotting Procedures for RDA and PCA Analyses (Version 0.3.8)
2023
GNAR : Methods for Fitting Network Time Series Models (Version 1.1.3)
2018
GUniFrac : Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis (Version 1.8)
2012
GimmeMyPlot : Graphical Utilities for Visualizing and Exploring Data (Version 0.1.0)
2023
HS : Homogenous Segmentation for Spatial Lines Data (Version 1.1)
2019
HYPEtools : Tools for Processing and Analyzing Files from the Hydrological Catchment Model HYPE (Version 1.6.1)
2022
HanStat : Package for Easy Interpretation of Statistical Methods (Version 0.90.0)
2023
IDEATools : Individual and Group Farm Sustainability Assessments using the IDEA4 Method (Version 3.5.2)
2023
IRon : Solving Imbalanced Regression Tasks (Version 0.1.4)
2022
ImFoR : Non-Linear Height Diameter Models for Forestry (Version 0.1.0)
2023
JWileymisc : Miscellaneous Utilities and Functions (Version 1.4.1)
2016
JointAI : Joint Analysis and Imputation of Incomplete Data (Version 1.0.6)
2018
LMMstar : Repeated Measurement Models for Discrete Times (Version 1.0.1)
2021
MERO : Performing Monte Carlo Expectation Maximization Random Forest Imputation for Biological Data (Version 0.1.2)
2022
MF.beta4 : Measuring Ecosystem Multi-Functionality and Its Decomposition (Version 1.0.3)
2023
MSPRT : A Modified Sequential Probability Ratio Test (MSPRT) (Version 3.0)
2018
MSigSeg : Multiple SIGnal SEGmentation (Version 0.2.0)
2023
MetaIntegrator : Meta-Analysis of Gene Expression Data (Version 2.1.3)
2016
MetaNet : Network Analysis for Omics Data (Version 0.1.2)
2024
NMRphasing : Phase Error Correction and Baseline Correction for One Dimensional ('1D') 'NMR' Data (Version 1.0.4)
2023
OSLdecomposition : Signal Component Analysis for Optically Stimulated Luminescence (Version 1.0.0)
2022
OenoKPM : Modeling the Kinetics of Carbon Dioxide Production in Alcoholic Fermentation (Version 2.4.1)
2021
OlinkAnalyze : Facilitate Analysis of Proteomic Data from Olink (Version 3.7.0)
2022
PRECAST : Embedding and Clustering with Alignment for Spatial Datasets (Version 1.6.5)
2022
PUMP : Power Under Multiplicity Project (Version 1.0.3)
2022
ParBayesianOptimization : Parallel Bayesian Optimization of Hyperparameters (Version 1.2.6)
2018
PatientProfiles : Identify Characteristics of Patients in the OMOP Common Data Model (Version 0.8.0)
2023
PerformanceAnalytics : Econometric Tools for Performance and Risk Analysis (Version 2.0.4)
2007
QuadratiK : Collection of Methods Constructed using Kernel-Based Quadratic Distances (Version 1.0.0)
2024
QurvE : Robust and User-Friendly Analysis of Growth and Fluorescence Curves (Version 1.1.1)
2023
RCTrep : Validation of Estimates of Treatment Effects in Observational Data (Version 1.2.0)
2023
RVA : RNAseq Visualization Automation (Version 0.0.5)
2020
RecordTest : Inference Tools in Time Series Based on Record Statistics (Version 2.2.0)
2019
SCOUTer : Simulate Controlled Outliers (Version 1.0.0)
2020
SEIRfansy : Extended Susceptible-Exposed-Infected-Recovery Model (Version 1.1.1)
2020
SHAPforxgboost : SHAP Plots for 'XGBoost' (Version 0.1.3)
2019
SIPmg : Statistical Analysis to Identify Isotope Incorporating MAGs (Version 1.4.1)
2023
SKFCPD : Fast Online Changepoint Detection for Temporally Correlated Data (Version 0.2.4)
2024
SRTsim : Simulator for Spatially Resolved Transcriptomics (Version 0.99.6)
2022
SWIM : Scenario Weights for Importance Measurement (Version 1.0.0)
2019
ShellChron : Builds Chronologies from Oxygen Isotope Profiles in Shells (Version 0.4.0)
2020
SouthParkRshiny : Data and 'Shiny' Application for the Show 'SouthPark' (Version 1.0.0)
2024
SpatialDDLS : Deconvolution of Spatial Transcriptomics Data Based on Neural Networks (Version 1.0.2)
2023
SqueakR : An Experiment Interface for 'DeepSqueak' Bioacoustics Research (Version 1.3.0)
2022
SurvMetrics : Predictive Evaluation Metrics in Survival Analysis (Version 0.5.0)
2021
TCIU : Spacekime Analytics, Time Complexity and Inferential Uncertainty (Version 1.2.5)
2020
TOmicsVis : Transcriptome Visualization Process Scheme (Version 2.0.0)
2023
TestGardener : Information Analysis for Test and Rating Scale Data (Version 3.3.3)
2021
TextMiningGUI : Text Mining GUI Interface (Version 0.3)
2020
UCSCXenaShiny : Interactive Analysis of UCSC Xena Data (Version 2.0.0)
2019
UNCOVER : Utilising Normalisation Constant Optimisation via Edge Removal (UNCOVER) (Version 1.1.0)
2023
UniprotR : Retrieving Information of Proteins from Uniprot (Version 2.4.0)
2019
VALERIE : Visualising Splicing at Single-Cell Resolution (Version 1.1.0)
2020
WINS : The R WINS Package (Version 1.4.1)
2021
adestr : Estimation in Optimal Adaptive Two-Stage Designs (Version 0.5.0)
2023
afex : Analysis of Factorial Experiments (Version 1.3-1)
2012
agriutilities : Utilities for Data Analysis in Agriculture (Version 1.2.0)
2023
ale : Interpretable Machine Learning and Statistical Inference with Accumulated Local Effects (ALE) (Version 0.3.0)
2023
ammiBayes : Bayesian Ammi Model for Continuous Data (Version 1.0-2)
2022
asmbPLS : Predicting and Classifying Patient Phenotypes with Multi-Omics Data (Version 1.0.0)
2023
bSi : Modeling and Computing Biogenic Silica ('bSi') from Inland and Pelagic Sediments (Version 1.0.0)
2024
baker : "Nested Partially Latent Class Models" (Version 1.0.3)
2022
bayMDS : Bayesian Multidimensional Scaling and Choice of Dimension (Version 2.0)
2021
bdl : Interface and Tools for 'BDL' API (Version 1.0.5)
2019
biomod2 : Ensemble Platform for Species Distribution Modeling (Version 4.2-4)
2012
bmstdr : Bayesian Modeling of Spatio-Temporal Data with R (Version 0.7.9)
2022
calibmsm : Calibration Plots for the Transition Probabilities from Multistate Models (Version 1.0.0)
2023
ciftiTools : Tools for Reading, Writing, Viewing and Manipulating CIFTI Files (Version 0.14.0)
2020
clustEff : Clusters of Effects Curves in Quantile Regression Models (Version 0.3.1)
2017
clustNet : Network-Based Clustering (Version 1.2.0)
2023
cmpsR : R Implementation of Congruent Matching Profile Segments Method (Version 0.1.2)
2021
coda4microbiome : Compositional Data Analysis for Microbiome Studies (Version 0.2.3)
2022
comparer : Compare Output and Run Time (Version 0.2.3)
2017
conformalInference.fd : Tools for Conformal Inference for Regression in Multivariate Functional Setting (Version 1.1.1)
2022
convergEU : Monitoring Convergence of EU Countries (Version 0.7.3.2)
2020
cophescan : Adaptation of the Coloc Method for PheWAS (Version 1.4.0)
2023
corx : Create and Format Correlation Matrices (Version 1.0.7.2)
2019
cpr : Control Polygon Reduction (Version 0.4.0)
2017
crctStepdown : Univariate Analysis of Cluster Trials with Multiple Outcomes (Version 0.5.2)
2021
csa : A Cross-Scale Analysis Tool for Model-Observation Visualization and Integration (Version 0.7.1)
2020
csmpv : Biomarker Confirmation, Selection, Modelling, Prediction, and Validation (Version 1.0.3)
2024
cvCovEst : Cross-Validated Covariance Matrix Estimation (Version 1.2.2)
2021
dPCP : Automated Analysis of Multiplex Digital PCR Data (Version 2.0.1)
2020
dae : Functions Useful in the Design and ANOVA of Experiments (Version 3.2.25)
2010
ddtlcm : Latent Class Analysis with Dirichlet Diffusion Tree Process Prior (Version 0.2.1)
2023
dfoliatR : Detection and Analysis of Insect Defoliation Signals in Tree Rings (Version 0.3.0)
2020
did : Treatment Effects with Multiple Periods and Groups (Version 2.1.2)
2018
digitalDLSorteR : Deconvolution of Bulk RNA-Seq Data Based on Deep Learning (Version 1.0.1)
2021
discourseGT : Analyze Group Patterns using Graph Theory in Educational Settings (Version 1.2.0)
2020
diversityForest : Innovative Complex Split Procedures in Random Forests Through Candidate Split Sampling (Version 0.4.0)
2020
dsem : Fit Dynamic Structural Equation Models (Version 1.2.1)
2023
dtComb : Statistical Combination of Diagnostic Tests (Version 1.0.2)
2023
ecocbo : Calculating Optimum Sampling Effort in Community Ecology (Version 0.10.2)
2023
ecpc : Flexible Co-Data Learning for High-Dimensional Prediction (Version 3.1.1)
2021
entropart : Entropy Partitioning to Measure Diversity (Version 1.6-13)
2013
esmtools : Preprocessing Experience Sampling Method (ESM) Data (Version 1.0.1)
2024
evapoRe : Evapotranspiration R Recipes (Version 1.0.0)
2023
explainer : Machine Learning Model Explainer (Version 1.0.0)
2023
factoextra : Extract and Visualize the Results of Multivariate Data Analyses (Version 1.0.7)
2016
fastai : Interface to 'fastai' (Version 2.2.2)
2020
finnsurveytext : Analyse Open-Ended Survey Responses in Finnish (Version 1.0.0)
2024
formods : 'Shiny' Modules for General Tasks (Version 0.1.4)
2023
geneHapR : Gene Haplotype Statistics, Phenotype Association and Visualization (Version 1.2.4)
2022
geocausal : Causal Inference with Spatio-Temporal Data (Version 0.3.0)
2023
geocmeans : Implementing Methods for Spatial Fuzzy Unsupervised Classification (Version 0.3.4)
2021
glmmSeq : General Linear Mixed Models for Gene-Level Differential Expression (Version 0.5.5)
2021
grapesAgri1 : Collection of Shiny Apps for Agricultural Research Data Analysis (Version 1.1.0)
2021
hJAM : Hierarchical Joint Analysis of Marginal Summary Statistics (Version 1.0.0)
2020
hdpGLM : Hierarchical Dirichlet Process Generalized Linear Models (Version 1.0.3)
2020
heatwaveR : Detect Heatwaves and Cold-Spells (Version 0.4.6)
2018
heiscore : Score and Plot the Healthy Eating Index from NHANES Data (Version 0.0.1)
2024
hilldiv : Integral Analysis of Diversity Based on Hill Numbers (Version 1.5.1)
2019
iBART : Iterative Bayesian Additive Regression Trees Descriptor Selection Method (Version 1.0.0)
2023
iCellR : Analyzing High-Throughput Single Cell Sequencing Data (Version 1.6.7)
2019
iNEXT.4steps : Four-Step Biodiversity Analysis Based on 'iNEXT' (Version 1.0.0)
2024
idiogramFISH : Shiny App. Idiograms with Marks and Karyotype Indices (Version 2.0.13)
2019
iemisc : Irucka Embry's Miscellaneous Functions (Version 1.0.4)
2016
iglu : Interpreting Glucose Data from Continuous Glucose Monitors (Version 4.0.0)
2020
immunarch : Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires (Version 0.9.1)
2020
insane : INsulin Secretion ANalysEr (Version 1.0.3)
2020
jskm : Kaplan-Meier Plot with 'ggplot2' (Version 0.5.3)
2019
jsmodule : 'RStudio' Addins and 'Shiny' Modules for Medical Research (Version 1.5.3)
2019
longreadvqs : Viral Quasispecies Comparison from Long-Read Sequencing Data (Version 0.1.2)
2024
lpirfs : Local Projections Impulse Response Functions (Version 0.2.3)
2018
mappoly : Genetic Linkage Maps in Autopolyploids (Version 0.4.1)
2020
mc2d : Tools for Two-Dimensional Monte-Carlo Simulations (Version 0.2.0)
2009
meconetcomp : Compare Microbial Networks of 'trans_network' Class of 'microeco' Package (Version 0.5.0)
2022
mecoturn : Decipher Microbial Turnover along a Gradient (Version 0.3.0)
2023
metaviz : Forest Plots, Funnel Plots, and Visual Funnel Plot Inference for Meta-Analysis (Version 0.3.1)
2017
miceRanger : Multiple Imputation by Chained Equations with Random Forests (Version 1.5.0)
2020
microbial : Do 16s Data Analysis and Generate Figures (Version 0.0.20)
2020
microeco : Microbial Community Ecology Data Analysis (Version 1.6.0)
2020
missingHE : Missing Outcome Data in Health Economic Evaluation (Version 1.5.0)
2019
mmb : Arbitrary Dependency Mixed Multivariate Bayesian Models (Version 0.13.3)
2020
multid : Multivariate Difference Between Two Groups (Version 1.0.0)
2021
mxfda : A Functional Data Analysis Package for Spatial Single Cell Data (Version 0.2.1)
2024
neatStats : Neat and Painless Statistical Reporting (Version 1.13.3)
2020
neonPlantEcology : Process NEON Plant Data for Ecological Analysis (Version 1.5.0)
2024
nestedcv : Nested Cross-Validation with 'glmnet' and 'caret' (Version 0.7.8)
2022
nlmixr2rpt : Templated Word and PowerPoint Reporting of 'nlmixr2' Fitting Results (Version 0.2.0)
2022
nuts : Convert European Regional Data (Version 1.0.0)
2024
ofpetrial : Design on-Farm Precision Field Agronomic Trials (Version 0.1.0)
2024
onemap : Construction of Genetic Maps in Experimental Crosses (Version 3.0.0)
2008
pRecipe : Precipitation R Recipes (Version 3.0.1-3)
2021
packDAMipd : Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data (Version 1.1.0)
2020
pafr : Read, Manipulate and Visualize 'Pairwise mApping Format' Data (Version 0.0.2)
2020
pbcc : Percentile-Based Control Chart (Version 0.0.4)
2022
pctax : Professional Comprehensive Omics Data Analysis (Version 0.1.1)
2024
pcutils : Some Useful Functions for Statistics and Visualization (Version 0.2.5)
2023
pedbp : Pediatric Blood Pressure (Version 1.0.2)
2022
popstudy : Applied Techniques to Demographic and Time Series Analysis (Version 1.0.1)
2022
powdR : Full Pattern Summation of X-Ray Powder Diffraction Data (Version 1.3.0)
2018
predRupdate : Prediction Model Validation and Updating (Version 0.1.1)
2023
promotionImpact : Analysis & Measurement of Promotion Effectiveness (Version 0.1.5)
2019
qPCRhelper : qPCR Ct Values to Expression Values (Version 0.1.0)
2023
r4ss : R Code for Stock Synthesis (Version 1.44.0)
2009
rBiasCorrection : Correct Bias in DNA Methylation Analyses (Version 0.3.4)
2020
rKOMICS : Minicircle Sequence Classes (MSC) Analyses (Version 1.3)
2021
rPACI : Placido Analysis of Corneal Irregularity (Version 0.2.2)
2019
rSAFE : Surrogate-Assisted Feature Extraction (Version 0.1.4)
2021
rTwig : Realistic Quantitative Structure Models (Version 1.0.2)
2024
reappraised : Statistical Tools for Assessing Publication Integrity of Groups of Trials (Version 0.1.1)
2023
remiod : Reference-Based Multiple Imputation for Ordinal/Binary Response (Version 1.0.2)
2022
rempsyc : Convenience Functions for Psychology (Version 0.1.7)
2022
reportRmd : Tidy Presentation of Clinical Reporting (Version 0.1.0)
2022
reservoirnet : Reservoir Computing and Echo State Networks (Version 0.2.0)
2023
rfVarImpOOB : Unbiased Variable Importance for Random Forests (Version 1.0.3)
2020
riskCommunicator : G-Computation to Estimate Interpretable Epidemiological Effects (Version 1.0.1)
2020
rnmamod : Bayesian Network Meta-Analysis with Missing Participants (Version 0.4.0)
2021
rrtable : Reproducible Research with a Table of R Codes (Version 0.3.0)
2018
rstatix : Pipe-Friendly Framework for Basic Statistical Tests (Version 0.7.2)
2019
scCustomize : Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing (Version 2.1.2)
2022
scITD : Single-Cell Interpretable Tensor Decomposition (Version 1.0.4)
2021
scSpatialSIM : A Point Pattern Simulator for Spatial Cellular Data (Version 0.1.3.3)
2023
sievePH : Sieve Analysis Methods for Proportional Hazards Models (Version 1.0.4)
2019
sigminer : Extract, Analyze and Visualize Mutational Signatures for Genomic Variations (Version 2.3.0)
2019
simET : Tools for Simulation of Evapotranspiration of Field Crops and Soil Water Balance (Version 1.0.3)
2022
smplot2 : Creating and Annotating a Composite Plot in 'ggplot2' (Version 0.2.1)
2024
surtvep : Cox Non-Proportional Hazards Model with Time-Varying Coefficients (Version 1.0.0)
2023
survminer : Drawing Survival Curves using 'ggplot2' (Version 0.4.9)
2016
symptomcheckR : Analyzing and Visualizing Symptom Checker Performance (Version 0.1.3)
2024
tRigon : Toolbox for Integrative Pathomics Analysis (Version 0.3.2)
2023
tcgaViz : Visualization Tool for the Cancer Genome Atlas Program (TCGA) (Version 1.0.2)
2022
tipsae : Tools for Handling Indices and Proportions in Small Area Estimation (Version 1.0.1)
2022
trawl : Estimation and Simulation of Trawl Processes (Version 0.2.2)
2018
treesliceR : To Slice Phylogenetic Trees and Infer Evolutionary Patterns Over Time (Version 1.0.1)
2023
vDiveR : Visualization of Viral Protein Sequence Diversity Dynamics (Version 1.2.1)
2023
vaccine : Statistical Tools for Immune Correlates Analysis of Vaccine Clinical Trial Data (Version 1.2.1)
2023
vannstats : Simplified Statistics for PA 606 (Version 1.3.4.14)
2021
vici : Vaccine Induced Cellular Immunogenicity with Bivariate Modeling (Version 0.7.3)
2019
viewpoly : A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species (Version 0.4.1)
2021
visR : Clinical Graphs and Tables Adhering to Graphical Principles (Version 0.4.1)
2021
vmeasur : Quantify the Contractile Nature of Vessels Monitored under an Operating Microscope (Version 0.1.4)
2021
voiceR : Voice Analytics for Social Scientists (Version 0.1.0)
2023
volcano3D : 3D Volcano Plots and Polar Plots for Three-Class Data (Version 2.0.9)
2020
vsd : Graphical Shim for Visual Survival Data Analysis (Version 0.1.0)
2021
vvshiny : Create Complex Shiny Apps More Easily (Version 0.1.1)
2023
wxgenR : A Stochastic Weather Generator with Seasonality (Version 1.3.6)
2023
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RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
