SeuratObject: Data Structures for Single Cell Data

Canonical link: https://rscholar.com/pkg/SeuratObject

Paul Hoffman • Rahul Satija • David Collins • Yuhan Hao • Austin Hartman • Gesmira Molla • Andrew Butler • Tim Stuart • Madeline Kowalski • Saket Choudhary • Skylar Li • Longda Jiang • Jeff Farrell • Shiwei Zheng • Christoph Hafemeister • Patrick Roelli • View description and downloads View dependencies GitHub project

2021 Published

5.0.2 Version

0 Citations

16 Authors

Referenced by ⇅	Year
APackOfTheClones: Visualization of Clonal Expansion for Single Cell Immune Profiles (Version 1.2.4)	2023
CAMML: Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling (Version 1.0.0)	2021
CytoSimplex: Simplex Visualization of Cell Fate Similarity in Single-Cell Data (Version 0.1.1)	2023
Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)	2021
RESET: Reconstruction Set Test (Version 1.0.0)	2023
SCIntRuler: Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets (Version 0.99.6)	2024
SCpubr: Generate Publication Ready Visualizations of Single Cell Transcriptomics Data (Version 2.0.2)	2022
SPECK: Receptor Abundance Estimation using Reduced Rank Reconstruction and Clustered Thresholding (Version 1.0.0)	2022
Seurat: Tools for Single Cell Genomics (Version 5.1.0)	2017
Signac: Analysis of Single-Cell Chromatin Data (Version 1.14.0)	2020
SpaTopic: Topic Inference to Identify Tissue Architecture in Multiplexed Images (Version 1.1.0)	2024
VAM: Variance-Adjusted Mahalanobis (Version 1.1.0)	2021
bbknnR: Perform Batch Balanced KNN in R (Version 1.1.1)	2022
cellpypes: Cell Type Pipes for Single-Cell RNA Sequencing Data (Version 0.3.0)	2022
mxfda: A Functional Data Analysis Package for Spatial Single Cell Data (Version 0.2.2)	2024
rliger: Linked Inference of Genomic Experimental Relationships (Version 2.1.0)	2021
scAnnotate: An Automated Cell Type Annotation Tool for Single-Cell RNA-Sequencing Data (Version 0.3)	2022
scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing (Version 3.0.0)	2022
scOntoMatch: Aligning Ontology Annotation Across Single Cell Datasets with 'scOntoMatch' (Version 0.1.1)	2022
scaper: Single Cell Transcriptomics-Level Cytokine Activity Prediction and Estimation (Version 0.1.0)	2023
scpoisson: Single Cell Poisson Probability Paradigm (Version 0.0.1)	2022
singleCellHaystack: A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data (Version 1.0.2)	2020
tidyseurat: Brings Seurat to the Tidyverse (Version 0.8.0)	2020

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