R Package Scholar
27,088
Referenced by ⇅ Year
dnapath: Differential Network Analysis using Gene Pathways (Version 0.7.4)

2020
FPCA2D: Two Dimensional Functional Principal Component Analysis (Version 1.0)

2016
lvm4net: Latent Variable Models for Networks (Version 0.3)

2014
splitFeas: Multi-Set Split Feasibility (Version 0.1.0)

2018
wux: Wegener Center Climate Uncertainty Explorer (Version 2.2-1)

2014
cate: High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation (Version 1.1.1)

2015
esaBcv: Estimate Number of Latent Factors and Factor Matrix for Factor Analysis (Version 1.2.1.1)

2015
subselect: Selecting Variable Subsets (Version 0.15.5)

2002
qgg: Statistical Tools for Quantitative Genetic Analyses (Version 1.1.2)

2019
qgraph: Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation (Version 1.9.8)

2011
AZIAD: Analyzing Zero-Inflated and Zero-Altered Data (Version 0.0.3)

2022
BLCOP: Black-Litterman and Copula Opinion Pooling Frameworks (Version 0.3.3)

2008
BNrich: Pathway Enrichment Analysis Based on Bayesian Network (Version 0.1.1)

2020
BinNonNor: Data Generation with Binary and Continuous Non-Normal Components (Version 1.5.3)

2014
BinNor: Simultaneous Generation of Multivariate Binary and Normal Variates (Version 2.3.3)

2011
BinOrdNonNor: Concurrent Generation of Binary, Ordinal and Continuous Data (Version 1.5.2)

2015
COMBAT: A Combined Association Test for Genes using Summary Statistics (Version 0.0.4)

2017
CopulaCenR: Copula-Based Regression Models for Multivariate Censored Data (Version 1.2.3)

2019
EDISON: Network Reconstruction and Changepoint Detection (Version 1.1.1)

2012
EMC2: Bayesian Hierarchical Analysis of Cognitive Models of Choice (Version 2.1.0)

2024
ERP: Significance Analysis of Event-Related Potentials Data (Version 2.2)

2014
FADA: Variable Selection for Supervised Classification in High Dimension (Version 1.3.5)

2014
FRB: Fast and Robust Bootstrap (Version 2.0-1)

2009
FRCC: Fast Regularized Canonical Correlation Analysis (Version 1.1.0)

2012
GDILM.ME: Spatial Modeling of Infectious Diseases with Co-Variate Error (Version 1.2.1)

2024
GGMncv: Gaussian Graphical Models with Nonconvex Regularization (Version 2.1.1)

2020
GGMnonreg: Non-Regularized Gaussian Graphical Models (Version 1.0.0)

2021
GLSME: Generalized Least Squares with Measurement Error (Version 1.0.5)

2014
GWpcor: Geographically Weighted Partial Correlation Coefficient (Version 0.1.7)

2020
GeneNet: Modeling and Inferring Gene Networks (Version 1.2.16)

2006
GeneScape: Simulation of Single Cell RNA-Seq Data with Complex Structure (Version 1.0)

2023
GhostKnockoff: The Knockoff Inference Using Summary Statistics (Version 0.1.0)

2021
HDShOP: High-Dimensional Shrinkage Optimal Portfolios (Version 0.1.5)

2021
HSPOR: Hidden Smooth Polynomial Regression for Rupture Detection (Version 1.1.9)

2019
Hotelling: Hotelling's T^2 Test and Variants (Version 1.0-8)

2012
IRCcheck: Irrepresentable Condition Check (Version 1.0.0)

2021
MCMCglmm: MCMC Generalised Linear Mixed Models (Version 2.36)

2009
MECfda: Scalar-on-Function Regression with Measurement Error Correction (Version 0.1.0)

2024
MM4LMM: Inference of Linear Mixed Models Through MM Algorithm (Version 3.0.3)

2018
MetaHD: A Multivariate Meta-Analysis Model for High-Dimensional Metabolomics Data (Version 0.1.3)

2024
MetaIntegration: Ensemble Meta-Prediction Framework (Version 0.1.2)

2020
MultiOrd: Generation of Multivariate Ordinal Variates (Version 2.4.3)

2012
MultiVarMI: Multiple Imputation for Multivariate Data (Version 1.0)

2018
NMF: Algorithms and Framework for Nonnegative Matrix Factorization (NMF) (Version 0.28)

2009
NetOrigin: Origin Estimation for Propagation Processes on Complex Networks (Version 1.1-6)

2016
OUwie: Analysis of Evolutionary Rates in an OU Framework (Version 2.10)

2011
OrdNor: Concurrent Generation of Ordinal and Normal Data with Given Correlation Matrix and Marginal Distributions (Version 2.2.3)

2013
PCGII: Partial Correlation Graph with Information Incorporation (Version 1.1.2)

2024
PCRA: Companion to Portfolio Construction and Risk Analysis (Version 1.2)

2023
PoisBinNonNor: Data Generation with Poisson, Binary and Continuous Components (Version 1.3.3)

2015
PoisBinOrd: Data Generation with Poisson, Binary and Ordinal Components (Version 1.4.3)

2015
PoisBinOrdNonNor: Generation of Up to Four Different Types of Variables (Version 1.5.3)

2015
PoisBinOrdNor: Data Generation with Poisson, Binary, Ordinal and Normal Components (Version 1.6.3)

2015
PoisNonNor: Simultaneous Generation of Count and Continuous Data (Version 1.6.3)

2015
PoisNor: Simultaneous Generation of Multivariate Data with Poisson and Normal Marginals (Version 1.3.3)

2014
PortfolioAnalytics: Portfolio Analysis, Including Numerical Methods for Optimization of Portfolios (Version 2.0.0)

2015
REN: Regularization Ensemble for Robust Portfolio Optimization (Version 0.1.0)

2024
REndo: Fitting Linear Models with Endogenous Regressors using Latent Instrumental Variables (Version 2.4.10)

2015
RMTL: Regularized Multi-Task Learning (Version 0.9.9)

2019
RNGforGPD: Random Number Generation for Generalized Poisson Distribution (Version 1.1.0)

2018
SAMtool: Stock Assessment Methods Toolkit (Version 1.8.0)

2021
SCCS: The Self-Controlled Case Series Method (Version 1.7)

2018
SEMdeep: Structural Equation Modeling with Deep Neural Network and Machine Learning (Version 0.1.0)

2024
SEMgraph: Network Analysis and Causal Inference Through Structural Equation Modeling (Version 1.2.2)

2021
SLBDD: Statistical Learning for Big Dependent Data (Version 0.0.4)

2021
SimTimeVar: Simulate Longitudinal Dataset with Time-Varying Correlated Covariates (Version 1.0.0)

2017
StabilizedRegression: Stabilizing Regression and Variable Selection (Version 1.1)

2020
SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells (Version 1.0.1)

2024
TPCselect: Variable Selection via Threshold Partial Correlation (Version 0.8.3)

2022
VARshrink: Shrinkage Estimation Methods for Vector Autoregressive Models (Version 0.3.1)

2019
WLogit: Variable Selection in High-Dimensional Logistic Regression Models using a Whitening Approach (Version 2.1)

2022
bigmds: Multidimensional Scaling for Big Data (Version 3.0.0)

2021
biospear: Biomarker Selection in Penalized Regression Models (Version 1.0.2)

2017
bootnet: Bootstrap Methods for Various Network Estimation Routines (Version 1.6)

2015
boral: Bayesian Ordination and Regression AnaLysis (Version 2.0.2)

2014
cape: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice (Version 3.1.2)

2013
carSurv: Correlation-Adjusted Regression Survival (CARS) Scores (Version 1.0.0)

2018
care: High-Dimensional Regression and CAR Score Variable Selection (Version 1.1.11)

2010
clustrd: Methods for Joint Dimension Reduction and Clustering (Version 1.4.0)

2013
corHMM: Hidden Markov Models of Character Evolution (Version 2.8)

2013
covequal: Test for Equality of Covariance Matrices (Version 0.1.0)

2017
deepgmm: Deep Gaussian Mixture Models (Version 0.2.1)

2019
fMRIscrub: Scrubbing and Other Data Cleaning Routines for fMRI (Version 0.14.5)

2021
fMRItools: Routines for Common fMRI Processing Tasks (Version 0.4.7)

2022
facmodTS: Time Series Factor Models for Asset Returns (Version 1.0)

2023
flap: Forecast Linear Augmented Projection (Version 0.2.0)

2024
fspe: Estimating the Number of Factors in EFA with Out-of-Sample Prediction Errors (Version 0.1.2)

2021
graphicalExtremes: Statistical Methodology for Graphical Extreme Value Models (Version 0.3.2)

2019
gsDesign2: Group Sequential Design with Non-Constant Effect (Version 1.1.2)

2023
gwpcormapper: Geographically Weighted Partial Correlation Mapper (Version 0.1.3)

2021
hfr: Estimate Hierarchical Feature Regression Models (Version 0.7.1)

2022
iTOP: Inferring the Topology of Omics Data (Version 1.0.2)

2018
idm: Incremental Decomposition Methods (Version 1.8.3)

2015
jackstraw: Statistical Inference for Unsupervised Learning (Version 1.3.17)

2014
knockoff: The Knockoff Filter for Controlled Variable Selection (Version 0.3.6)

2014
leakyIV: Leaky Instrumental Variables (Version 0.0.1)

2024
leapp: Latent Effect Adjustment After Primary Projection (Version 1.3)

2012
list: Statistical Methods for the Item Count Technique and List Experiment (Version 9.2.6)

2010
longitudinal: Analysis of Multiple Time Course Data (Version 1.1.13)

2006
lvnet: Latent Variable Network Modeling (Version 0.3.5)

2016
mglasso: Multiscale Graphical Lasso (Version 0.1.2)

2022
miRtest: Combined miRNA- And mRNA-Testing (Version 2.1)

2011
mlVAR: Multi-Level Vector Autoregression (Version 0.5.2)

2015
modnets: Modeling Moderated Networks (Version 0.9.0)

2021
multivarious: Extensible Data Structures for Multivariate Analysis (Version 0.2.0)

2024
mvMORPH: Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data (Version 1.2.1)

2013
netassoc: Inference of Species Associations from Co-Occurrence Data (Version 0.7.0)

2015
netgsa: Network-Based Gene Set Analysis (Version 4.0.5)

2014
parma: Portfolio Allocation and Risk Management Applications (Version 1.7)

2013
pcalg: Methods for Graphical Models and Causal Inference (Version 2.7-12)

2006
pcev: Principal Component of Explained Variance (Version 2.2.2)

2016
penalizedSVM: Feature Selection SVM using Penalty Functions (Version 1.1.4)

2009
perARMA: Periodic Time Series Analysis (Version 1.7)

2013
phantSEM: Create Phantom Variables in Structural Equation Models for Sensitivity Analyses (Version 1.0.0.0)

2023
picante: Integrating Phylogenies and Ecology (Version 1.8.2)

2008
pivmet: Pivotal Methods for Bayesian Relabelling and k-Means Clustering (Version 0.6.0)

2018
psychonetrics: Structural Equation Modeling and Confirmatory Network Analysis (Version 0.13)

2019
qtlhot: Inference for QTL Hotspots (Version 1.0.4)

2012
r4ss: R Code for Stock Synthesis (Version 1.44.0)

2009
ratematrix: Bayesian Estimation of the Evolutionary Rate Matrix (Version 1.2.4)

2018
relaimpo: Relative Importance of Regressors in Linear Models (Version 2.2-7)

2005
rmgarch: Multivariate GARCH Models (Version 1.3-9)

2013
sae.prop: Small Area Estimation using Fay-Herriot Models with Additive Logistic Transformation (Version 0.1.2)

2022
sda: Shrinkage Discriminant Analysis and CAT Score Variable Selection (Version 1.3.8)

2008
seedCCA: Seeded Canonical Correlation Analysis (Version 3.1)

2017
segMGarch: Multiple Change-Point Detection for High-Dimensional GARCH Processes (Version 1.2)

2018
semPlot: Path Diagrams and Visual Analysis of Various SEM Packages' Output (Version 1.1.6)

2013
sharp: Stability-enHanced Approaches using Resampling Procedures (Version 1.4.6)

2022
sparsediscrim: Sparse and Regularized Discriminant Analysis (Version 0.3.0)

2013
sparsevar: Sparse VAR/VECM Models Estimation (Version 0.1.0)

2016
spduration: Split-Population Duration (Cure) Regression (Version 0.17.2)

2015
st: Shrinkage t Statistic and Correlation-Adjusted t-Score (Version 1.2.7)

2006
ttScreening: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples (Version 1.6)

2013
vampyr: Factor Analysis Controlling the Effects of Response Bias (Version 1.1.1)

2020
varTestnlme: Variance Components Testing for Linear and Nonlinear Mixed Effects Models (Version 1.3.5)

2020
whitening: Whitening and High-Dimensional Canonical Correlation Analysis (Version 1.4.0)

2018
xLLiM: High Dimensional Locally-Linear Mapping (Version 2.3)

2016

RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN). Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.

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