Rtsne: T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation

Canonical link: https://rscholar.com/pkg/Rtsne

Jesse Krijthe • Laurens van der Maaten • View description and downloads View dependencies GitHub project

2014 Published

0.17 Version

0 Citations

2 Authors

Referenced by ⇅	Year
bcTSNE: Projected t-SNE for Batch Correction (Version 0.11.1)	2020
PALMO: Identify Intra and Inter-Donor Variations in Bulk or Single Cell Longitudinal Dataset (Version 0.1.2)	2022
spathial: Evolutionary Analysis (Version 0.1.2)	2020
MOSS: Multi-Omic Integration via Sparse Singular Value Decomposition (Version 0.2.2)	2021
AutoPipe: Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis (Version 0.1.6)	2019
CINNA: Deciphering Central Informative Nodes in Network Analysis (Version 1.2.2)	2017
EmbedSOM: Fast Embedding Guided by Self-Organizing Map (Version 2.1.2)	2019
Evacluster: Evaluation Clustering Methods for Disease Subtypes Diagnosis (Version 0.1.0)	2022
EvoPhylo: Pre- And Postprocessing of Morphological Data from Relaxed Clock Bayesian Phylogenetics (Version 0.3.2)	2022
FateID: Quantification of Fate Bias in Multipotent Progenitors (Version 0.2.2)	2017
HDclust: Clustering High Dimensional Data with Hidden Markov Model on Variable Blocks (Version 1.0.4)	2018
HVT: Constructing Hierarchical Voronoi Tessellations and Overlay Heatmaps for Data Analysis (Version 24.9.1)	2023
KODAMA: Knowledge Discovery by Accuracy Maximization (Version 2.4.1)	2014
MBMethPred: Medulloblastoma Subgroups Prediction (Version 0.1.4.2)	2022
Mercator: Clustering and Visualizing Distance Matrices (Version 1.1.5)	2019
MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis (Version 0.10.1)	2024
NGCHM: Next Generation Clustered Heat Maps (Version 1.0.3)	2024
PAC: Partition-Assisted Clustering and Multiple Alignments of Networks (Version 1.1.4)	2016
Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis (Version 3.6.0)	2021
ProjectionBasedClustering: Projection Based Clustering (Version 1.2.2)	2017
PsychWordVec: Word Embedding Research Framework for Psychological Science (Version 2023.9)	2022
RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data (Version 0.3.9)	2018
SNPfiltR: Interactively Filter SNP Datasets (Version 1.0.1)	2021
Seurat: Tools for Single Cell Genomics (Version 5.1.0)	2017
SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells (Version 1.0.1)	2024
UCSCXenaShiny: Interactive Analysis of UCSC Xena Data (Version 2.1.0)	2019
WormTensor: A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans' (Version 0.1.1)	2022
ZetaSuite: Analyze High-Dimensional High-Throughput Dataset and Quality Control Single-Cell RNA-Seq (Version 1.0.1)	2022
bbknnR: Perform Batch Balanced KNN in R (Version 1.1.1)	2022
coRanking: Co-Ranking Matrix (Version 0.2.5)	2016
conos: Clustering on Network of Samples (Version 1.5.2)	2021
densityClust: Clustering by Fast Search and Find of Density Peaks (Version 0.3.3)	2014
diceR: Diverse Cluster Ensemble in R (Version 2.2.0)	2017
dimRed: A Framework for Dimensionality Reduction (Version 0.2.6)	2017
dyndimred: Dimensionality Reduction Methods in a Common Format (Version 1.0.4)	2019
fastTopics: Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data (Version 0.6-192)	2022
fdm2id: Data Mining and R Programming for Beginners (Version 0.9.9)	2019
ggpca: Publication-Ready PCA, t-SNE, and UMAP Plots (Version 0.1.2)	2024
iCellR: Analyzing High-Throughput Single Cell Sequencing Data (Version 1.6.7)	2019
immunarch: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires (Version 0.9.1)	2020
immunaut: Machine Learning Immunogenicity and Vaccine Response Analysis (Version 1.0.1)	2024
inferCSN: Inferring Cell-Specific Gene Regulatory Network (Version 1.0.8)	2023
labdsv: Ordination and Multivariate Analysis for Ecology (Version 2.1-0)	2005
liminal: Multivariate Data Visualization with Tours and Embeddings (Version 0.1.2)	2021
maotai: Tools for Matrix Algebra, Optimization and Inference (Version 0.2.5)	2019
mmb: Arbitrary Dependency Mixed Multivariate Bayesian Models (Version 0.13.3)	2020
pagoda2: Single Cell Analysis and Differential Expression (Version 1.0.12)	2021
pctax: Professional Comprehensive Omics Data Analysis (Version 0.1.3)	2024
randomcoloR: Generate Attractive Random Colors (Version 1.1.0.1)	2016
rliger: Linked Inference of Genomic Experimental Relationships (Version 2.1.0)	2021
scRNAtools: Single Cell RNA Sequencing Data Analysis Tools (Version 1.0)	2018
seriation: Infrastructure for Ordering Objects Using Seriation (Version 1.5.7)	2007
stm: Estimation of the Structural Topic Model (Version 1.3.7)	2014
swaRmverse: Swarm Space Creation (Version 0.1.1)	2024
theftdlc: Analyse and Interpret Time Series Features (Version 0.1.2)	2024
tinyarray: Expression Data Analysis and Visualization (Version 2.4.2)	2021
visvow: Visible Vowels: Visualization of Vowel Variation (Version 1.3.11)	2018

RPKG Scholar presents a tabulation of an author's contribution in the development of R packages stored in the Comprehensive R Archive Network (CRAN). Within this site, we consider package dependencies (suggests,imports,depends,enhances) as citations because we believe that using one's package to develop another is tantamount to citing the author of the package being imported, suggested or enhanced.