qtl: Tools for Analyzing QTL Experiments

Canonical link: https://scholar.rpkg.net/pkg/qtl

Karl W Broman and Hao Wu, with • ideas from Gary Churchill and Saunak Sen and contributions from • Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr • Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron • Wolen, Brian Yandell, and R Core Team • View description and downloads View dependencies GitHub project

2001 Published

1.66 Version

0 Citations

5 Authors

Referenced by ⇅	Year
GenomicMating: Efficient Breeding by Genomic Mating (Version 2.0)	2017
MPR.genotyping: Maximum Parsimony of Recombination to Infer Parental Genotypes (Version 0.8)	2018
ASMap: Linkage Map Construction using the MSTmap Algorithm (Version 1.0-7)	2014
BayesNetBP: Bayesian Network Belief Propagation (Version 1.6.1)	2017
LinkageMapView: Plot Linkage Group Maps with Quantitative Trait Loci (Version 2.1.2)	2017
MDSMap: High Density Genetic Linkage Mapping using Multidimensional Scaling (Version 1.1)	2017
PopVar: Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation (Version 1.3.1)	2015
QTL.gCIMapping.GUI: QTL Genome-Wide Composite Interval Mapping with Graphical User Interface (Version 2.1.1)	2018
QTL.gCIMapping: QTL Genome-Wide Composite Interval Mapping (Version 3.4)	2018
QTLRel: Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees (Version 1.14)	2010
agridat: Agricultural Datasets (Version 1.23)	2011
cape: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice (Version 3.1.2)	2013
ctl: Correlated Trait Locus Mapping (Version 1.0.0-10)	2016
dQTG.seq: A BSA Software for Detecting All Types of QTLs in BC, DH, RIL and F2 (Version 1.0.2)	2022
fssemR: Fused Sparse Structural Equation Models to Jointly Infer Gene Regulatory Network (Version 0.1.8)	2019
lineup: Lining Up Two Sets of Measurements (Version 0.42)	2012
mppR: Multi-Parent Population QTL Analysis (Version 1.5.0)	2018
netgwas: Network-Based Genome Wide Association Studies (Version 1.14.3)	2017
qtl2convert: Convert Data among QTL Mapping Packages (Version 0.30)	2020
qtl2: Quantitative Trait Locus Mapping in Experimental Crosses (Version 0.34)	2020
qtlDesign: Design of QTL (Quantitative Trait Locus) Experiments (Version 0.953)	2005
qtlbook: Datasets for the R/qtl Book (Version 0.18-8)	2009
qtlcharts: Interactive Graphics for QTL Experiments (Version 0.16)	2015
qtlhot: Inference for QTL Hotspots (Version 1.0.4)	2012
qtlnet: Causal Inference of QTL Networks (Version 1.5.4)	2012
rNeighborQTL: Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects (Version 1.1.2)	2020
simcross: Simulate Experimental Crosses (Version 0.6)	2020
statgenSTA: Single Trial Analysis (STA) of Field Trials (Version 1.0.12)	2020
varbvs: Large-Scale Bayesian Variable Selection Using Variational Methods (Version 2.6-10)	2012
wgaim: Whole Genome Average Interval Mapping for QTL Detection and Estimation using ASReml-R (Version 2.0-1)	2008
xoi: Tools for Analyzing Crossover Interference (Version 0.72)	2012

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