Referenced by ⇅
Year
apTreeshape : Analyses of Phylogenetic Treeshape (Version 1.5-0.1)
2005
BBcor : Bayesian Bootstrapping Correlations (Version 1.0.3)
2020
ccdf : Distribution-Free Single-Cell Differential Expression Analysis (Version 1.1.4)
2021
CENFA : Climate and Ecological Niche Factor Analysis (Version 1.1.1)
2018
hyperbrick : Accessory Tools for Preprocessing Hyper-Spectral Images (Version 1.0)
2022
kernelPhil : Kernel Smoothing Tools for Philology and Historical Dialectology (Version 0.1)
2021
moveVis : Movement Data Visualization (Version 0.10.5)
2017
optinterv : Optimal Intervention (Version 0.1.0)
2020
PALMO : Identify Intra and Inter-Donor Variations in Bulk or Single Cell
Longitudinal Dataset (Version 0.1.2)
2022
PCRedux : Quantitative Polymerase Chain Reaction (qPCR) Data Mining and
Machine Learning Toolkit (Version 1.1-2)
2017
Qardl : Quantile Autoregressive Distributed Lag Model (Version 0.1.1)
2022
replicationInterval : Replication Interval Functions (Version 2.0.1)
2014
RFmerge : Merging of Satellite Datasets with Ground Observations using
Random Forests (Version 0.1-10)
2020
rtsVis : Raster Time Series Visualization (Version 0.0.3)
2021
sequenza : Copy Number Estimation from Tumor Genome Sequencing Data (Version 3.0.0)
2013
Taxonstand : Taxonomic Standardization of Plant Species Names (Version 2.4)
2012
mldr.resampling : Resampling Algorithms for Multi-Label Datasets (Version 0.2.3)
2023
A3 : Accurate, Adaptable, and Accessible Error Metrics for Predictive Models (Version 1.0.0)
2013
AmpGram : Prediction of Antimicrobial Peptides (Version 1.0)
2020
BEKKs : Multivariate Conditional Volatility Modelling and Forecasting (Version 1.4.4)
2022
BRISC : Fast Inference for Large Spatial Datasets using BRISC (Version 1.0.5)
2018
BSPADATA : Bayesian Proposal to Fit Spatial Econometric Models (Version 1.1.0)
2018
BayesDLMfMRI : Statistical Analysis for Task-Based Fmri Data (Version 0.0.3)
2023
BayesFactor : Computation of Bayes Factors for Common Designs (Version 0.9.12-4.7)
2012
BetaPASS : Calculate Power and Sample Size with Beta Regression (Version 1.1-2)
2019
BuyseTest : Generalized Pairwise Comparisons (Version 3.0.2)
2016
CACIMAR : Cross-Species Analysis of Cell Identities, Markers and Regulations (Version 1.0.0)
2022
CancerGram : Prediction of Anticancer Peptides (Version 1.0.0)
2020
CliquePercolation : Clique Percolation for Networks (Version 0.4.0)
2019
CondCopulas : Estimation and Inference for Conditional Copula Models (Version 0.1.3)
2022
DBTC : Dada-BLAST-Taxon Assign-Condense Metabarcode Analysis (Version 0.1.0)
2024
DEET : Differential Expression Enrichment Tool (Version 1.0.11)
2022
DMCfun : Diffusion Model of Conflict (DMC) in Reaction Time Tasks (Version 3.5.4)
2020
DynForest : Random Forest with Multivariate Longitudinal Predictors (Version 1.1.3)
2022
EGAnet : Exploratory Graph Analysis – a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics (Version 2.0.5)
2019
Ecume : Equality of 2 (or k) Continuous Univariate and Multivariate Distributions (Version 0.9.1)
2021
ElliptCopulas : Inference of Elliptical Distributions and Copulas (Version 0.1.3)
2022
FSelectorRcpp : 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support (Version 0.3.11)
2017
FuncNN : Functional Neural Networks (Version 1.0)
2020
GCalignR : Simple Peak Alignment for Gas-Chromatography Data (Version 1.0.6)
2017
GGMncv : Gaussian Graphical Models with Nonconvex Regularization (Version 2.1.1)
2020
GenomeAdmixR : Simulate Admixture of Genomes (Version 2.1.7)
2021
HDSpatialScan : Multivariate and Functional Spatial Scan Statistics (Version 1.0.4)
2021
HYPEtools : Tools for Processing and Analyzing Files from the Hydrological Catchment Model HYPE (Version 1.6.1)
2022
HelpersMG : Tools for Environmental Analyses, Ecotoxicology and Various R Functions (Version 6.1)
2015
HeritSeq : Heritability of Gene Expression for Next-Generation Sequencing (Version 1.0.2)
2017
IDF : Estimation and Plotting of IDF Curves (Version 2.1.2)
2017
ILSE : Linear Regression Based on 'ILSE' for Missing Data (Version 1.1.7)
2022
Infusion : Inference Using Simulation (Version 2.1.0)
2016
LMMstar : Repeated Measurement Models for Discrete Times (Version 1.0.1)
2021
LexisNexisTools : Working with Files from 'LexisNexis' (Version 0.3.7)
2018
MACER : Molecular Acquisition, Cleaning, and Evaluation in R 'MACER' (Version 0.2.1)
2021
MMDCopula : Robust Estimation of Copulas by Maximum Mean Discrepancy (Version 0.2.1)
2020
MOCHA : Modeling for Single-Cell Open Chromatin Analysis (Version 1.1.0)
2022
MRFcov : Markov Random Fields with Additional Covariates (Version 1.0.39)
2018
MSEtool : Management Strategy Evaluation Toolkit (Version 3.7.1)
2018
MiscMetabar : Miscellaneous Functions for Metabarcoding Analysis (Version 0.7.10)
2024
MortalityGaps : The Double-Gap Life Expectancy Forecasting Model (Version 1.0.0)
2018
MortalityLaws : Parametric Mortality Models, Life Tables and HMD (Version 2.1.0)
2017
NetworkToolbox : Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis (Version 1.4.2)
2017
OSMscale : Add a Scale Bar to 'OpenStreetMap' Plots (Version 0.5.20)
2016
PAGFL : Joint Estimation and Identification of Latent Groups in Panel Data Models (Version 1.0.1)
2024
PRDA : Conduct a Prospective or Retrospective Design Analysis (Version 1.0.0)
2020
PRECAST : Embedding and Clustering with Alignment for Spatial Datasets (Version 1.6.5)
2022
ProFAST : Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction (Version 1.4)
2023
RGCCA : Regularized and Sparse Generalized Canonical Correlation Analysis for Multiblock Data (Version 3.0.3)
2012
RandomForestsGLS : Random Forests for Dependent Data (Version 0.1.4)
2021
ResourceSelection : Resource Selection (Probability) Functions for Use-Availability Data (Version 0.3-6)
2011
Rraven : Connecting R and 'Raven' Sound Analysis Software (Version 1.0.13)
2017
Rtrack : Spatial Navigation Strategy Analysis (Version 2.0.3)
2019
SAMtool : Stock Assessment Methods Toolkit (Version 1.6.4)
2021
SCORPION : Single Cell Oriented Reconstruction of PANDA Individual Optimized Networks (Version 1.0.1)
2022
SCORPIUS : Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data (Version 1.0.9)
2018
SEIRfansy : Extended Susceptible-Exposed-Infected-Recovery Model (Version 1.1.1)
2020
SEMgraph : Network Analysis and Causal Inference Through Structural Equation Modeling (Version 1.2.1)
2021
SamplingStrata : Optimal Stratification of Sampling Frames for Multipurpose Sampling Surveys (Version 1.5-4)
2011
SemNeT : Methods and Measures for Semantic Network Analysis (Version 1.4.4)
2019
Seurat : Tools for Single Cell Genomics (Version 5.0.3)
2017
Signac : Analysis of Single-Cell Chromatin Data (Version 1.13.0)
2020
SimDesign : Structure for Organizing Monte Carlo Simulation Designs (Version 2.15.1)
2015
SimEngine : A Modular Framework for Statistical Simulations in R (Version 1.4.0)
2021
SmCCNet : Sparse Multiple Canonical Correlation Network Analysis Tool (Version 2.0.3)
2019
SortedEffects : Estimation and Inference Methods for Sorted Causal Effects and Classification Analysis (Version 1.7.0)
2019
SpatialDDLS : Deconvolution of Spatial Transcriptomics Data Based on Neural Networks (Version 1.0.2)
2023
Surrogate : Evaluation of Surrogate Endpoints in Clinical Trials (Version 3.2.5)
2014
TCA : Tensor Composition Analysis (Version 1.2.1)
2019
TIGERr : Technical Variation Elimination with Ensemble Learning Architecture (Version 1.0.0)
2021
Unico : Unified Cross-Omics Deconvolution (Version 0.1.0)
2024
VSOLassoBag : Variable Selection Oriented LASSO Bagging Algorithm (Version 0.99.1)
2022
WikidataR : Read-Write API Client Library for Wikidata (Version 2.3.3)
2015
activity : Animal Activity Statistics (Version 1.3.4)
2014
animl : A Collection of ML Tools for Conservation Research (Version 1.1.0)
2022
antaresEditObject : Edit an 'Antares' Simulation (Version 0.6.1)
2018
antaresRead : Import, Manipulate and Explore the Results of an 'Antares' Simulation (Version 2.6.0)
2017
bSims : Bird Point Count Simulator (Version 0.3-0)
2019
basemaps : Accessing Spatial Basemaps in R (Version 0.0.7)
2021
bayesassurance : Bayesian Assurance Computation (Version 0.1.0)
2022
bbreg : Bessel and Beta Regressions via Expectation-Maximization Algorithm for Continuous Bounded Data (Version 2.0.2)
2020
berryFunctions : Function Collection Related to Plotting and Hydrology (Version 1.22.5)
2014
blackbox : Black Box Optimization and Exploration of Parameter Space (Version 1.1.46)
2016
bootnet : Bootstrap Methods for Various Network Estimation Routines (Version 1.6)
2015
caretEnsemble : Ensembles of Caret Models (Version 2.0.3)
2015
cfda : Categorical Functional Data Analysis (Version 0.11.0)
2021
clarify : Simulation-Based Inference for Regression Models (Version 0.2.0)
2023
cleangeo : Cleaning Geometries from Spatial Objects (Version 0.3-1)
2015
conformalInference.fd : Tools for Conformal Inference for Regression in Multivariate Functional Setting (Version 1.1.1)
2022
conformalInference.multi : Conformal Inference Tools for Regression with Multivariate Response (Version 1.1.1)
2022
copCAR : Fitting the copCAR Regression Model for Discrete Areal Data (Version 2.0-4)
2015
corpustools : Managing, Querying and Analyzing Tokenized Text (Version 0.5.1)
2017
corto : Inference of Gene Regulatory Networks (Version 1.2.4)
2019
crossurr : Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers (Version 1.0.6)
2022
curvir : Specify Reserve Demand Curves (Version 0.1.1)
2023
cwbtools : Tools to Create, Modify and Manage "CWB" Corpora (Version 0.4.1)
2019
ddecompose : Detailed Distributional Decomposition (Version 1.0.0)
2024
densitr : Analysing Density Profiles from Resistance Drilling of Trees (Version 0.2)
2020
detect : Analyzing Wildlife Data with Detection Error (Version 0.4-6)
2011
did : Treatment Effects with Multiple Periods and Groups (Version 2.1.2)
2018
digitalDLSorteR : Deconvolution of Bulk RNA-Seq Data Based on Deep Learning (Version 1.0.1)
2021
disto : Unified Interface to Distance, Dissimilarity, Similarity Matrices (Version 0.2.0)
2018
dsims : Distance Sampling Simulations (Version 1.0.4)
2021
dynaSpec : Dynamic Spectrogram Visualizations (Version 1.0.1)
2020
dyngen : A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses (Version 1.0.5)
2020
eRTG3D : Empirically Informed Random Trajectory Generation in 3-D (Version 0.7.0)
2019
easyVerification : Ensemble Forecast Verification for Large Data Sets (Version 0.4.5)
2015
embryogrowth : Tools to Analyze the Thermal Reaction Norm of Embryo Growth (Version 9.1)
2014
epiphy : Analysis of Plant Disease Epidemics (Version 0.5.0)
2018
epm : EcoPhyloMapper (Version 1.1.2)
2022
extremeStat : Extreme Value Statistics and Quantile Estimation (Version 1.5.9)
2016
eyetrackingR : Eye-Tracking Data Analysis (Version 0.2.1)
2015
faoutlier : Influential Case Detection Methods for Factor Analysis and Structural Equation Models (Version 0.7.6)
2012
fastTopics : Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data (Version 0.6-163)
2022
fitPS : Fit Zeta Distributions to Forensic Data (Version 1.0.1)
2022
flightsbr : Download Flight and Airport Data from Brazil (Version 0.4.0)
2022
flipr : Flexible Inference via Permutations in R (Version 0.3.3)
2021
fossilbrush : Automated Cleaning of Fossil Occurrence Data (Version 1.0.3)
2022
frequencyConnectedness : Spectral Decomposition of Connectedness Measures (Version 0.2.4)
2017
ftDK : A Wrapper for the API of the Danish Parliament (Version 1.0)
2017
funStatTest : Statistical Testing for Functional Data (Version 1.0.2)
2023
fwb : Fractional Weighted Bootstrap (Version 0.2.0)
2022
gcite : Google Citation Parser (Version 0.10.1)
2017
gdm : Generalized Dissimilarity Modeling (Version 1.5.0-9.1)
2015
gerbil : Generalized Efficient Regression-Based Imputation with Latent Processes (Version 0.1.9)
2021
glmmSeq : General Linear Mixed Models for Gene-Level Differential Expression (Version 0.5.5)
2021
gmvarkit : Estimate Gaussian and Student's t Mixture Vector Autoregressive Models (Version 2.1.2)
2018
gtfsrouter : Routing with 'GTFS' (General Transit Feed Specification) Data (Version 0.1.2)
2019
hero : Spatio-Temporal (Hero) Sandwich Smoother (Version 0.6)
2018
hydroloom : Utilities to Weave Hydrologic Fabrics (Version 1.0.2)
2023
hypervolume : High Dimensional Geometry, Set Operations, Projection, and Inference Using Kernel Density Estimation, Support Vector Machines, and Convex Hulls (Version 3.1.3)
2013
immcp : Poly-Pharmacology Toolkit for Traditional Chinese Medicine Research (Version 1.0.3)
2020
jrSiCKLSNMF : Multimodal Single-Cell Omics Dimensionality Reduction (Version 1.2.1)
2023
kgen : A Tool for Calculating Stoichiometric Equilibrium Constants (Ks) for Seawater (Version 0.3.1)
2023
krippendorffsalpha : Measuring Agreement Using Krippendorff's Alpha Coefficient (Version 2.0)
2020
lavaSearch2 : Tools for Model Specification in the Latent Variable Framework (Version 2.0.3)
2018
leidenAlg : Implements the Leiden Algorithm via an R Interface (Version 1.1.3)
2020
libbib : Various Utilities for Library Science/Assessment and Cataloging (Version 1.6.4)
2021
linkspotter : Bivariate Correlations Calculation and Visualization (Version 1.3.0)
2018
mable : Maximum Approximate Bernstein/Beta Likelihood Estimation (Version 3.1.3)
2018
manymome : Mediation, Moderation and Moderated-Mediation After Model Fitting (Version 0.1.14)
2022
mapi : Mapping Averaged Pairwise Information (Version 1.0.5)
2018
metafor : Meta-Analysis Package for R (Version 4.6-0)
2009
mirt : Multidimensional Item Response Theory (Version 1.41)
2011
mirtCAT : Computerized Adaptive Testing with Multidimensional Item Response Theory (Version 1.13)
2014
missoNet : Missingness in Multi-Task Regression with Network Estimation (Version 1.2.0)
2022
mixpoissonreg : Mixed Poisson Regression for Overdispersed Count Data (Version 1.0.0)
2021
mobr : Measurement of Biodiversity (Version 2.0.2)
2020
modelbpp : Model BIC Posterior Probability (Version 0.1.3)
2023
modnets : Modeling Moderated Networks (Version 0.9.0)
2021
mvDFA : Multivariate Detrended Fluctuation Analysis (Version 0.0.4)
2023
mvgam : Multivariate (Dynamic) Generalized Additive Models (Version 1.1.1)
2024
neonUtilities : Utilities for Working with NEON Data (Version 2.4.1)
2018
nestedcv : Nested Cross-Validation with 'glmnet' and 'caret' (Version 0.7.8)
2022
nettskjemar : Connect to the 'nettskjema.no' API of the University of Oslo (Version 0.1.4)
2021
ngspatial : Fitting the Centered Autologistic and Sparse Spatial Generalized Linear Mixed Models for Areal Data (Version 1.2-2)
2012
nhdplusTools : NHDPlus Tools (Version 1.0.0)
2019
nodeSub : Simulate DNA Alignments Using Node Substitutions (Version 1.2.8)
2022
ontoFAST : Interactive Annotation of Characters with Biological Ontologies (Version 1.0.0)
2021
opticut : Likelihood Based Optimal Partitioning and Indicator Species Analysis (Version 0.1-2)
2016
palaeoverse : Prepare and Explore Data for Palaeobiological Analyses (Version 1.3.0)
2022
parSim : Parallel Simulation Studies (Version 0.1.5)
2019
partR2 : Partitioning R2 in GLMMs (Version 0.9.2)
2021
pct : Propensity to Cycle Tool (Version 0.9.9)
2019
phenology : Tools to Manage a Parametric Function that Describes Phenology and More (Version 9.1)
2012
pmcalibration : Calibration Curves for Clinical Prediction Models (Version 0.1.0)
2023
polmineR : Verbs and Nouns for Corpus Analysis (Version 0.8.9)
2016
portfolioBacktest : Automated Backtesting of Portfolios over Multiple Datasets (Version 0.4.1)
2019
predictionInterval : Prediction Interval Functions for Assessing Replication Study Results (Version 1.0.0)
2016
predictNMB : Evaluate Clinical Prediction Models by Net Monetary Benefit (Version 0.2.1)
2023
psychonetrics : Structural Equation Modeling and Confirmatory Network Analysis (Version 0.11.6)
2019
puremoe : Pubmed Unified REtrieval for Multi-Output Exploration (Version 1.0.0)
2024
qgraph : Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation (Version 1.9.8)
2011
qsub : Running Commands Remotely on 'Gridengine' Clusters (Version 1.1.3)
2018
qte : Quantile Treatment Effects (Version 1.3.1)
2015
rPanglaoDB : Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB Database (Version 0.2.1)
2021
racademyocean : Client for 'AcademyOcean API' (Version 0.3.2)
2021
raceland : Pattern-Based Zoneless Method for Analysis and Visualization of Racial Topography (Version 1.2.1)
2019
ractivecampaign : Loading Data from 'ActiveCampaign API v3' (Version 0.2.0)
2021
rangeBuilder : Occurrence Filtering, Geographic Standardization and Generation of Species Range Polygons (Version 2.1)
2016
rdwd : Select and Download Climate Data from 'DWD' (German Weather Service) (Version 1.8.0)
2017
registr : Curve Registration for Exponential Family Functional Data (Version 2.1.0)
2020
retriever : Generate Disease-Specific Response Signatures from the LINCS-L1000 Data (Version 0.2.1)
2021
rfacebookstat : Load Data from Facebook API Marketing (Version 2.10.0)
2018
rgoogleads : Loading Data from 'Google Ads API' (Version 0.10.0)
2021
ri2 : Randomization Inference for Randomized Experiments (Version 0.4.0)
2018
rifreg : Estimate Recentered Influence Function Regression (Version 0.1.0)
2024
rlinkedinads : Load Data from 'Linkedin Advertising API' (Version 0.2.0)
2023
rnaturalearth : World Map Data from Natural Earth (Version 1.0.1)
2017
rphylopic : Get Silhouettes of Organisms from PhyloPic (Version 1.3.0)
2018
rptR : Repeatability Estimation for Gaussian and Non-Gaussian Data (Version 0.9.22)
2016
rytstat : Work with 'YouTube API' (Version 0.3.0)
2021
sNPLS : NPLS Regression with L1 Penalization (Version 1.0.27)
2016
saeRobust : Robust Small Area Estimation (Version 0.5.0)
2016
scCustomize : Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing (Version 2.1.2)
2022
scMappR : Single Cell Mapper (Version 1.0.11)
2020
scTenifoldKnk : In-Silico Knockout Experiments from Single-Cell Gene Regulatory Networks (Version 1.0.1)
2020
scTenifoldNet : Construct and Compare scGRN from Single-Cell Transcriptomic Data (Version 1.3)
2019
semlbci : Likelihood-Based Confidence Interval in Structural Equation Models (Version 0.10.4)
2023
sf : Simple Features for R (Version 1.0-16)
2016
sim.BA : Simulation-Based Bias Analysis for Observational Studies (Version 0.1.0)
2024
sirt : Supplementary Item Response Theory Models (Version 4.1-15)
2013
sklarsomega : Measuring Agreement Using Sklar's Omega Coefficient (Version 3.0-2)
2018
slimrec : Sparse Linear Method to Predict Ratings and Top-N Recommendations (Version 0.1.0)
2017
smacpod : Statistical Methods for the Analysis of Case-Control Point Data (Version 2.6)
2014
smerc : Statistical Methods for Regional Counts (Version 1.8.3)
2015
sonicscrewdriver : Bioacoustic Analysis and Publication Tools (Version 0.0.6)
2019
spaMM : Mixed-Effect Models, with or without Spatial Random Effects (Version 4.4.16)
2013
speccurvieR : Easy, Fast, and Pretty Specification Curve Analysis (Version 0.3.0)
2023
spectral : Common Methods of Spectral Data Analysis (Version 2.0)
2016
stars : Spatiotemporal Arrays, Raster and Vector Data Cubes (Version 0.6-5)
2018
stplanr : Sustainable Transport Planning (Version 1.2.0)
2015
strap : Stratigraphic Tree Analysis for Palaeontology (Version 1.6-0)
2014
success : Survival Control Charts Estimation Software (Version 1.0.1)
2022
svars : Data-Driven Identification of SVAR Models (Version 1.3.11)
2017
swaRmverse : Swarm Space Creation (Version 0.1.0)
2024
transforEmotion : Sentiment Analysis for Text, Image and Video using Transformer Models (Version 0.1.4)
2022
twosigma : DE Analysis for Single-Cell RNA-Sequencing Data (Version 1.0.2)
2021
uGMAR : Estimate Univariate Gaussian and Student's t Mixture Autoregressive Models (Version 3.4.5)
2017
ubms : Bayesian Models for Data from Unmarked Animals using 'Stan' (Version 1.2.6)
2021
uci : Urban Centrality Index (Version 0.3.0)
2023
ungroup : Penalized Composite Link Model for Efficient Estimation of Smooth Distributions from Coarsely Binned Data (Version 1.4.4)
2018
unmarked : Models for Data from Unmarked Animals (Version 1.4.1)
2010
varycoef : Modeling Spatially Varying Coefficients (Version 0.3.4)
2019
vesselr : Gradient and Vesselness Tools for Arrays and NIfTI Images (Version 0.2.1)
2017
warbleR : Streamline Bioacoustic Analysis (Version 1.1.30)
2015
wosr : Clients to the 'Web of Science' and 'InCites' APIs (Version 0.3.0)
2018
wqspt : Permutation Test for Weighted Quantile Sum Regression (Version 1.0.1)
2023
zebu : Local Association Measures (Version 0.2.2.0)
2016
zoomGroupStats : Analyze Text, Audio, and Video from 'Zoom' Meetings (Version 0.1.0)
2021
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RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN).
Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.
