R Package Scholar
16,990

Rdpack: Update and Manipulate Rd Documentation Objects

Georgi N. Boshnakov  Duncan Murdoch   View description and downloadsView dependenciesGitHub project

2012 Published
2.6 Version
0 Citations
2 Authors
Referenced by ⇅ Year
bartBMA: Bayesian Additive Regression Trees using Bayesian Model Averaging (Version 1.0)

2020
BBcor: Bayesian Bootstrapping Correlations (Version 1.0.3)

2020
chickn: "Compressive" Hierarchical Kernel Clustering Toolbox (Version 1.2.3)

2020
cort: Some Empiric and Nonparametric Copula Models (Version 0.3.2)

2020
DCD: Differential Community Detection in Paired Biological Networks (Version 0.1.0)

2017
dnapath: Differential Network Analysis using Gene Pathways (Version 0.7.4)

2020
dsfa: Distributional Stochastic Frontier Analysis (Version 2.0.2)

2022
dtwSat: Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis (Version 1.0.0)

2015
DynComm: Dynamic Network Communities Detection and Generation (Version 2020.1.6)

2020
GeoFIS: Spatial Data Processing for Decision Making (Version 1.0.4)

2021
hdtg: Generate Samples from Multivariate Truncated Normal Distributions (Version 0.2.0)

2022
mhurdle: Multiple Hurdle Tobit Models (Version 1.3-0)

2010
netjack: Tools for Working with Samples of Networks (Version 1.2.0)

2018
piRF: Prediction Intervals for Random Forests (Version 0.1.0)

2020
plot3logit: Ternary Plots for Trinomial Regression Models (Version 3.1.4)

2019
ProbReco: Score Optimal Probabilistic Forecast Reconciliation (Version 0.1.2)

2020
RcppEigenAD: Compiles "C++" Code using "Rcpp", "Eigen" and "CppAD" to Produce First and Second Order Partial Derivatives (Version 1.0.0)

2018
RGISTools: Handling Multiplatform Satellite Images (Version 1.0.2)

2019
smog: Structural Modeling by using Overlapped Group Penalty (Version 2.1.0)

2019
spflow: Spatial Econometric Interaction Models (Version 0.1.0)

2021
truthiness: Illusory Truth Longitudinal Study (Version 1.2.5)

2021
tukeyGH: Tukey"s g-and-h Probability Distribution (Version 1.0.0)

2021
MSinference: Multiscale Inference for Nonparametric Time Trend(s) (Version 0.0.9)

2023
rgudhi: An Interface to the GUDHI Library for Topological Data Analysis (Version 0.2.0)

2023
NRAHDLTP: Location Tests for High-Dimensional Problems Including Normal-Reference Approach (Version 0.1.2)

2023
expertsurv: Incorporate Expert Opinion with Parametric Survival Models (Version 1.3.0)

2023
ggchangepoint: Combines Changepoint Analysis with 'ggplot2' (Version 0.1.0)

2022
ggseqplot: Render Sequence Plots using 'ggplot2' (Version 0.8.3)

2022
mlmhelpr: Multilevel/Mixed Model Helper Functions (Version 0.1.0)

2022
mlogit: Multinomial Logit Models (Version 1.1-1)

2008
mlmts: Machine Learning Algorithms for Multivariate Time Series (Version 1.1.1)

2022
ADMM: Algorithms using Alternating Direction Method of Multipliers (Version 0.3.3)

2017
ANOFA: Analyses of Frequency Data (Version 0.1.3)

2023
ANOPA: Analyses of Proportions using Anscombe Transform (Version 0.1.3)

2024
ARCensReg: Fitting Univariate Censored Linear Regression Model with Autoregressive Errors (Version 3.0.1)

2016
ATAforecasting: Automatic Time Series Analysis and Forecasting using the Ata Method (Version 0.0.60)

2021
AlphaSimR: Breeding Program Simulations (Version 1.5.3)

2018
AntMAN: Anthology of Mixture Analysis Tools (Version 1.1.0)

2019
AssetCorr: Estimating Asset Correlations from Default Data (Version 1.0.4)

2018
BCEA: Bayesian Cost Effectiveness Analysis (Version 2.4.6)

2012
BGGM: Bayesian Gaussian Graphical Models (Version 2.1.1)

2020
BSL: Bayesian Synthetic Likelihood (Version 3.2.5)

2018
BayesCACE: Bayesian Model for CACE Analysis (Version 1.2.3)

2021
BayesDLMfMRI: Statistical Analysis for Task-Based Fmri Data (Version 0.0.3)

2023
BayesMallows: Bayesian Preference Learning with the Mallows Rank Model (Version 2.1.1)

2018
BayesMassBal: Bayesian Data Reconciliation of Separation Processes (Version 1.1.0)

2020
BayesMultMeta: Bayesian Multivariate Meta-Analysis (Version 0.1.1)

2022
BayesMultiMode: Bayesian Mode Inference (Version 0.7.1)

2022
BayesProject: Fast Projection Direction for Multivariate Changepoint Detection (Version 1.0)

2020
BayesRGMM: Bayesian Robust Generalized Mixed Models for Longitudinal Data (Version 2.2)

2021
BayesTools: Tools for Bayesian Analyses (Version 0.2.17)

2021
BayesianFactorZoo: Bayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models (Version 0.0.0.2)

2023
BayesianLaterality: Predict Brain Asymmetry Based on Handedness and Dichotic Listening (Version 0.1.2)

2020
Bayesrel: Bayesian Reliability Estimation (Version 0.7.7)

2019
BlockCov: Estimation of Large Block Covariance Matrices (Version 0.1.1)

2018
BrailleR: Improved Access for Blind Users (Version 1.0.2)

2012
CARRoT: Predicting Categorical and Continuous Outcomes Using One in Ten Rule (Version 3.0.2)

2018
CIfinder: Estimate the Confidence Intervals for Predictive Values (Version 2.0.0)

2023
CMAPSS: Commercial Modular Aero-Propulsion System Simulation Data Set (Version 0.1.1)

2021
CPAT: Change Point Analysis Tests (Version 0.1.0)

2018
CatReg: Solution Paths for Linear and Logistic Regression Models with Categorical Predictors, with SCOPE Penalty (Version 2.0.3)

2020
CircularSilhouette: Fast Silhouette on Circular or Linear Data Clusters (Version 0.0.1)

2022
Ckmeans.1d.dp: Optimal, Fast, and Reproducible Univariate Clustering (Version 4.3.5)

2010
CohensdpLibrary: Cohen's D_p Computation with Confidence Intervals (Version 0.5.10)

2022
Coinprofile: Coincident Profile (Version 0.1.9)

2019
Countr: Flexible Univariate Count Models Based on Renewal Processes (Version 3.5.8)

2016
CovTools: Statistical Tools for Covariance Analysis (Version 0.5.4)

2017
Coxmos: Cox MultiBlock Survival (Version 1.0.2)

2024
DAAG: Data Analysis and Graphics Data and Functions (Version 1.25.4)

2005
DOSPortfolio: Dynamic Optimal Shrinkage Portfolio (Version 0.1.0)

2021
DPpack: Differentially Private Statistical Analysis and Machine Learning (Version 0.1.0)

2022
DPtree: Dirichlet-Based Polya Tree (Version 1.0.1)

2018
DemoDecomp: Decompose Demographic Functions (Version 1.0.1)

2018
DiSCos: Distributional Synthetic Controls Estimation (Version 0.0.1)

2024
DiffXTables: Pattern Analysis Across Contingency Tables (Version 0.1.3)

2019
DisaggregateTS: High-Dimensional Temporal Disaggregation (Version 2.0.0)

2022
EgoCor: Simple Presentation of Estimated Exponential Semi-Variograms (Version 1.2.0)

2022
EloChoice: Preference Rating for Visual Stimuli Based on Elo Ratings (Version 0.29.4)

2015
EloRating: Animal Dominance Hierarchies by Elo Rating (Version 0.46.11)

2014
EmiR: Evolutionary Minimizer for R (Version 1.0.4)

2021
EstimationTools: Maximum Likelihood Estimation for Probability Functions from Data Sets (Version 4.0.0)

2019
EvaluateCore: Quality Evaluation of Core Collections (Version 0.1.3)

2020
FDRestimation: Estimate, Plot, and Summarize False Discovery Rates (Version 1.0.1)

2020
FSinR: Feature Selection (Version 2.0.5)

2019
FisPro: Fuzzy Inference System Design and Optimization (Version 1.1.4)

2019
FitDynMix: Estimation of Dynamic Mixtures (Version 1.0.0)

2023
FunChisq: Model-Free Functional Chi-Squared and Exact Tests (Version 2.5.3)

2014
FuzzyClass: Fuzzy and Non-Fuzzy Classifiers (Version 0.1.6)

2022
GGMncv: Gaussian Graphical Models with Nonconvex Regularization (Version 2.1.1)

2020
GGMnonreg: Non-Regularized Gaussian Graphical Models (Version 1.0.0)

2021
GGUM: Generalized Graded Unfolding Model (Version 0.5)

2018
GridOnClusters: Cluster-Preserving Multivariate Joint Grid Discretization (Version 0.1.0)

2020
HCTDesign: Group Sequential Design for Historical Control Trial with Survival Outcome (Version 0.7.2)

2022
HCTR: Higher Criticism Tuned Regression (Version 0.1.1)

2019
HDCD: High-Dimensional Changepoint Detection (Version 1.0)

2023
HDNRA: High-Dimensional Location Testing with Normal-Reference Approaches (Version 1.0.0)

2024
HDShOP: High-Dimensional Shrinkage Optimal Portfolios (Version 0.1.5)

2021
HMMEsolver: A Fast Solver for Henderson Mixed Model Equation via Row Operations (Version 0.1.2)

2017
HOasso: Higher Order Assortativity for Complex Networks (Version 1.0.1)

2023
HazardDiff: Conditional Treatment Effect for Competing Risks (Version 0.1.0)

2021
IADT: Interaction Difference Test for Prediction Models (Version 1.0.0)

2023
IETD: Inter-Event Time Definition (Version 1.0.0)

2020
IRCcheck: Irrepresentable Condition Check (Version 1.0.0)

2021
ISS: Isotonic Subgroup Selection (Version 1.0.0)

2023
IndepTest: Nonparametric Independence Tests Based on Entropy Estimation (Version 0.2.0)

2017
Irescale: Calculate and Rectify Moran's I (Version 2.3.0)

2019
LNPar: Estimation and Testing for a Lognormal-Pareto Mixture (Version 0.1.0)

2023
LSTS: Locally Stationary Time Series (Version 2.1)

2015
MBNMAdose: Dose-Response MBNMA Models (Version 0.4.2)

2019
MBNMAtime: Run Time-Course Model-Based Network Meta-Analysis (MBNMA) Models (Version 0.2.4)

2019
MCARtest: Optimal Nonparametric Testing of Missing Completely at Random (Version 1.2.1)

2022
MDBED: Moran-Downton Bivariate Exponential Distribution (Version 1.0.0)

2020
MGDrivE: Mosquito Gene Drive Explorer (Version 1.6.0)

2019
MLMOI: Estimating Frequencies, Prevalence and Multiplicity of Infection (Version 0.1.2)

2020
MSCMT: Multivariate Synthetic Control Method Using Time Series (Version 1.4.0)

2016
MSCquartets: Analyzing Gene Tree Quartets under the Multi-Species Coalescent (Version 2.0)

2019
MSCsimtester: Tests of Multispecies Coalescent Gene Tree Simulator Output (Version 1.0.0)

2021
MetabolicSurv: A Biomarker Validation Approach for Classification and Predicting Survival Using Metabolomics Signature (Version 1.1.2)

2019
MultSurvTests: Permutation Tests for Multivariate Survival Analysis (Version 0.2)

2021
MultipleBreakpoints: Estimating Multiple Breakpoints for a Sequence of Realizations of Bernoulli Variables (Version 0.1.0)

2021
NFCP: N-Factor Commodity Pricing Through Term Structure Estimation (Version 1.2.1)

2021
NMADiagT: Network Meta-Analysis of Multiple Diagnostic Tests (Version 0.1.2)

2020
NTS: Nonlinear Time Series Analysis (Version 1.1.3)

2018
NetworkDistance: Distance Measures for Networks (Version 0.3.4)

2017
NlinTS: Models for Non Linear Causality Detection in Time Series (Version 1.4.5)

2018
OncoSubtype: Predict Cancer Subtypes Based on TCGA Data using Machine Learning Method (Version 1.0.0)

2024
OptCirClust: Circular, Periodic, or Framed Data Clustering: Fast, Optimal, and Reproducible (Version 0.0.4)

2020
OptimaRegion: Confidence Regions for Optima of Response Surfaces (Version 1.2)

2016
OptimalGoldstandardDesigns: Design Parameter Optimization for Gold-Standard Non-Inferiority Trials (Version 1.0.1)

2023
PHInfiniteEstimates: Tools for Inference in the Presence of a Monotone Likelihood (Version 2.9.5)

2020
PINstimation: Estimation of the Probability of Informed Trading (Version 0.1.2)

2022
POSetR: Partially Ordered Sets in R (Version 1.1.4)

2021
ProcMod: Informative Procrustean Matrix Correlation (Version 1.0.8)

2019
PublicationBias: Sensitivity Analysis for Publication Bias in Meta-Analyses (Version 2.4.0)

2019
QTOCen: Quantile-Optimal Treatment Regimes with Censored Data (Version 0.1.1)

2019
Quartet: Comparison of Phylogenetic Trees Using Quartet and Split Measures (Version 1.2.6)

2019
R2Addhaz: R2 Measure of Explained Variation under the Additive Hazards Model (Version 0.1.0)

2020
RARfreq: Response Adaptive Randomization with 'Frequentist' Approaches (Version 0.1.4)

2023
RCTS: Clustering Time Series While Resisting Outliers (Version 0.2.4)

2022
RChest: Locating Distributional Changes in Highly Dependent Time Series (Version 1.0.3)

2021
RGCxGC: Preprocessing and Multivariate Analysis of Bidimensional Gas Chromatography Data (Version 1.2.0)

2019
ROptSpace: Matrix Reconstruction from a Few Entries (Version 0.2.3)

2017
Raquifer: Estimate the Water Influx into Hydrocarbon Reservoirs (Version 0.1.0)

2020
RcppCensSpatial: Spatial Estimation and Prediction for Censored/Missing Responses (Version 0.3.0)

2021
Rcurvep: Concentration-Response Data Analysis using Curvep (Version 1.3.1)

2021
Rdimtools: Dimension Reduction and Estimation Methods (Version 1.1.2)

2017
Rdta: Data Transforming Augmentation for Linear Mixed Models (Version 1.0.1)

2020
RelDists: Estimation for some Reliability Distributions (Version 1.0.0)

2022
Ricrt: Randomization Inference of Clustered Randomized Trials (Version 0.1.0)

2023
RiemBase: Functions and C++ Header Files for Computation on Manifolds (Version 0.2.5)

2018
Riemann: Learning with Data on Riemannian Manifolds (Version 0.1.4)

2020
Rlinsolve: Iterative Solvers for (Sparse) Linear System of Equations (Version 0.3.2)

2017
RoBMA: Robust Bayesian Meta-Analyses (Version 3.1.0)

2020
RoBSA: Robust Bayesian Survival Analysis (Version 1.0.2)

2022
RoBTT: Robust Bayesian T-Test (Version 1.3.0)

2022
RobKF: Innovative and/or Additive Outlier Robust Kalman Filtering (Version 1.0.2)

2020
Rogue: Identify Rogue Taxa in Sets of Phylogenetic Trees (Version 2.1.6)

2021
RprobitB: Bayesian Probit Choice Modeling (Version 1.1.4)

2021
SBmedian: Scalable Bayes with Median of Subset Posteriors (Version 0.1.1)

2020
SDCNway: Tools to Evaluate Disclosure Risk (Version 1.0.1)

2020
SEset: Computing Statistically-Equivalent Path Models (Version 1.0.1)

2022
SHT: Statistical Hypothesis Testing Toolbox (Version 0.1.8)

2019
SNPknock: Knockoffs for Hidden Markov Models and Genetic Data (Version 0.8.2)

2018
SWIM: Scenario Weights for Importance Measurement (Version 1.0.0)

2019
SeqNet: Generate RNA-Seq Data from Gene-Gene Association Networks (Version 1.1.3)

2019
ShapleyOutlier: Multivariate Outlier Explanations using Shapley Values and Mahalanobis Distances (Version 0.1.1)

2022
StableEstim: Estimate the Four Parameters of Stable Laws using Different Methods (Version 2.2)

2014
StempCens: Spatio-Temporal Estimation and Prediction for Censored/Missing Responses (Version 1.1.0)

2019
SurvHiDim: High Dimensional Survival Data Analysis (Version 0.1.1)

2021
SynthTools: Tools and Tests for Experiments with Partially Synthetic Data Sets (Version 1.0.1)

2019
T4cluster: Tools for Cluster Analysis (Version 0.1.2)

2020
T4transport: Tools for Computational Optimal Transport (Version 0.1.2)

2020
TBRDist: Rearrangement Distances Between Unrooted Phylogenetic Trees (Version 1.0.2)

2020
TDAkit: Toolkit for Topological Data Analysis (Version 0.1.2)

2021
TDLM: Systematic Comparison of Trip Distribution Laws and Models (Version 1.0.0)

2023
TOU: Transformed Ornstein-Uhlenbeck Model for Adsorption Kinetics (Version 0.1.0)

2022
TSdisaggregation: High-Dimensional Temporal Disaggregation (Version 2.0.0)

2022
TreeDimensionTest: Trajectory Presence and Heterogeneity in Multivariate Data (Version 0.0.2)

2022
TreeDist: Calculate and Map Distances Between Phylogenetic Trees (Version 2.7.0)

2020
TreeSearch: Phylogenetic Analysis with Discrete Character Data (Version 1.5.0)

2017
TreeTools: Create, Modify and Analyse Phylogenetic Trees (Version 1.10.0)

2019
TrenchR: Tools for Microclimate and Biophysical Ecology (Version 1.1.1)

2022
USP: U-Statistic Permutation Tests of Independence for all Data Types (Version 0.1.2)

2020
WALS: Weighted-Average Least Squares Model Averaging (Version 0.2.4)

2023
accessibility: Transport Accessibility Measures (Version 1.4.0)

2022
adestr: Estimation in Optimal Adaptive Two-Stage Designs (Version 0.5.0)

2023
admmDensestSubmatrix: Alternating Direction Method of Multipliers to Solve Dense Dubmatrix Problem (Version 0.1.0)

2019
ahpsurvey: Analytic Hierarchy Process for Survey Data (Version 0.4.1)

2018
ammistability: Additive Main Effects and Multiplicative Interaction Model Stability Parameters (Version 0.1.4)

2018
amt: Animal Movement Tools (Version 0.2.2.0)

2018
anomaly: Detecting Anomalies in Data (Version 4.3.2)

2018
atpolR: ATPOL Grid Implementation (Version 0.1.1)

2022
augmentedRCBD: Analysis of Augmented Randomised Complete Block Designs (Version 0.1.7)

2018
autoMFA: Algorithms for Automatically Fitting MFA Models (Version 1.0.0)

2021
baldur: Bayesian Hierarchical Modeling for Label-Free Proteomics (Version 0.0.3)

2023
bamm: Species Distribution Models as a Function of Biotic, Abiotic and Movement Factors (BAM) (Version 0.4.3)

2022
bellreg: Count Regression Models Based on the Bell Distribution (Version 0.0.2)

2020
bfast: Breaks for Additive Season and Trend (Version 1.6.1)

2009
bgms: Bayesian Analysis of Networks of Binary and/or Ordinal Variables (Version 0.1.3)

2023
biblionetwork: Create Different Types of Bibliometric Networks (Version 0.1.0)

2021
bigDM: Scalable Bayesian Disease Mapping Models for High-Dimensional Data (Version 0.5.3)

2022
binGroup: Evaluation and Experimental Design for Binomial Group Testing (Version 2.2-1)

2007
binGroup2: Identification and Estimation using Group Testing (Version 1.3.1)

2020
bioregion: Comparison of Bioregionalisation Methods (Version 1.1.0)

2023
bmgarch: Bayesian Multivariate GARCH Models (Version 2.0.0)

2020
bmstdr: Bayesian Modeling of Spatio-Temporal Data with R (Version 0.7.9)

2022
bolasso: Model Consistent Lasso Estimation Through the Bootstrap (Version 0.2.0)

2022
bondAnalyst: Methods for Fixed-Income Valuation, Risk and Return (Version 1.0.1)

2022
boot.pval: Bootstrap p-Values (Version 0.5)

2021
bsitar: Bayesian Super Imposition by Translation and Rotation Growth Curve Analysis (Version 0.2.1)

2023
bulletcp: Automatic Groove Identification via Bayesian Changepoint Detection (Version 1.0.0)

2019
cSEM: Composite-Based Structural Equation Modeling (Version 0.5.0)

2020
care4cmodel: Carbon-Related Assessment of Silvicultural Concepts (Version 1.0.1)

2023
ccostr: Estimation of Mean Costs in Censored Data (Version 0.1.0)

2019
changepoint.geo: Geometrically Inspired Multivariate Changepoint Detection (Version 1.0.2)

2020
changepoint.np: Methods for Nonparametric Changepoint Detection (Version 1.0.5)

2016
chkptstanr: Checkpoint MCMC Sampling with 'Stan' (Version 0.1.1)

2022
cjbart: Heterogeneous Effects Analysis of Conjoint Experiments (Version 0.3.2)

2021
clustAnalytics: Cluster Evaluation on Graphs (Version 0.5.5)

2022
cmtest: Conditional Moments Test (Version 0.1-2)

2021
conleyreg: Estimations using Conley Standard Errors (Version 0.1.7)

2021
cpd: Complex Pearson Distributions (Version 0.3.2)

2019
cpop: Detection of Multiple Changes in Slope in Univariate Time-Series (Version 1.0.6)

2022
crops: Changepoints for a Range of Penalties (CROPS) (Version 1.0.3)

2021
ctsfeatures: Analyzing Categorical Time Series (Version 1.2.2)

2023
cvCovEst: Cross-Validated Covariance Matrix Estimation (Version 1.2.2)

2021
cvar: Compute Expected Shortfall and Value at Risk for Continuous Distributions (Version 0.5)

2018
cvsem: SEM Model Comparison with K-Fold Cross-Validation (Version 1.0.0)

2022
cylcop: Circular-Linear Copulas with Angular Symmetry for Movement Data (Version 0.2.0)

2021
dCUR: Dimension Reduction with Dynamic CUR (Version 1.0.1)

2020
dagirlite: Spatial Vector Data for Danmarks Administrative Geografiske Inddeling DAGI (Version 0.1.0)

2021
dataquieR: Data Quality in Epidemiological Research (Version 2.1.0)

2021
dccmidas: DCC Models with GARCH and GARCH-MIDAS Specifications in the Univariate Step, RiskMetrics, Moving Covariance and Scalar and Diagonal BEKK Models (Version 0.1.2)

2021
dcortools: Providing Fast and Flexible Functions for Distance Correlation Analysis (Version 0.1.6)

2021
ddtlcm: Latent Class Analysis with Dirichlet Diffusion Tree Process Prior (Version 0.2.1)

2023
desla: Desparsified Lasso Inference for Time Series (Version 0.3.0)

2021
detectnorm: Detect Nonnormality in Meta-Analysis without Raw Data (Version 1.0.0)

2022
discSurv: Discrete Time Survival Analysis (Version 2.0.0)

2015
distributionsrd: Distribution Fitting and Evaluation (Version 0.0.6)

2020
divvy: Spatial Subsampling of Biodiversity Occurrence Data (Version 1.0.0)

2023
dogesr: Work with the Doges/Dogaresse Dataset (Version 0.5.0)

2022
dr4pl: Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model (Version 2.0.0)

2017
drimmR: Estimation, Simulation and Reliability of Drifting Markov Models (Version 1.0.1)

2021
dstabledist: The Discrete Stable Distribution Functions (Version 0.1.0)

2023
dupNodes: Computes DNSLbetweenness, a Betweenness Measure that Includes Self-Loops (Version 0.3.0)

2024
dynr: Dynamic Models with Regime-Switching (Version 0.1.16-105)

2016
eaf: Plots of the Empirical Attainment Function (Version 2.5)

2011
eat: Efficiency Analysis Trees (Version 0.1.4)

2021
ebreg: Implementation of the Empirical Bayes Method (Version 0.1.3)

2019
economiccomplexity: Computational Methods for Economic Complexity (Version 1.5.0)

2019
elections.dtree: Ranked Voting Election Audits with Dirichlet-Trees (Version 2.0.0)

2022
emery: Accuracy Statistic Estimation for Imperfect Gold Standards (Version 0.5.1)

2024
equivalenceTest: Equivalence Test for the Means of Two Normal Distributions (Version 0.0.1.1)

2019
ergm.multi: Fit, Simulate and Diagnose Exponential-Family Models for Multiple or Multilayer Networks (Version 0.2.1)

2022
ergm: Fit, Simulate and Diagnose Exponential-Family Models for Networks (Version 4.6.0)

2008
esci: Estimation Statistics with Confidence Intervals (Version 1.0.2)

2024
espadon: Easy Study of Patient DICOM Data in Oncology (Version 1.6.0)

2022
europeanaR: Interact with Metadata Records and Media on the Europeana Repository (Version 0.1.0)

2022
evinf: Inference with Extreme Value Inflated Count Data (Version 0.8.8)

2023
fake: Flexible Data Simulation Using the Multivariate Normal Distribution (Version 1.4.0)

2022
fastOnlineCpt: Online Multivariate Changepoint Detection (Version 1.0)

2021
fdaSP: Sparse Functional Data Analysis Methods (Version 1.1.1)

2023
feisr: Estimating Fixed Effects Individual Slope Models (Version 1.3.0)

2019
filling: Matrix Completion, Imputation, and Inpainting Methods (Version 0.2.3)

2017
fitPS: Fit Zeta Distributions to Forensic Data (Version 1.0.1)

2022
funkyheatmap: Generating Funky Heatmaps for Data Frames (Version 0.5.0)

2022
funtimes: Functions for Time Series Analysis (Version 9.1)

2015
galamm: Generalized Additive Latent and Mixed Models (Version 0.2.0)

2023
gap: Genetic Analysis Package (Version 1.5-3)

2004
gbutils: Utilities for Simulation, Plots, Quantile Functions and Programming (Version 0.5)

2016
gcxgclab: GCxGC Preprocessing and Analysis (Version 1.0.1)

2024
genscore: Generalized Score Matching Estimators (Version 1.0.2.2)

2020
geocmeans: Implementing Methods for Spatial Fuzzy Unsupervised Classification (Version 0.3.4)

2021
georefdatar: Geosciences Reference Datasets (Version 0.6.5)

2024
germinationmetrics: Seed Germination Indices and Curve Fitting (Version 0.1.8)

2018
grapesAgri1: Collection of Shiny Apps for Agricultural Research Data Analysis (Version 1.1.0)

2021
graph4lg: Build Graphs for Landscape Genetics Analysis (Version 1.8.0)

2019
graphicalExtremes: Statistical Methodology for Graphical Extreme Value Models (Version 0.3.1)

2019
graphon: A Collection of Graphon Estimation Methods (Version 0.3.5)

2017
gravity: Estimation Methods for Gravity Models (Version 1.1)

2017
growR: Implementation of the Vegetation Model ModVege (Version 1.2.0)

2023
haldensify: Highly Adaptive Lasso Conditional Density Estimation (Version 0.2.3)

2020
hcidata: HCI Datasets (Version 0.1.0)

2022
hdme: High-Dimensional Regression with Measurement Error (Version 0.6.0)

2018
heterometa: Convert Various Meta-Analysis Heterogeneity Measures (Version 0.2)

2024
hhsmm: Hidden Hybrid Markov/Semi-Markov Model Fitting (Version 0.3.6)

2021
hopit: Hierarchical Ordered Probit Models with Application to Reporting Heterogeneity (Version 0.11.6)

2019
httk: High-Throughput Toxicokinetics (Version 2.3.1)

2015
hyd1d: 1d Water Level Interpolation along the Rivers Elbe and Rhine (Version 0.5.1)

2023
hydflood: Flood Extents and Durations along the Rivers Elbe and Rhine (Version 0.5.7)

2023
hyper2: The Hyperdirichlet Distribution, Mark 2 (Version 3.0-0)

2017
iAR: Irregularly Observed Autoregressive Models (Version 1.2.0)

2021
ib: Bias Correction via Iterative Bootstrap (Version 0.2.0)

2020
idefix: Efficient Designs for Discrete Choice Experiments (Version 1.0.3)

2017
inspector: Validation of Arguments and Objects in User-Defined Functions (Version 1.0.3)

2020
intkrige: A Numerical Implementation of Interval-Valued Kriging (Version 1.0.1)

2019
ipsRdbs: Introduction to Probability, Statistics and R for Data-Based Sciences (Version 1.0.0)

2023
ir: Functions to Handle and Preprocess Infrared Spectra (Version 0.2.1)

2022
iscoCrosswalks: Crosswalks Between Classifications of Occupations (Version 1.0.0)

2022
jrSiCKLSNMF: Multimodal Single-Cell Omics Dimensionality Reduction (Version 1.2.1)

2023
kgrams: Classical k-gram Language Models (Version 0.2.0)

2021
latdiag: Draws Diagrams Useful for Checking Latent Scales (Version 0.3)

2015
latrend: A Framework for Clustering Longitudinal Data (Version 1.6.0)

2020
lawstat: Tools for Biostatistics, Public Policy, and Law (Version 3.6)

2006
ldt: Automated Uncertainty Analysis (Version 0.5.2)

2023
locStra: Fast Implementation of (Local) Population Stratification Methods (Version 1.9)

2019
lodr: Linear Model Fitting with LOD Covariates (Version 1.0)

2020
lpcde: Boundary Adaptive Local Polynomial Conditional Density Estimator (Version 0.1.4)

2022
lqmix: Linear Quantile Mixture Models (Version 1.0)

2023
mHMMbayes: Multilevel Hidden Markov Models Using Bayesian Estimation (Version 1.1.0)

2019
maotai: Tools for Matrix Algebra, Optimization and Inference (Version 0.2.5)

2019
mase: Model-Assisted Survey Estimators (Version 0.1.5.2)

2018
mau: Decision Models with Multi Attribute Utility Theory (Version 0.1.2)

2017
mclustcomp: Measures for Comparing Clusters (Version 0.3.3)

2017
mcompanion: Objects and Methods for Multi-Companion Matrices (Version 0.6)

2017
mcunit: Unit Tests for MC Methods (Version 0.3.2)

2020
metabias: Meta-Analysis for Within-Study and/or Across-Study Biases (Version 0.1.1)

2023
metap: Meta-Analysis of Significance Values (Version 1.10)

2014
micsr: Microeconometrics with R (Version 0.1-1)

2024
mixAR: Mixture Autoregressive Models (Version 0.22.8)

2020
mmb: Arbitrary Dependency Mixed Multivariate Bayesian Models (Version 0.13.3)

2020
mmrm: Mixed Models for Repeated Measures (Version 0.3.11)

2022
mortAAR: Analysis of Archaeological Mortality Data (Version 1.1.6)

2017
mrct: Outlier Detection of Functional Data Based on the Minimum Regularized Covariance Trace Estimator (Version 0.0.1.0)

2023
mrf2d: Markov Random Field Models for Image Analysis (Version 1.0)

2019
multibiasmeta: Sensitivity Analysis for Multiple Biases in Meta-Analyses (Version 0.2.2)

2023
multibridge: Evaluating Multinomial Order Restrictions with Bridge Sampling (Version 1.2.0)

2021
multinma: Bayesian Network Meta-Analysis of Individual and Aggregate Data (Version 0.6.1)

2020
mvGPS: Causal Inference using Multivariate Generalized Propensity Score (Version 1.2.2)

2020
naspaclust: Nature-Inspired Spatial Clustering (Version 0.2.1)

2021
netcontrol: Control Theory Methods for Networks (Version 0.1)

2020
nlpred: Estimators of Non-Linear Cross-Validated Risks Optimized for Small Samples (Version 1.0.1)

2019
nnspat: Nearest Neighbor Methods for Spatial Patterns (Version 0.1.2)

2021
oosse: Out-of-Sample R² with Standard Error Estimation (Version 1.0.11)

2023
opera: Online Prediction by Expert Aggregation (Version 1.2.0)

2016
otsfeatures: Ordinal Time Series Analysis (Version 1.0.0)

2023
outcomerate: AAPOR Survey Outcome Rates (Version 1.0.1)

2018
partitionComparison: Implements Measures for the Comparison of Two Partitions (Version 0.2.6)

2017
partitions: Additive Partitions of Integers (Version 1.10-7)

2006
pcal: Calibration of P-Values for Point Null Hypothesis Testing (Version 1.0.0)

2020
pcds: Proximity Catch Digraphs and Their Applications (Version 0.1.8)

2020
pcds.ugraph: Underlying Graphs of Proximity Catch Digraphs and Their Applications (Version 0.1.1)

2023
pcsstools: Tools for Regression Using Pre-Computed Summary Statistics (Version 0.1.2)

2021
pcts: Periodically Correlated and Periodically Integrated Time Series (Version 0.15.7)

2020
pdSpecEst: An Analysis Toolbox for Hermitian Positive Definite Matrices (Version 1.2.4)

2017
pdynmc: Moment Condition Based Estimation of Linear Dynamic Panel Data Models (Version 0.9.10)

2020
penPHcure: Variable Selection in PH Cure Model with Time-Varying Covariates (Version 1.0.2)

2019
perms: Fast Permutation Computation (Version 1.13)

2023
phacking: Sensitivity Analysis for p-Hacking in Meta-Analyses (Version 0.2.1)

2022
plm: Linear Models for Panel Data (Version 2.6-4)

2006
popstudy: Applied Techniques to Demographic and Time Series Analysis (Version 1.0.1)

2022
predictMe: Visualize Individual Prediction Performance (Version 0.1)

2022
prinvars: Principal Variables (Version 1.0.0)

2022
psica: Decision Tree Analysis for Probabilistic Subgroup Identification with Multiple Treatments (Version 1.0.2)

2018
pspatreg: Spatial and Spatio-Temporal Semiparametric Regression Models with Spatial Lags (Version 1.1.2)

2022
psymetadata: Open Datasets from Meta-Analyses in Psychology Research (Version 1.0.1)

2021
pvda: Disproportionality Functions for Pharmacovigilance (Version 0.0.3)

2024
quantoptr: Algorithms for Quantile- And Mean-Optimal Treatment Regimes (Version 0.1.3)

2017
rMIDAS: Multiple Imputation with Denoising Autoencoders (Version 1.0.0)

2020
rSpectral: Spectral Modularity Clustering (Version 1.0.0.10)

2022
rTwig: Realistic Quantitative Structure Models (Version 1.0.2)

2024
rankdifferencetest: Kornbrot's Rank Difference Test (Version 2021-11-25)

2021
rarestR: Rarefaction-Based Species Richness Estimator (Version 1.0.0)

2023
rcaiman: CAnopy IMage ANalysis (Version 1.2.2)

2022
rcbayes: Estimate Rogers-Castro Migration Age Schedules with Bayesian Models (Version 0.2.0)

2021
rdracor: Access to the 'DraCor' API (Version 1.0.3)

2023
recalibratiNN: Quantile Recalibration for Regression Models (Version 0.2.0)

2024
ref.ICAR: Objective Bayes Intrinsic Conditional Autoregressive Model for Areal Data (Version 2.0.1)

2018
reformulas: Machinery for Processing Random Effect Formulas (Version 0.2.0)

2024
relliptical: The Truncated Elliptical Family of Distributions (Version 1.3.0)

2021
rema: Rare Event Meta Analysis (Version 0.0.1)

2021
remaCor: Random Effects Meta-Analysis for Correlated Test Statistics (Version 0.0.18)

2022
rgeomstats: Interface to 'Geomstats' (Version 0.0.1)

2022
rlfsm: Simulations and Statistical Inference for Linear Fractional Stable Motions (Version 1.1.2)

2018
robnptests: Robust Nonparametric Two-Sample Tests for Location/Scale (Version 1.1.0)

2021
robustmatrix: Robust Matrix-Variate Parameter Estimation (Version 0.1.2)

2024
rqPen: Penalized Quantile Regression (Version 3.2.2)

2014
rsat: Dealing with Multiplatform Satellite Images (Version 0.1.21)

2021
rsprite2: Identify Distributions that Match Reported Sample Parameters (SPRITE) (Version 0.2.1)

2021
rumidas: Univariate GARCH-MIDAS, Double-Asymmetric GARCH-MIDAS and MEM-MIDAS (Version 0.1.2)

2020
sarima: Simulation and Prediction with Seasonal ARIMA Models (Version 0.9.3)

2017
savvyr: Survival Analysis for AdVerse Events with VarYing Follow-Up Times (Version 0.1.0)

2024
scpoisson: Single Cell Poisson Probability Paradigm (Version 0.0.1)

2022
sensobol: Computation of Variance-Based Sensitivity Indices (Version 1.1.5)

2019
sfcr: Simulate Stock-Flow Consistent Models (Version 0.2.1)

2021
sharp: Stability-enHanced Approaches using Resampling Procedures (Version 1.4.6)

2022
sim2Dpredictr: Simulate Outcomes Using Spatially Dependent Design Matrices (Version 0.1.1)

2020
simhelpers: Helper Functions for Simulation Studies (Version 0.2.1)

2020
simuclustfactor: Simultaneous Clustering and Factorial Decomposition of Three-Way Datasets (Version 0.0.3)

2022
skedastic: Handling Heteroskedasticity in the Linear Regression Model (Version 2.0.2)

2020
slgf: Bayesian Model Selection with Suspected Latent Grouping Factors (Version 2.0.0)

2021
smfishHmrf: Hidden Markov Random Field for Spatial Transcriptomic Data (Version 0.1)

2020
smoke: Small Molecule Octet/BLI Kinetics Experiment (Version 2.0.1)

2019
smoothedLasso: A Framework to Smooth L1 Penalized Regression Operators using Nesterov Smoothing (Version 1.6)

2020
snfa: Smooth Non-Parametric Frontier Analysis (Version 0.0.1)

2018
snowboot: Bootstrap Methods for Network Inference (Version 1.0.2)

2015
socialranking: Social Ranking Solutions for Power Relations on Coalitions (Version 1.1.0)

2022
sonicscrewdriver: Bioacoustic Analysis and Publication Tools (Version 0.0.6)

2019
sorcering: Soil Organic Carbon and CN Ratio Driven Nitrogen Modelling Framework (Version 1.0.0.1)

2021
spNetwork: Spatial Analysis on Network (Version 0.4.3.8)

2021
spsh: Estimation and Prediction of Parameters of Various Soil Hydraulic Property Models (Version 1.1.0)

2019
spsur: Spatial Seemingly Unrelated Regression Models (Version 1.0.2.5)

2019
ssddata: Species Sensitivity Distribution Data (Version 1.0.0)

2021
ssifs: Stochastic Search Inconsistency Factor Selection (Version 1.0.2)

2023
ssmodels: Sample Selection Models (Version 1.0.1)

2022
statespacer: State Space Modelling in 'R' (Version 0.5.0)

2020
statpsych: Statistical Methods for Psychologists (Version 1.5.0)

2021
superb: Summary Plots with Adjusted Error Bars (Version 0.95.9)

2021
survstan: Fitting Survival Regression Models via 'Stan' (Version 0.0.7.1)

2023
swag: Sparse Wrapper Algorithm (Version 0.1.0)

2020
symmetry: Testing for Symmetry of Data and Model Residuals (Version 0.2.3)

2019
tehtuner: Fit and Tune Models to Detect Treatment Effect Heterogeneity (Version 0.3.0)

2022
tern: Create Common TLGs Used in Clinical Trials (Version 0.9.4)

2023
tipsae: Tools for Handling Indices and Proportions in Small Area Estimation (Version 1.0.1)

2022
toolStability: Tool for Stability Indices Calculation (Version 0.1.2)

2021
transfR: Transfer of Hydrograph from Gauged to Ungauged Catchments (Version 1.0.11)

2021
truncnormbayes: Estimates Moments for a Truncated Normal Distribution using 'Stan' (Version 0.0.3)

2022
tseriesTARMA: Analysis of Nonlinear Time Series Through TARMA Models (Version 0.3-4)

2023
tsgarch: Univariate GARCH Models (Version 1.0.0)

2024
tsrobprep: Robust Preprocessing of Time Series Data (Version 0.3.2)

2020
tvR: Total Variation Regularization (Version 0.3.2)

2017
tvmComp: Discounting and Compounding Calculations for Various Scenarios (Version 1.0.2)

2022
txshift: Efficient Estimation of the Causal Effects of Stochastic Interventions (Version 0.3.8)

2020
ungroup: Penalized Composite Link Model for Efficient Estimation of Smooth Distributions from Coarsely Binned Data (Version 1.4.4)

2018
vICC: Varying Intraclass Correlation Coefficients (Version 1.0.0)

2020
vamc: A Monte Carlo Valuation Framework for Variable Annuities (Version 0.2.1)

2018
vcmeta: Varying Coefficient Meta-Analysis (Version 1.3.0)

2021
viscomplexr: Phase Portraits of Functions in the Complex Number Plane (Version 1.1.1)

2020
visvow: Visible Vowels: Visualization of Vowel Variation (Version 1.3.11)

2018
welo: Weighted and Standard Elo Rates (Version 0.1.4)

2021
zcurve: An Implementation of Z-Curves (Version 2.4.0)

2020
zoolog: Zooarchaeological Analysis with Log-Ratios (Version 1.1.0)

2021

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